View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2832_low_3 (Length: 381)
Name: NF2832_low_3
Description: NF2832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2832_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 25733479 - 25733124
Alignment:
| Q |
11 |
caaaggtaaaagtatcataattcaagaagaattccaccaaatacaacctacacaagagcaccaccagattcttagcaggacagattttattatcaggtgt |
110 |
Q |
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| T |
25733479 |
caaaggtaaaagtatcataattcaagaagaattccaccaaatacaacctacacaagagcaccaccagattcttagcaggacagattttattatcaggtgt |
25733380 |
T |
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| Q |
111 |
agcctcatcagtctcacgtccattggaccaaaacacatgtttcaacagcttctctccatcgccaatgaacctctcagcaataaaatcttcaggtttctca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |
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| T |
25733379 |
agcctcatcagtctcacgtccattggaccaaaacacatgtttcaacagcttctctccatcgccaataaacctctcagcaataaaatcctcaggtttgtca |
25733280 |
T |
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| Q |
211 |
aagatcttagcatcttttgtagcgaacggttgatatccaaagatcatttcacctttcttgatctcaaaagatgcatcatgactttgcaccactagatcct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
25733279 |
aagatcttagcatcttttgtagcgaacggttgatatccaaagatcatttcacctttcttgatctcaaaagatgcatcatggctctgcaccactagatcct |
25733180 |
T |
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| Q |
311 |
ccctagctttagcatattgatatggaacagcaggttcaattcttaaagcttcatac |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25733179 |
ccctagctttagcatattgatatggaacagcaggttcaattcttaaagcttcatac |
25733124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 352
Target Start/End: Complemental strand, 12492700 - 12492570
Alignment:
| Q |
222 |
atcttttgtagcgaacggttgatatccaaagatcatttcacctttcttgatctcaaaagatgcatcatgactttgcaccactagatcctccctagcttta |
321 |
Q |
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||||||||| ||||| ||||| |||||||| ||||| ||||| || || || ||||||| || || ||||| | ||| | || ||| || || ||||| |
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| T |
12492700 |
atcttttgtcgcgaaaggttggtatccaaatatcatctcacccttttttatttcaaaagccgcgtcgtgactcttcacgattaaatcttctcttgctttt |
12492601 |
T |
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| Q |
322 |
gcatattgatatggaacagcaggttcaattc |
352 |
Q |
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||||||||||| || |||||||||||||||| |
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| T |
12492600 |
gcatattgataaggcacagcaggttcaattc |
12492570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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