View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2832_low_2 (Length: 416)
Name: NF2832_low_2
Description: NF2832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2832_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 4526546 - 4526951
Alignment:
| Q |
1 |
gcacctaagtctaccaacacagaggaaaatttgattaaagttttgcagtttttgtgatcatgtttacagcttataatttcaaggtccaatatgtgtattt |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4526546 |
gcacctatgtctaccaacacagaggaaaatttgattaaagttttgcagtttttgtgatcatgtttacagcttataatttcaaggtccaatatgtgtattt |
4526645 |
T |
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| Q |
101 |
acaacttaactctaatcctaaagtatgtgaagaaaattgtgaatagtctctaaaatatatgaaaaacttgtaggattatgttccaaaccagcgcttctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4526646 |
acaacttaactctaatcctaaagtatgtgaagaaaattgtgaatagtctctaaaatatatgaaaaacttgtaggattatgttccaaaccagcgcttctct |
4526745 |
T |
|
| Q |
201 |
caatatcccaacctttaagtatgtaggggcttcaaagcttgactaacaagccagaaatttgactttgagaaagtttgttcctttcccaacaagaggatgt |
300 |
Q |
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| T |
4526746 |
taatatcccaacctttaagtatgtaggggcttcaaagcttgactaacaagcgagaaatttgactttgagaaagtttgttcctttcccaacaggaggatgt |
4526845 |
T |
|
| Q |
301 |
ataaatctccaagtcaggcgcggccggcagcgcacttttccattgctttctctaataggagctcgaaaaccggtacttgtctaggctgagaagtttcata |
400 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4526846 |
ataaatctccaagtcaggcg----cggcagcgcacttttccattgctttctctaataggagctcgaaaaccggtacttgtctaggctgagaagtttcata |
4526941 |
T |
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| Q |
401 |
ttcatctcac |
410 |
Q |
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| T |
4526942 |
ttcatgtcac |
4526951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 41 - 305
Target Start/End: Original strand, 4495272 - 4495533
Alignment:
| Q |
41 |
ttttgcagtttttgtgatcatgtttacagcttataatttcaaggtccaatatgtgtatttacaacttaactctaatcctaaagtatgtgaagaaaattgt |
140 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||| |
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| T |
4495272 |
ttttgcagtttttgtgatcatgtttacaacttataatttcaaggtccaatatgtgtatttacaacttaattctaatcctaaagtatgtgcagaatattgt |
4495371 |
T |
|
| Q |
141 |
gaatagtctctaaaatatatgaaaaacttgtaggattatgttccaaaccagcgcttctctcaatatcccaacctttaagtatgtaggggcttcaaagctt |
240 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| | |||| | |||||||||||||||||||| |||||||||||||||||| |
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| T |
4495372 |
gaagagtctctaaaatatatgaaaaacttgtaggattatgttccaaa----ctgttcttttaatatcccaacctttaagtaagtaggggcttcaaagctt |
4495467 |
T |
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| Q |
241 |
gactaacaagccagaaatttgac-tttgagaaagtttgttcctttcccaacaagaggatgtataaa |
305 |
Q |
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| T |
4495468 |
gactaacaatcgagaaagttgacatttcagaaagttccttcctctccaaacaagaggatgtataaa |
4495533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 465887 - 465796
Alignment:
| Q |
185 |
aaaccagcgcttctctcaatatcccaacctttaagtatgtagggg-cttcaaagcttgactaacaagccagaaatttgactttgagaaagtt |
275 |
Q |
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|||||||||||||| | |||||||||||| | ||| | ||||||| ||||||||||||||||| |||| ||||| || ||||||||| |||| |
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| T |
465887 |
aaaccagcgcttcttttaatatcccaaccataaagaaagtagggggcttcaaagcttgactaataagcgagaaagtttactttgagacagtt |
465796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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