View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2832_low_4 (Length: 342)
Name: NF2832_low_4
Description: NF2832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2832_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 41811621 - 41811295
Alignment:
| Q |
1 |
agggcctgtgcatgttcttctctgattttttcgatgtggtgctccaactcttcttttgctttctgcaaggaaagcaggtccttttgcaggttatcaactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41811621 |
agggcctgtgcatgttcttctctgattttttcgatgtggtgctccaactcttcttttgctttctgcaaggaaagcaggtccttttgcaggttatcaactt |
41811522 |
T |
|
| Q |
101 |
gggctgtgaaggcaactatttttcctgacaactcttcctctgcctcggaaagtttatcctgaagtgcagagaactcaaattctcttgttgctaatctttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41811521 |
gggctgtgaaggcaactatttttcctgacgactcttcctctgcctcggaaagtttatcctgaagtgcagagaactcaaattctcttgttgctaatctttt |
41811422 |
T |
|
| Q |
201 |
ctctgaatgatctattttgtctgccagctccaacttctcctgtgccagtttagcgatgtgatcacagtaagcaattatttgcttttcgttctcacttact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41811421 |
ctctgaatgatctattttgtctgccagctccaacttctcctgtgccagtttagcgatgtgatcacagtaagcaattatttgcttttcgttctcacttact |
41811322 |
T |
|
| Q |
301 |
ttttgctttaaagtgttcaactcacag |
327 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
41811321 |
ttttgctttaaagtgttcaactcacag |
41811295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 41 - 325
Target Start/End: Complemental strand, 41798290 - 41798006
Alignment:
| Q |
41 |
gctccaactcttcttttgctttctgcaaggaaagcaggtccttttgcaggttatcaacttgggctgtgaaggcaactatttttcctgacaactcttcctc |
140 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| |||||||||||| || |||||||| ||||||||||||| | |||||||||| ||||||||| |
|
|
| T |
41798290 |
gctccaattcttcttttgttttctgcaaggaaagcaagtccttttgcagattgtcaacttgagctgtgaaggcaattgtttttcctgaagcctcttcctc |
41798191 |
T |
|
| Q |
141 |
tgcctcggaaagtttatcctgaagtgcagagaactcaaattctcttgttgctaatcttttctctgaatgatctattttgtctgccagctccaacttctcc |
240 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| || ||| |
|
|
| T |
41798190 |
tgccttataaagtttatcctgaagtgtagagaactcaaattctcttgttgctaatcttctctccgaatgatctattttgtctgctagctccaaattttcc |
41798091 |
T |
|
| Q |
241 |
tgtgccagtttagcgatgtgatcacagtaagcaattatttgcttttcgttctcacttactttttgctttaaagtgttcaactcac |
325 |
Q |
| |
|
|||||||||||| ||| | ||| | || |||| | ||||||||| ||| |||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
41798090 |
tgtgccagtttactgatctcatcccggttagcactgatttgctttgcgtattcactttctttttgctctaaagtgtttaactcac |
41798006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 41804654 - 41804568
Alignment:
| Q |
166 |
gcagagaactcaaattctcttgttgctaatcttttctctgaatgatctattttgtctgccagctccaacttctcctgtgccagttta |
252 |
Q |
| |
|
|||||||||||| ||| | ||||||||||| || |||| ||||||||| ||| ||| ||| | ||| |||||||||||||||||| |
|
|
| T |
41804654 |
gcagagaactcagatttttttgttgctaatattctctccaaatgatctaatttctctcccatcaacaaattctcctgtgccagttta |
41804568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University