View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2832_high_6 (Length: 322)
Name: NF2832_high_6
Description: NF2832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2832_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 11733247 - 11733552
Alignment:
| Q |
1 |
aaactagatacccttacacgctgatgtggaaacttgaaatcattgaaaaatttaaggatttatgattgcactagtttaactcatttaccagaaaccatag |
100 |
Q |
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| T |
11733247 |
aaactagtgacccttacacgcggatttggaaacttgaaatcattgaaagatttaaggatttatgattgccctagtttaactcatttaccagaaaccatag |
11733346 |
T |
|
| Q |
101 |
acaatctcacttcacttcgtgaactggttctttctgaatgcagaagtatggattctctgcccaaaggaatgataaagctcacgtcactatttaccttgaa |
200 |
Q |
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| T |
11733347 |
acaatctcacttcacttcgtgaactggttctttctgaatgcagaagtatggattctctgcccaaaggaatgataaagctcacgtcactatttaccttgat |
11733446 |
T |
|
| Q |
201 |
cattatggactgccccttgttattgccaaggtgtcaacctgaaacgggtgatgattggccacaaattgctcaaatcaaacataagtcagtgaaggagact |
300 |
Q |
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| T |
11733447 |
cattatggactgccccttgttattgccaaggtgtcaacctgaaacgggtgatgattggccacaaattgctcaaatcaaacataagtcagtgaaggagact |
11733546 |
T |
|
| Q |
301 |
cctcaa |
306 |
Q |
| |
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|||||| |
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| T |
11733547 |
cctcaa |
11733552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 43 - 270
Target Start/End: Original strand, 11861599 - 11861826
Alignment:
| Q |
43 |
ttgaaaaatttaaggatttatgattgcactagtttaactcatttaccagaaaccatagacaatctcacttcacttcgtgaactggttctttctgaatgca |
142 |
Q |
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| T |
11861599 |
ttgaaagacttaaggatttatgattgtcatggtttaacttttttaccagaaagtataggtaacctcacttcacttgaaaaactggttctttctgaatgca |
11861698 |
T |
|
| Q |
143 |
gaagtatggattctctgcccaaaggaatgataaagctcacgtcactatttaccttgaacattatggactgccccttgttattgccaaggtgtcaacctga |
242 |
Q |
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| T |
11861699 |
gaaagttagattctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaaccaga |
11861798 |
T |
|
| Q |
243 |
aacgggtgatgattggccacaaattgct |
270 |
Q |
| |
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| T |
11861799 |
cacaggtgatgattggccacaaattgct |
11861826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 30 - 279
Target Start/End: Original strand, 11829487 - 11829736
Alignment:
| Q |
30 |
aaacttgaaatcattgaaaaatttaaggatttatgattgcactagtttaactcatttaccagaaaccatagacaatctcacttcacttcgtgaactggtt |
129 |
Q |
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| T |
11829487 |
aaacgtgaaaactttgaaagacttgaggatttatgattgtcatggtttaacttctttaccagaaagtataggtaacctcacttcacttgaaagactggtt |
11829586 |
T |
|
| Q |
130 |
ctttctgaatgcagaagtatggattctctgcccaaaggaatgataaagctcacgtcactatttaccttgaacattatggactgccccttgttattgccaa |
229 |
Q |
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| T |
11829587 |
ctttctgaatgcagaaatttagattctcttcccaaaggaatggaaatgcttcagtctctaaatactttgattattatggattgccctttgttattgccaa |
11829686 |
T |
|
| Q |
230 |
ggtgtcaacctgaaacgggtgatgattggccacaaattgctcaaatcaaa |
279 |
Q |
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|||||||||| || || |||||||||||||||||||||||||| |||||| |
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| T |
11829687 |
ggtgtcaaccagacacaggtgatgattggccacaaattgctcatatcaaa |
11829736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 50 - 278
Target Start/End: Complemental strand, 11900912 - 11900684
Alignment:
| Q |
50 |
atttaaggatttatgattgcactagtttaactcatttaccagaaaccatagacaatctcacttcacttcgtgaactggttctttctgaatgcagaagtat |
149 |
Q |
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|||||||| ||||||||||| | || ||||| | || |||||| ||||| || |||||||| ||| | |||| ||| ||||||||||||||| | | |
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| T |
11900912 |
atttaaggctttatgattgccatggtctaactgacctaacagaaagcataggtaacctcacttcccttggcaaactagttatttctgaatgcagaaattt |
11900813 |
T |
|
| Q |
150 |
ggattctctgcccaaaggaatgataaagctcacgtcactatttaccttgaacattatggactgccccttgttattgccaaggtgtcaacctgaaacgggt |
249 |
Q |
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|||| ||||||||| || ||| || ||| ||| ||| ||| |||| |||||||| ||||| ||||||||||||||||||||||| || || ||| |
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| T |
11900812 |
agattatctgcccaaggggatggaaatgctacagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaacccgacacaggt |
11900713 |
T |
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| Q |
250 |
gatgattggccacaaattgctcaaatcaa |
278 |
Q |
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| T |
11900712 |
gatgattggccacaaattgctcatatcaa |
11900684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 12040473 - 12040611
Alignment:
| Q |
122 |
aactggttctttctgaatgcagaagtatggattctctgcccaaaggaatgataaagctcacgtcactatttaccttgaacattatggactgccccttgtt |
221 |
Q |
| |
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||||||||||||| |||||||||| | ||||||||||||||||||||| || ||| ||| ||| || |||| |||| ||||||||| ||||| |
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| T |
12040473 |
aactggttctttcggaatgcagaaagttagattctctgcccaaaggaatggaaacgctacagtctctaaagactttgattattagggactgcccgttgtt |
12040572 |
T |
|
| Q |
222 |
attgccaaggtgtcaacctgaaacgggtgatgattggcc |
260 |
Q |
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|||||||||||||||||| || ||||||||||||||||| |
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| T |
12040573 |
attgccaaggtgtcaaccagacacgggtgatgattggcc |
12040611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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