View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2832_low_8 (Length: 251)
Name: NF2832_low_8
Description: NF2832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2832_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 11733275 - 11733032
Alignment:
| Q |
1 |
ccaaatccgcgtgtaagggtcactagttttggaatactccttaatgtaagagactcaagctttataagaccctcccaataatcgacttcaggtttttcga |
100 |
Q |
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| T |
11733275 |
ccaaatccgcgtgtaagggtcactagttttggaatactccttaaagtaagagactcaagctttacaagaccctcccaataatcgacttcaggtttttcga |
11733176 |
T |
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| Q |
101 |
ggtggaactcctgacatctctcaatacagagagactgtagtgaacagagagtcttgaaaccttgtggtaatgactttaagttaggacaatctcgaatgtg |
200 |
Q |
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| T |
11733175 |
ggtggaactcctgacatctctcaatacagagagactgtagtgaacagagagtcttgaaaccttgtggtaatgactttaagttaggacaatctcgaatgtg |
11733076 |
T |
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| Q |
201 |
aagttctttaagggaagtgaagccttcaagccaattctgtggtg |
244 |
Q |
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| T |
11733075 |
aagttctttaagggaagtgaagccttcaagccaattctgtggtg |
11733032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 11829462 - 11829410
Alignment:
| Q |
25 |
agttttggaatactccttaatgtaagagactcaagctttataagaccctccca |
77 |
Q |
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| T |
11829462 |
agttttggaatactccttaatgtaagagattgaaggtttttcagaccctccca |
11829410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 11901082 - 11901135
Alignment:
| Q |
153 |
cttgaaaccttgtggtaatgactttaagttaggacaatctcgaatgtgaagttc |
206 |
Q |
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| T |
11901082 |
cttgaaaccttgtggtaaagactttaaaataacacaatctctaatgtgaagttc |
11901135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 12040353 - 12040304
Alignment:
| Q |
28 |
tttggaatactccttaatgtaagagactcaagctttataagaccctccca |
77 |
Q |
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| T |
12040353 |
tttggaatactccttaatgtaagagaacgaaggtttatcagaccctccca |
12040304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 11861561 - 11861509
Alignment:
| Q |
25 |
agttttggaatactccttaatgtaagagactcaagctttataagaccctccca |
77 |
Q |
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| T |
11861561 |
agttttggaatactccttaatgtaagagaacgaaggtttttcagaccctccca |
11861509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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