View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2832_low_1 (Length: 418)
Name: NF2832_low_1
Description: NF2832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2832_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 406
Target Start/End: Original strand, 5984496 - 5984873
Alignment:
| Q |
20 |
attccatgtccatcttatttgaaaagaaaccatagtcaattttcgatgaactnnnnnnnttgaaatccagaatattttggttaatttttggtcatacacc |
119 |
Q |
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| T |
5984496 |
attccatgtccatcttatttgaaaagaaaccatagtcaattttcgatgaactaaaaa--ttgaaatccagaatattttggttaatttttggtcatacacc |
5984593 |
T |
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| Q |
120 |
attagtcagaaatgttaacaacatgatgaataataataataatacattttgtagtttttgcttggttgcttgatggggttgtatttgtgtgctctttaat |
219 |
Q |
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| T |
5984594 |
attagtcagaaatgttaacaacatgatgaataataataata---cattttgtagtttttgcttggttgcttgatggggttgtatttgtgtgctcttta-- |
5984688 |
T |
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| Q |
220 |
tatttgcagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgcgtacgtcccttactctatgctcttcggtgtacttact |
319 |
Q |
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| T |
5984689 |
--tttgcagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgtgtacttcccttactctatgctcttcggtgtacttact |
5984786 |
T |
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| Q |
320 |
gacaagcttctttggattccttctatttggtgaaggagttcttgatgacgtgcttgccaattttgatgctgatcttggaattccctt |
406 |
Q |
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| T |
5984787 |
gacaagcttctttgggttccttctatttggtgaaggagttcttgatgatgttcttgccaattttgatactgatcttggaattccctt |
5984873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 226 - 406
Target Start/End: Original strand, 5968684 - 5968864
Alignment:
| Q |
226 |
cagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgcgtacgtcccttactctatgctcttcggtgtacttactgacaag |
325 |
Q |
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| T |
5968684 |
cagttcaaagcatagagaatgaactggaggattcctcacggatacgtggggttgtgcgtacttcccttactctatgctcttcggtgtacttactgacaag |
5968783 |
T |
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| Q |
326 |
cttctttggattccttctatttggtgaaggagttcttgatgacgtgcttgccaattttgatgctgatcttggaattccctt |
406 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| |
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| T |
5968784 |
cttctttgggttccttctatttggtgaaggagttcttgatgatgttcttgccaattttgatactgatcttggaattccctt |
5968864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 226 - 406
Target Start/End: Complemental strand, 8715463 - 8715283
Alignment:
| Q |
226 |
cagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgcgtacgtcccttactctatgctcttcggtgtacttactgacaag |
325 |
Q |
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| T |
8715463 |
cagttcaaagcatagagaatgaactggaggattcctcacggatacgtggggttgtgcgtacatcccttactctatgctcttcggtgtacttactgacaag |
8715364 |
T |
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| Q |
326 |
cttctttggattccttctatttggtgaaggagttcttgatgacgtgcttgccaattttgatgctgatcttggaattccctt |
406 |
Q |
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| T |
8715363 |
cttctttgggttccttctatttggtgaaggagttcttgatgatgttcttgccaattttgatactgatcttggaattccctt |
8715283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 219 - 418
Target Start/End: Original strand, 5963544 - 5963743
Alignment:
| Q |
219 |
ttatttgcagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgcgtacgtcccttactctatgctcttcggtgtacttac |
318 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||| || || ||| |
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| T |
5963544 |
ttatttgcagttcataacattgataatgaactggaggattcctcacggatgcgtggggttgtgcgtacttcccttactctatgctcttcagtatatgtac |
5963643 |
T |
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| Q |
319 |
tgacaagcttctttggattccttctatttggtgaaggagttcttgatgacgtgcttgccaattttgatgctgatcttggaattccctttgcttctcctct |
418 |
Q |
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| T |
5963644 |
tgacaagcttctttgggttccttctatttggtgaaggaactcttgatgatgtgcttgccaattttgatactgattttggaattccttttggttctgctct |
5963743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 219 - 413
Target Start/End: Original strand, 5935147 - 5935341
Alignment:
| Q |
219 |
ttatttgcagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgcgtacgtcccttactctatgctcttcggtgtacttac |
318 |
Q |
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|||||||||||||| | ||||||||||||||||||||| |||||| ||||| || ||||||||| | |||||||||||||||||||| || ||||||| |
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| T |
5935147 |
ttatttgcagttcacaacatagataatgaactggaggactcctcatggatgcatggcgttgtgcgtgcttcccttactctatgctcttcagtttacttac |
5935246 |
T |
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| Q |
319 |
tgacaagcttctttggattccttctatttggtgaaggagttcttgatgacgtgcttgccaattttgatgctgatcttggaattccctttgcttct |
413 |
Q |
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|||||||||||||||| ||||||||||||||||| | |||| |||||| ||||||||||||||| || |||| |||||||| |||| |||| |
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| T |
5935247 |
tgacaagcttctttgggttccttctatttggtgacgatactcttcctgacgttcttgccaattttgatactaatctcggaattccttttggttct |
5935341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 224 - 413
Target Start/End: Complemental strand, 5628331 - 5628142
Alignment:
| Q |
224 |
tgcagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgcgtacgtcccttactctatgctcttcggtgtacttactgaca |
323 |
Q |
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||||||||| ||||||||||||||||| ||||| ||||| |||| || ||||| ||||| |||| ||||||||| || ||||| ||| ||| | |
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| T |
5628331 |
tgcagttcacagcatagataatgaactcgaggacaactcacagatgcaaggcgttgtacgtacagccctcggtctatgctcatccgtgtatttaatgata |
5628232 |
T |
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| Q |
324 |
agcttctttggattccttctatttggtgaaggagttcttgatgacgtgcttgccaattttgatgctgatcttggaattccctttgcttct |
413 |
Q |
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||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||| |||| |
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| T |
5628231 |
agcttctttgggttcctcctatttggtgaaggaactcttgatgacgtacttgccaatttcgatgctgatcttggaattccttttggttct |
5628142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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