View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2832_low_9 (Length: 238)

Name: NF2832_low_9
Description: NF2832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2832_low_9
NF2832_low_9
[»] chr7 (20 HSPs)
chr7 (52-225)||(8394113-8394292)
chr7 (52-225)||(36630804-36630983)
chr7 (52-222)||(5555475-5555651)
chr7 (52-222)||(3114099-3114275)
chr7 (72-223)||(14777109-14777266)
chr7 (64-225)||(37002144-37002311)
chr7 (64-225)||(34389056-34389223)
chr7 (73-225)||(35090177-35090335)
chr7 (64-223)||(8867733-8867898)
chr7 (83-225)||(40920003-40920151)
chr7 (89-224)||(38638237-38638378)
chr7 (72-225)||(26624753-26624913)
chr7 (64-225)||(33685564-33685731)
chr7 (72-225)||(43184468-43184627)
chr7 (89-225)||(36658206-36658348)
chr7 (64-225)||(7002725-7002892)
chr7 (64-225)||(7048596-7048763)
chr7 (121-179)||(10868525-10868585)
chr7 (191-225)||(10868456-10868490)
chr7 (77-109)||(10876829-10876861)
[»] chr4 (39 HSPs)
chr4 (52-225)||(36382346-36382524)
chr4 (52-225)||(25930696-25930875)
chr4 (65-225)||(20129311-20129477)
chr4 (66-225)||(43143584-43143749)
chr4 (52-222)||(29319708-29319884)
chr4 (64-225)||(30216742-30216909)
chr4 (72-225)||(48989336-48989495)
chr4 (65-225)||(13012189-13012355)
chr4 (65-225)||(47500774-47500940)
chr4 (67-225)||(3292896-3293060)
chr4 (52-222)||(40529001-40529179)
chr4 (65-225)||(26439279-26439445)
chr4 (65-225)||(34407284-34407450)
chr4 (64-225)||(6690235-6690402)
chr4 (72-223)||(50205079-50205236)
chr4 (52-225)||(17511233-17511412)
chr4 (64-225)||(10352884-10353051)
chr4 (65-225)||(30077631-30077797)
chr4 (65-225)||(43355905-43356071)
chr4 (76-225)||(29995983-29996138)
chr4 (72-213)||(42333788-42333935)
chr4 (123-225)||(6235579-6235687)
chr4 (81-225)||(44156668-44156818)
chr4 (91-225)||(28877250-28877390)
chr4 (89-225)||(26448078-26448219)
chr4 (89-225)||(35545978-35546120)
chr4 (99-225)||(1817752-1817884)
chr4 (89-164)||(45194201-45194276)
chr4 (66-160)||(30109958-30110052)
chr4 (76-161)||(48129978-48130063)
chr4 (87-157)||(6254567-6254637)
chr4 (59-149)||(27363356-27363446)
chr4 (142-213)||(13392893-13392970)
chr4 (142-213)||(13396032-13396109)
chr4 (191-225)||(30110108-30110142)
chr4 (191-225)||(48130111-48130145)
chr4 (64-105)||(7769328-7769369)
chr4 (64-101)||(49908782-49908819)
chr4 (64-100)||(6212029-6212065)
[»] chr3 (19 HSPs)
chr3 (52-225)||(19390134-19390313)
chr3 (52-225)||(34084122-34084301)
chr3 (64-225)||(45182981-45183148)
chr3 (72-224)||(6269427-6269585)
chr3 (52-225)||(22968444-22968623)
chr3 (72-225)||(11018212-11018371)
chr3 (65-225)||(39771791-39771957)
chr3 (64-225)||(6930894-6931061)
chr3 (52-225)||(40081741-40081917)
chr3 (64-225)||(45335875-45336041)
chr3 (73-225)||(27935187-27935345)
chr3 (72-209)||(19565517-19565660)
chr3 (64-225)||(6503569-6503736)
chr3 (64-225)||(33040953-33041120)
chr3 (64-225)||(35514266-35514429)
chr3 (59-124)||(22922152-22922217)
chr3 (180-225)||(22922217-22922262)
chr3 (89-160)||(5135294-5135365)
chr3 (191-225)||(5135421-5135455)
[»] chr8 (15 HSPs)
chr8 (52-222)||(15838274-15838449)
chr8 (52-225)||(29728386-29728565)
chr8 (52-225)||(3648794-3648973)
chr8 (72-225)||(16788025-16788184)
chr8 (63-225)||(34136825-34136993)
chr8 (65-225)||(39914516-39914681)
chr8 (64-225)||(4404008-4404175)
chr8 (64-225)||(23402108-23402275)
chr8 (64-225)||(36408551-36408718)
chr8 (89-212)||(9877245-9877374)
chr8 (96-225)||(42230971-42231104)
chr8 (80-174)||(3435285-3435381)
chr8 (64-225)||(2729196-2729363)
chr8 (191-225)||(40470475-40470509)
chr8 (89-157)||(40470567-40470635)
[»] chr5 (21 HSPs)
chr5 (52-222)||(10033915-10034091)
chr5 (52-225)||(13817965-13818144)
chr5 (52-224)||(1776377-1776555)
chr5 (65-225)||(26283318-26283484)
chr5 (52-225)||(39434684-39434863)
chr5 (64-225)||(31680367-31680534)
chr5 (52-225)||(36293621-36293800)
chr5 (64-225)||(37254641-37254808)
chr5 (61-222)||(39657509-39657676)
chr5 (52-209)||(3155647-3155810)
chr5 (64-225)||(17332551-17332718)
chr5 (82-225)||(16155015-16155164)
chr5 (78-225)||(33430335-33430488)
chr5 (59-225)||(19985934-19986106)
chr5 (72-225)||(12278860-12279019)
chr5 (94-222)||(16333879-16334013)
chr5 (64-225)||(31501716-31501883)
chr5 (72-225)||(36291379-36291538)
chr5 (83-225)||(43068896-43069044)
chr5 (77-161)||(28801300-28801384)
chr5 (52-100)||(14316646-14316694)
[»] chr2 (21 HSPs)
chr2 (52-222)||(35962703-35962879)
chr2 (52-222)||(42439974-42440150)
chr2 (52-222)||(32127144-32127320)
chr2 (67-225)||(41251634-41251798)
chr2 (65-225)||(6403804-6403970)
chr2 (52-225)||(17445041-17445218)
chr2 (60-225)||(31581622-31581793)
chr2 (52-222)||(18981605-18981780)
chr2 (52-222)||(2285850-2286026)
chr2 (64-225)||(44084603-44084770)
chr2 (64-225)||(45418583-45418750)
chr2 (72-224)||(771007-771165)
chr2 (52-222)||(16405588-16405764)
chr2 (64-224)||(8147351-8147518)
chr2 (82-225)||(12756837-12756986)
chr2 (52-180)||(2958152-2958279)
chr2 (66-222)||(8059336-8059498)
chr2 (93-225)||(26162702-26162837)
chr2 (64-225)||(26237957-26238110)
chr2 (64-180)||(4555260-4555377)
chr2 (73-139)||(7072644-7072710)
[»] chr6 (10 HSPs)
chr6 (52-222)||(13837809-13837985)
chr6 (52-222)||(34948761-34948937)
chr6 (64-225)||(28996730-28996897)
chr6 (65-225)||(398618-398784)
chr6 (64-225)||(18339106-18339273)
chr6 (72-225)||(29743291-29743450)
chr6 (80-225)||(33229336-33229487)
chr6 (64-160)||(31028435-31028531)
chr6 (79-149)||(24697899-24697969)
chr6 (64-100)||(13647017-13647053)
[»] chr1 (14 HSPs)
chr1 (52-222)||(7433433-7433609)
chr1 (65-225)||(26144256-26144422)
chr1 (52-225)||(32982056-32982235)
chr1 (52-225)||(42310941-42311120)
chr1 (76-225)||(3828996-3829150)
chr1 (75-224)||(17445324-17445479)
chr1 (64-225)||(35907552-35907719)
chr1 (71-225)||(321377-321537)
chr1 (52-170)||(23313226-23313345)
chr1 (65-160)||(41972346-41972440)
chr1 (64-180)||(33489687-33489805)
chr1 (191-225)||(33489839-33489873)
chr1 (191-225)||(41972256-41972290)
chr1 (64-101)||(31866977-31867014)
[»] scaffold0069 (1 HSPs)
scaffold0069 (52-225)||(17830-18009)
[»] scaffold0002 (1 HSPs)
scaffold0002 (65-225)||(480457-480623)
[»] scaffold2142 (1 HSPs)
scaffold2142 (72-225)||(530-689)
[»] scaffold0502 (1 HSPs)
scaffold0502 (64-225)||(5230-5397)
[»] scaffold0041 (1 HSPs)
scaffold0041 (83-225)||(52944-53092)
[»] scaffold0154 (1 HSPs)
scaffold0154 (76-225)||(31492-31647)


Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 8394113 - 8394292
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  8394113 gttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaagga 8394212  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||| |||||    
T  8394213 aaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacgggtttatctc 8394292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 36630804 - 36630983
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36630804 gttctaccgtatggcgaccccggacggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaaaga 36630903  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||||||||||||||||||||      |||||||||||||||||| |||||||||||||||||||||||||||    
T  36630904 aaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttagttagcacactattgacgggttcatctc 36630983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 5555475 - 5555651
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| | |||||| ||||||||||||||    
T  5555475 gttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacgcatttacaaaaaga 5555574  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcat 222  Q
    ||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  5555575 aaaatttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcat 5555651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 52 - 222
Target Start/End: Complemental strand, 3114275 - 3114099
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| ||||||| |||| ||| |||||||||||| |||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||    
T  3114275 gttctaccgtatggtgaccccggacggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaaga 3114176  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcat 222  Q
    ||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  3114175 aaaatttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcat 3114099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 14777266 - 14777109
Alignment:
Q  72 cgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaa 171  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||| |||||   |||||||||||||||||||||||||||||||||||||||||    
T  14777266 cgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggcaatctgaaa 14777167  T
Q  172 attgtcac------ataggtcttggaattttatttagcacactattgacgggttcatc 223  Q
    ||||||||      ||||||||||||||||||||||||||||||||||| | ||||||    
T  14777166 attgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatc 14777109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 37002311 - 37002144
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| ||||||||||  |||  |||||||||||||||||||||||| || ||| | ||||||| ||||||||| |||||||||||||||||||||||    
T  37002311 ggcgaccccgggcggtcgttcggtctcgatcgataatttttgcacattagacccaatccaaaagtcaattaacacacttacaaaaagaaaaatttgggca 37002212  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| ||||      ||||||||||||||||||||||||||||||||||||||||||||||    
T  37002211 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 37002144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 34389223 - 34389056
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||| |||||   ||||||||| |||||||||||||||||||||||    
T  34389223 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgggca 34389124  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| ||||      |||||||| |||||||||||||||||| ||| ||||||||||||||    
T  34389123 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacattatcgacgggttcatctc 34389056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 73 - 225
Target Start/End: Original strand, 35090177 - 35090335
Alignment:
Q  73 gggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaa 172  Q
    ||||||||||||||| |||||| ||||||||||||||||| || ||||| ||||| | ||||||||| ||||||||||||||||||||| ||||||||||    
T  35090177 gggcggtcgcccgggctcgatcaataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggtaatctgaaaa 35090276  T
Q  173 ttgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    || ||||      |||||||| |||||||||||||||||||||||||||| ||||||||    
T  35090277 ttctcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctc 35090335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 8867898 - 8867733
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| |||| || ||| | ||||| | ||||| |||||||||||||||||||||||||||    
T  8867898 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcatattagacccaatccaaaagccaattaatacatttacaaaaagaaaaatttgggca 8867799  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatc 223  Q
    ||| ||||||| ||||      |||||||| |||||||||||||||||||||||||||| ||||||    
T  8867798 atcggaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatc 8867733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 83 - 225
Target Start/End: Complemental strand, 40920151 - 40920003
Alignment:
Q  83 ccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac--- 179  Q
    ||||| |||||||||||||||||||||||| | | |||| ||||| | |||||||||||||||||||||||||||||| ||||||||||||| ||||       
T  40920151 ccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctcacatg 40920052  T
Q  180 ---ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
       |||||||| |||||||||||||||||||||||||||||||||||||    
T  40920051 caaataggtctcggaattttatttagcacactattgacgggttcatctc 40920003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 38638378 - 38638237
Alignment:
Q  89 tcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac------ata 182  Q
    ||||| |||||||||||||||||| |  ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||      |||    
T  38638378 tcgattgataatttttgcacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaata 38638279  T
Q  183 ggtcttggaattttatttagcacactattgacgggttcatct 224  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  38638278 ggtctcggaattttatttagcacactattgacgggttcatct 38638237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 72 - 225
Target Start/End: Original strand, 26624753 - 26624913
Alignment:
Q  72 cgggcggtcgcccgggttcgat-cgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaa 170  Q
    |||||||||||| ||| ||||| |||||||||||||| |||| || ||| | ||||||  ||||||||| ||||||||||||||||||||||||||||||    
T  26624753 cgggcggtcgcctgggctcgattcgataatttttgcatattagacccaatccaaaagttaattaacacacttacaaaaagaaaaatttgggcaatctgaa 26624852  T
Q  171 aattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||| ||||      |||||||| |||||||||||||||||||||||||||||||||||||    
T  26624853 aattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 26624913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 33685564 - 33685731
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| | ||| ||||| |||| ||||||||||||||||||||||||||| ||||| ||||| | ||||||||| |||||||||||||||||||||||    
T  33685564 ggcgaccccaggcagtcgctcgggctcgatcgataatttttgcacattaaacccaacccaaaagcccattaacacacttacaaaaagaaaaatttgggca 33685663  T
Q  164 atctgaaaattgt------cacataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| |      || ||| ||||   ||||||||||||||||||||||||||||| |||||    
T  33685664 atctgaaaattctcatacgcaaatatgtctcataattttatttagcacactattgacgggtttatctc 33685731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 72 - 225
Target Start/End: Complemental strand, 43184627 - 43184468
Alignment:
Q  72 cgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaa 171  Q
    ||||||||||| |||| |||||||||||||||| | ||| | ||| |||| ||||| | ||||||| | |||||||||||||||||||||||||||||||    
T  43184627 cgggcggtcgctcgggctcgatcgataatttttacgcatcagacttaacccaaaagccaattaacatacttacaaaaagaaaaatttgggcaatctgaaa 43184528  T
Q  172 attgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||| ||||      ||||||||  ||||||||||||||||||||||||||||||||||||    
T  43184527 attctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctc 43184468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 36658206 - 36658348
Alignment:
Q  89 tcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac------ata 182  Q
    |||||||||||||||||||||||  || ||||| ||||| | ||||||| | | ||||||| |||||||||||||||||||||||| ||||      |||    
T  36658206 tcgatcgataatttttgcacattggacccaaccgaaaagccaattaacatactaacaaaaataaaaatttgggcaatctgaaaattctcacacgcaaata 36658305  T
Q  183 ggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  36658306 ggtctcggaattttatttagcacactattgacgggttcatctc 36658348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 7002725 - 7002892
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| || ||||||||||||| ||||||||  ||||||  |||||| || ||||| ||||| | |||||||||  |||||||| |||||||||| ||    
T  7002725 ggcgaccccgagcggtcgcccgggctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacatacaaaaataaaaatttggaca 7002824  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||| |||||| ||||      |||||||  |||||||||||||||||||||||||||||||||||||    
T  7002825 atctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctc 7002892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 7048596 - 7048763
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| || ||||||||||||| ||||||||  ||||||  |||||| || ||||| ||||| | |||||||||  |||||||| |||||||||| ||    
T  7048596 ggcgaccccgagcggtcgcccgggctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacatacaaaaataaaaatttggaca 7048695  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||| |||||| ||||      |||||||  |||||||||||||||||||||||||||||||||||||    
T  7048696 atctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctc 7048763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 10868585 - 10868525
Alignment:
Q  121 caaaaagtctattaacacatttacaaaaagaaaaatttgggc--aatctgaaaattgtcac 179  Q
    ||||||| | ||||||||||||||||||||||||||||||||  |||||||||||| ||||    
T  10868585 caaaaagcccattaacacatttacaaaaagaaaaatttgggcaaaatctgaaaattctcac 10868525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 10868490 - 10868456
Alignment:
Q  191 aattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||||||| ||||||||||||||||    
T  10868490 aattttatttagcacacttttgacgggttcatctc 10868456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 10876861 - 10876829
Alignment:
Q  77 ggtcgcccgggttcgatcgataatttttgcaca 109  Q
    ||||||||||| |||||||||||||||||||||    
T  10876861 ggtcgcccgggctcgatcgataatttttgcaca 10876829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 36382524 - 36382346
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  36382524 gttctaccgtatggcgaccccgggcggtcgcccgggctcgatccataatttttgcacattaaactcaaccaaaaagtccattaacacatttac-aaaaga 36382426  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||| ||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||    
T  36382425 aaaatttggacaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 36382346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 25930696 - 25930875
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| ||||||||||||  ||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  25930696 gttctaccgtatggcgaccctgggcggtcgcccgggctcgatctataatttttgcacattaaactcaacccaaaagcccattaacacatttacaaaaaga 25930795  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||| |||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||    
T  25930796 aaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 25930875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 20129311 - 20129477
Alignment:
Q  65 gcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaa 164  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||    
T  20129311 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaa 20129410  T
Q  165 tctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||||      ||||||||| ||||||||||| ||||||||||||| | ||||||||    
T  20129411 tctgaaaattgtcacacgtaaataggtcttagaattttatttggcacactattgacagtttcatctc 20129477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 66 - 225
Target Start/End: Complemental strand, 43143749 - 43143584
Alignment:
Q  66 cgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaat 165  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| | ||||||||| |||||||||||||||||||||||||    
T  43143749 cgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaat 43143650  T
Q  166 ctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||| ||||      |||||||| ||||||||||||||||||| ||||| |||||||||||    
T  43143649 ctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattgatgggttcatctc 43143584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 52 - 222
Target Start/End: Complemental strand, 29319884 - 29319708
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| ||||||| |||| | |||||||| || || |||||||||||||||||||||||| |||||||| ||||  | |||||||||||||||||||||    
T  29319884 gttctaccgtatggtgacccctggcggtcgtccaggctcgatcgataatttttgcacattagactcaacccaaaatcccattaacacatttacaaaaaga 29319785  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcat 222  Q
    |||||||| |||||||||||||||||||      ||| |||||||||||||||||||||||||||||||||||||||    
T  29319784 aaaatttgagcaatctgaaaattgtcacacacaaataagtcttggaattttatttagcacactattgacgggttcat 29319708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 30216909 - 30216742
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||| |||||   ||||||||| |||||||||||||||||||||||    
T  30216909 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgggca 30216810  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| ||||      |||| ||| |||||||||||||||||||||||||||||||||||||    
T  30216809 atctgaaaattctcacatgcaaatagatctcggaattttatttagcacactattgacgggttcatctc 30216742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 72 - 225
Target Start/End: Original strand, 48989336 - 48989495
Alignment:
Q  72 cgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaa 171  Q
    |||||||||  ||||||||||||||||||||||||||||||||| ||||  ||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  48989336 cgggcggtcaaccgggttcgatcgataatttttgcacattaaacccaactcaaaagtccattaacacacttacaaaaagaaaaatttgggcaatctgaaa 48989435  T
Q  172 attgt------cacataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||| |      || |||||||| |||||||||||||||||||||||||||||||||||||    
T  48989436 attctcatacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 48989495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 13012189 - 13012355
Alignment:
Q  65 gcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaa 164  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||| | ||||||||||||   ||||||||||||| ||||||||||||||||||||    
T  13012189 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagattcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaa 13012288  T
Q  165 tctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    | |||||||||||||      ||||||||||||||||||||| ||||||||||||| | ||||||||    
T  13012289 tttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 13012355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 47500774 - 47500940
Alignment:
Q  65 gcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaa 164  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||   |||||||||||||  |||||||||||||||||||    
T  47500774 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttatgaaaagaaaaatttgggcaa 47500873  T
Q  165 tctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    | |||||||||||||      ||||||||||||||||||||| ||||||||||||| | ||||||||    
T  47500874 tttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 47500940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 67 - 225
Target Start/End: Complemental strand, 3293060 - 3292896
Alignment:
Q  67 gacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatc 166  Q
    |||| |||||||||||||||| |||||||||||||||||| ||||| || ||||| ||||| | ||||||||| ||||||||||||||||||||||||||    
T  3293060 gaccccgggcggtcgcccgggctcgatcgataatttttgcccattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatc 3292961  T
Q  167 tgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||||||| ||||      |||||||| ||||||||||||||||||||||||||| |||||||||    
T  3292960 tgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgagttcatctc 3292896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 40529001 - 40529179
Alignment:
Q  52 gttctatcgtatggcgacctcgggcg--gtcgcccgggttcgatcgataatttttgcacattaaactcaacc-aaaaagtctattaacacatttacaaaa 148  Q
    |||||| ||||||||||||  |||||  |||| ||||  ||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||    
T  40529001 gttctaccgtatggcgaccctgggcgaggtcgtccggactcgatcgataatttttgcacattaaactcaacctaaaaactc-attaacacatttacaaaa 40529099  T
Q  149 agaaaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcat 222  Q
    |||||||||||| |||| |||||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  40529100 agaaaaatttggacaatttgaaaattgtcacatgcaaataggtcttggaattttatttagcacactattgacgggttcat 40529179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 65 - 225
Target Start/End: Complemental strand, 26439445 - 26439279
Alignment:
Q  65 gcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaa 164  Q
    |||||| |||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||| | ||||||||||||| ||||||||||||||||||||    
T  26439445 gcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaa 26439346  T
Q  165 tctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||||      |||||||||| ||||||||||  |||||||||||| | ||||||||    
T  26439345 tctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 26439279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 65 - 225
Target Start/End: Complemental strand, 34407450 - 34407284
Alignment:
Q  65 gcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaa 164  Q
    |||||| |||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||| | ||||||||||||| ||||||||||||||||||||    
T  34407450 gcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaa 34407351  T
Q  165 tctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||||      |||||||||| ||||||||||  |||||||||||| | ||||||||    
T  34407350 tctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 34407284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 6690402 - 6690235
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| |||||||||||||||| |||||||||||||||||| ||||| || ||||| ||||| | ||||||||| |||||||||||||||||||||||    
T  6690402 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 6690303  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    | ||||||||| ||||      |||||||| | |||||||||||||||||||||||||||||| ||||    
T  6690302 aactgaaaattctcacacgcaaataggtctcgaaattttatttagcacactattgacgggttcgtctc 6690235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 50205236 - 50205079
Alignment:
Q  72 cgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaa 171  Q
    |||||||||||||| | |||||||||||||||||||||||| |  ||||| ||||| | ||||||||| ||||||||||||||| |||| ||||||||||    
T  50205236 cgggcggtcgcccgagctcgatcgataatttttgcacattagatccaacccaaaagccaattaacacacttacaaaaagaaaaaattggacaatctgaaa 50205137  T
Q  172 attgtcac------ataggtcttggaattttatttagcacactattgacgggttcatc 223  Q
    ||| ||||      ||||||||||||||||||||||||||||||||||||||||||||    
T  50205136 attctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatc 50205079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 17511412 - 17511233
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| | ||||||||||| |  |||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||    
T  17511412 gttctaccgtatggcgacc-ctggcggtcgcccagactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaaga 17511314  T
Q  152 aaaatttgggcaatctgaaaattgt------cacataggtcttgg-aattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||| ||||||||||      || ||||||||||| |||||||||||||||| ||||||  ||||||||||    
T  17511313 aaaatttgggcaatttgaaaattgttacacgcaaataggtcttggaaattttatttagcacattattgatcggttcatctc 17511233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 10353051 - 10352884
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| | |||||||||||||| || ||||||||||||||||||||| || ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  10353051 ggcgacccctggcggtcgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagtccattaacacatttacaaaaggaaaaatttgggca 10352952  T
Q  164 atctgaaaattgt------cacataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| |      || |||||||| ||||||||||||||||||| | || ||| ||||||||    
T  10352951 atctgaaaattcttacacgcaaataggtctcggaattttatttagcacaccagtgtcggattcatctc 10352884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 65 - 225
Target Start/End: Complemental strand, 30077797 - 30077631
Alignment:
Q  65 gcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaa 164  Q
    |||||||||||||||||||| || || |||||||| |||||||||||| || ||||||||||||  |||||||||||||||||||||||||||||| |||    
T  30077797 gcgacctcgggcggtcgcccaggctcaatcgataaattttgcacattagacccaaccaaaaagttcattaacacatttacaaaaagaaaaatttggacaa 30077698  T
Q  165 tctgaaaattgt------cacataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||| |      || |||||||||| ||||||||||||||||||| || ||| ||||||||    
T  30077697 tctgaaaatttttacacacaaataggtcttgaaattttatttagcacactagtgccggattcatctc 30077631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 43355905 - 43356071
Alignment:
Q  65 gcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaa 164  Q
    |||||| | ||| |||||||||| ||| |||||||||||||||||||| |||||||| ||||| | ||||||||||||| ||||||||||||||||||||    
T  43355905 gcgaccccaggcagtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaa 43356004  T
Q  165 tctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||||      |||||||||| ||||||||||  |||||||||||| | ||||||||    
T  43356005 tctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 43356071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 29996138 - 29995983
Alignment:
Q  76 cggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattg 175  Q
    |||||| ||||  ||||||||||||||||| |||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||     
T  29996138 cggtcgtccggactcgatcgataatttttgtacattagactcaaccaaaaagtccattaacacatttacgaaaagaaaaatttgggcaatctgaaaattc 29996039  T
Q  176 t------cacataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |      || |||| ||| ||||||||||| |||||||||||||||| ||||||||    
T  29996038 ttgcacgcaaatagttctcggaattttattaagcacactattgacggattcatctc 29995983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 72 - 213
Target Start/End: Complemental strand, 42333935 - 42333788
Alignment:
Q  72 cgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaa 171  Q
    |||||||||| ||||| || ||||||||||||||||||||| |||||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||    
T  42333935 cgggcggtcgtccgggctcaatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 42333836  T
Q  172 attgtcac------ataggtcttggaattttatttagcacactattga 213  Q
    ||| ||||      |||||||| ||||||||||||||||||| |||||    
T  42333835 attctcacacgcaaataggtctcggaattttatttagcacacaattga 42333788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 123 - 225
Target Start/End: Original strand, 6235579 - 6235687
Alignment:
Q  123 aaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgg 216  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||      |||||||||||||||||||||||||||||||||||||    
T  6235579 aaaagtccattaacacatttacaaaaagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgg 6235678  T
Q  217 gttcatctc 225  Q
    |||||||||    
T  6235679 gttcatctc 6235687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 81 - 225
Target Start/End: Original strand, 44156668 - 44156818
Alignment:
Q  81 gcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgt---- 176  Q
    ||||||| || | ||||||||||||||||||| || ||||| ||||| | ||||||||| |||||||||||||| ||||| ||||||||||||| |        
T  44156668 gcccgggctcaaccgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaattttggacaatctgaaaattctctca 44156767  T
Q  177 --cacataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
      || |||||||| |||||||||||||||||||||||||||||||||||||    
T  44156768 cgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 44156818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 91 - 225
Target Start/End: Complemental strand, 28877390 - 28877250
Alignment:
Q  91 gatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac------atagg 184  Q
    |||||||||||||||||||||| | |||||| |||||   ||||||||  ||| ||||||||||||||||| ||||| |||||| ||||      |||||    
T  28877390 gatcgataatttttgcacattagattcaacctaaaagctaattaacacgcttataaaaagaaaaatttgggaaatctaaaaattctcacacgcaaatagg 28877291  T
Q  185 tcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||| ||||||||||||||||||||||||| |||||||||||    
T  28877290 tctcggaattttatttagcacactattgatgggttcatctc 28877250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 26448078 - 26448219
Alignment:
Q  89 tcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgt------cacata 182  Q
    ||||||||||||||||||||||||||   |||| ||||||| ||||||||| ||||||||| |||||||||||||||||||||||| |      || |||    
T  26448078 tcgatcgataatttttgcacattaaatctaacccaaaagtccattaacacacttacaaaaa-aaaaatttgggcaatctgaaaattctcatacacaaata 26448176  T
Q  183 ggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||| | |||||||||||||||||||||||| ||| || |||||    
T  26448177 ggtttcggaattttatttagcacactattggcggatttatctc 26448219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 35545978 - 35546120
Alignment:
Q  89 tcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac------ata 182  Q
    |||||||| ||||||||| ||| | || ||||| ||||| | ||||||||| |||||||||||||| ||||||||||||||||||| ||||      ||     
T  35545978 tcgatcgacaatttttgcgcatcagacccaacccaaaagccaattaacacacttacaaaaagaaaattttgggcaatctgaaaattctcacacgcaaatg 35546077  T
Q  183 ggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||||  |||||||||||||||||||||||| |||||||||||    
T  35546078 ggtctctgaattttatttagcacactattgatgggttcatctc 35546120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 1817752 - 1817884
Alignment:
Q  99 atttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgt------cacataggtcttggaa 192  Q
    |||||||||||||| |  ||| | ||||||| ||||| ||||||| ||||||||||||||||||||||| |||||| |      || |||||||| ||||    
T  1817752 atttttgcacattagatccaatccaaaagtccattaatacatttataaaaagaaaaatttgggcaatctaaaaattcttacacgcaaataggtctcggaa 1817851  T
Q  193 ttttatttagcacactattgacgggttcatctc 225  Q
    ||||||||| |||||||||| ||| ||||||||    
T  1817852 ttttatttaacacactattgtcggattcatctc 1817884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 45194201 - 45194276
Alignment:
Q  89 tcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaa 164  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| ||||  ||||||||    
T  45194201 tcgatcaataatttttgcacattaaactcaacccaaaagtccattaacacacttacaaaaaaaaaatattgggcaa 45194276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 30109958 - 30110052
Alignment:
Q  66 cgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgg 160  Q
    ||||| ||| |||||||||||  |||||||||||||||||||||||| || ||| |  |||| | ||||||||| ||||||||||||||||||||    
T  30109958 cgaccccggacggtcgcccggactcgatcgataatttttgcacattagacccaaacccaaagaccattaacacacttacaaaaagaaaaatttgg 30110052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 161
Target Start/End: Original strand, 48129978 - 48130063
Alignment:
Q  76 cggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttggg 161  Q
    |||||| ||||| ||||||||||||||||||| |||| || ||||| |||||   ||||||||| |||||||||||||||||||||    
T  48129978 cggtcgaccgggctcgatcgataatttttgcatattagacccaacccaaaagctcattaacacacttacaaaaagaaaaatttggg 48130063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 6254567 - 6254637
Alignment:
Q  87 gttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatt 157  Q
    ||||||||||||||||||||||||||||| ||||| ||||| | ||||||||| || |||||| |||||||    
T  6254567 gttcgatcgataatttttgcacattaaacccaacccaaaagacaattaacacacttgcaaaaaaaaaaatt 6254637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 27363356 - 27363446
Alignment:
Q  59 cgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaa 149  Q
    ||||||||||||||||||||||||||||| ||||||||   |||||||| ||||  | ||||| ||||| | ||||||||| |||||||||    
T  27363356 cgtatggcgacctcgggcggtcgcccgggctcgatcgaatttttttgcatattaggcccaacccaaaagcccattaacacacttacaaaaa 27363446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 13392970 - 13392893
Alignment:
Q  142 tacaaaaagaaaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattga 213  Q
    |||||||||||||||||||||||||| |||||| ||||      |||||||| | |||||||||||||||||||||||    
T  13392970 tacaaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 13396109 - 13396032
Alignment:
Q  142 tacaaaaagaaaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattga 213  Q
    |||||||||||||||||||||||||| |||||| ||||      |||||||| | |||||||||||||||||||||||    
T  13396109 tacaaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13396032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 30110108 - 30110142
Alignment:
Q  191 aattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||||||||||||||||||||||||    
T  30110108 aattttatttagcacactattgacgggttcatctc 30110142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 48130111 - 48130145
Alignment:
Q  191 aattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||||||||||||||||||||||||    
T  48130111 aattttatttagcacactattgacgggttcatctc 48130145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 7769328 - 7769369
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttg 105  Q
    ||||||| | |||||||||||||| |||||||||||||||||    
T  7769328 ggcgaccccaggcggtcgcccgggctcgatcgataatttttg 7769369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 49908819 - 49908782
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatt 101  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  49908819 ggcgaccccgggcggtcgcccgggctcgatcgataatt 49908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 6212065 - 6212029
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataat 100  Q
    |||||||||||||||||||||| | ||||||||||||    
T  6212065 ggcgacctcgggcggtcgcccgagctcgatcgataat 6212029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 19390134 - 19390313
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| ||| |||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  19390134 gttctaccgtgtggcgaccccgggcggtcgtccgggttcgatcgataatttttgcacattagactcaacctaaaagtctattaacacatttacaaaaaga 19390233  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||| | ||||||||    
T  19390234 aaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctc 19390313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 34084301 - 34084122
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| |||||||||||||||  |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  34084301 gttctaccgtatggcgaccccgggcggtcgcccggactcgatcgataatttttgcacattaaattcaaccaaaaagtccattaacacatttacaaaaaga 34084202  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||| |||||||| ||||      |||||||||||||||||||||||||||||||||| |||||||||||    
T  34084201 aaaatttgggcaatatgaaaattatcacacgcaaataggtcttggaattttatttagcacactattgatgggttcatctc 34084122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 45182981 - 45183148
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| |||||||||||||||| |||||||||||||||||| ||||| || ||||| ||||| | ||||||||| |||||||||||||||||||||||    
T  45182981 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 45183080  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| ||||      |||||||| |||||||||||||||||||||||||||||||||||||    
T  45183081 atctgaaaattctcacacacaaataggtctcggaattttatttagcacactattgacgggttcatctc 45183148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 6269585 - 6269427
Alignment:
Q  72 cgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaa 171  Q
    |||||||||| ||||  |||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||    
T  6269585 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaa 6269486  T
Q  172 attgtcac------ataggtcttggaattttatttagcacactattgacgggttcatct 224  Q
    ||||||||      ||||||||||||||||||||||||||||||||||| | |||||||    
T  6269485 attgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatct 6269427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 22968623 - 22968444
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| ||| | |||||| |||||||||| ||||| |||||||||||||||||||||||| ||| |||| ||||| | |||||||||||||||||||||    
T  22968623 gttctaccgtgtagcgaccccgggcggtcgtccgggctcgatcgataatttttgcacattagacttaacccaaaagcccattaacacatttacaaaaaga 22968524  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||||| |||||||||||      |||||||||| |||||||||||||||||||||||| | ||||||||    
T  22968523 aaaatttgggcaatctaaaaattgtcacacgtaaataggtcttgaaattttatttagcacactattgacagtttcatctc 22968444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 72 - 225
Target Start/End: Complemental strand, 11018371 - 11018212
Alignment:
Q  72 cgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaa 171  Q
    ||||||||||||| || |||||||||||||||||||||||| |||||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||    
T  11018371 cgggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 11018272  T
Q  172 attgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||| ||||      ||||||||  |||||||||||||||||| |||||||||||||||||    
T  11018271 attctcacacgcaaataggtctcagaattttatttagcacacaattgacgggttcatctc 11018212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 39771791 - 39771957
Alignment:
Q  65 gcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaa 164  Q
    |||||| |||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||| | ||||||||||||| ||||||||||||||||||||    
T  39771791 gcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaa 39771890  T
Q  165 tctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||||      |||||||||| ||||||||||  |||||||||||| | ||||||||    
T  39771891 tctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 39771957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 6931061 - 6930894
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| ||| |||||||||||| |||||||||||||||||| ||||| |  ||||| ||||| | |||||||||||||||||||||||||||| ||||    
T  6931061 ggcgaccccggacggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacatttacaaaaagaaaaatttaggca 6930962  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| ||||      |||||||| ||||||||||||||||||||||||||| |||||||||    
T  6930961 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgagttcatctc 6930894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 40081917 - 40081741
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| ||||||||||| || || ||||||||||| ||||||||||||||||| |||||| ||||||||||||  || |||||||||||||||||||||    
T  40081917 gttctaccgtatggcgac-tctggaggtcgcccgggctcgatcgataatttttgaacattagactcaaccaaaagctc-attaacacatttacaaaaaga 40081820  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||| |||||||||||||      |||| |||||| ||||| ||||||||||||||||||||||||||||    
T  40081819 aaaatttgggcaatttgaaaattgtcacacgcaaatagatcttgg-attttttttagcacactattgacgggttcatctc 40081741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 45335875 - 45336041
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    |||||||||||||||||||||||  || ||||||||||||| ||||||| || ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  45335875 ggcgacctcgggcggtcgcccggactcaatcgataatttttacacattagacccaaccaaaaagtc-attaacacatttacaaaaagaaaaatctgggca 45335973  T
Q  164 atctgaaaattgt------cacataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| |      || |||||||||||||||||||||||||||||| || ||| ||||||||    
T  45335974 atctgaaaattcttacacgcaaataggtcttggaattttatttagcacactagtgccggattcatctc 45336041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 73 - 225
Target Start/End: Original strand, 27935187 - 27935345
Alignment:
Q  73 gggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaa 172  Q
    |||| |||||||||| ||||||||||||||||||||||||||| ||||| |||||   ||||||||| ||||||||||||||||||||||||||||||||    
T  27935187 gggcagtcgcccgggctcgatcgataatttttgcacattaaacccaacccaaaagctcattaacacacttacaaaaagaaaaatttgggcaatctgaaaa 27935286  T
Q  173 ttgtc------acataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    || ||      | |||||||| |||||||||||||||| ||||||||||||||||||||    
T  27935287 ttctcatacgaaaataggtctcggaattttatttagcatactattgacgggttcatctc 27935345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 72 - 209
Target Start/End: Complemental strand, 19565660 - 19565517
Alignment:
Q  72 cgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaa 171  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |||||||||| || |||||||||||||||||||||||||||||| ||||||||||    
T  19565660 cgggcggtcgcccgggttcaatcgataatttttgcacattagacccaaccaaaaaatccattaacacatttacaaaaagaaaaatttggacaatctgaaa 19565561  T
Q  172 attgt------cacataggtcttggaattttatttagcacacta 209  Q
    ||| |      || |||||||| |||||||||||||||||||||    
T  19565560 attcttacacgcaaataggtctcggaattttatttagcacacta 19565517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 6503736 - 6503569
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||| |||| |||||||| ||||| | |||| |||| ||||||||||||||||||  |||    
T  6503736 ggcgaccccgggcggtcgcccgggctcgatcgattatttttgcaaattagactcaacccaaaagccaattagcacacttacaaaaagaaaaatttaagca 6503637  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| ||||      |||||||| ||| ||||||||||||||| ||||| |||||||||||    
T  6503636 atctgaaaattctcacaggcaaataggtctcggatttttatttagcacacaattgatgggttcatctc 6503569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 33040953 - 33041120
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| ||||||||||| |||| ||||| ||||||||||||| |||| || ||||| |||||   ||||||||| |||||||||||||||||||  ||    
T  33040953 ggcgaccccgggcggtcgctcgggctcgattgataatttttgcatattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgaaca 33041052  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    || |||||||| ||||      |||||||| |||||||||||||||||||||||||||||||||||||    
T  33041053 atttgaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 33041120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 35514266 - 35514429
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| ||| | || |  ||||| ||||||| ||||||||    |||||||||||||||||| ||    
T  35514266 ggcgaccccggacggtcgtccgggctcgatcgataattttcgcatactagatccaacccaaaagtccattaacac----acaaaaagaaaaatttggaca 35514361  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    || |||||||| ||||      |||||||| |||||||||||| ||||||||||||||||||||||||    
T  35514362 atatgaaaattctcactcgcaaataggtctaggaattttattttgcacactattgacgggttcatctc 35514429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 22922152 - 22922217
Alignment:
Q  59 cgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaa 124  Q
    |||||||||| | ||||||||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  22922152 cgtatggcgatcccgggcggtcgctcgggctcgatcgatcatttttgcacattaaactcaaccaaa 22922217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 22922217 - 22922262
Alignment:
Q  180 ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||    
T  22922217 atagatcttggaattttatttaacacactattgacgggttcatctc 22922262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 5135294 - 5135365
Alignment:
Q  89 tcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgg 160  Q
    ||||||||| ||||||| |||||| || ||||| |||||   ||||||||| ||||||||||||||||||||    
T  5135294 tcgatcgattatttttgtacattagacccaacctaaaagctcattaacacacttacaaaaagaaaaatttgg 5135365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 5135421 - 5135455
Alignment:
Q  191 aattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||||||||||||||||||||||||    
T  5135421 aattttatttagcacactattgacgggttcatctc 5135455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 15838274 - 15838449
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  15838274 gttctaccgtatggcgaccccgggcggtcacccgggctcgattgataatttttgcacattaaactcaaccaaaaagtccattaacacatttac-aaaaga 15838372  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcat 222  Q
    ||||||||||||||||||||||| ||||      |||||||||||||||||||||||||||||||||||||||||||    
T  15838373 aaaatttgggcaatctgaaaattttcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 15838449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 29728565 - 29728386
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| ||| |||||||||| | ||||||||||| |||||||||||| |||||||| |||||   |||||||||||||||||||||    
T  29728565 gttctaccgtatggcgaccccggacggtcgcccgtgctcgatcgataaattttgcacattagactcaacccaaaagctcattaacacatttacaaaaaga 29728466  T
Q  152 aaaatttgggcaatctgaaaattgt------cacataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||||||||||||||      || ||||||||| ||||||||||||||||||||||||||||||||||||    
T  29728465 aaaatttgggcaatctgaaaattgtgacacgcaaataggtcttcgaattttatttagcacactattgacgggttcatctc 29728386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 3648973 - 3648794
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||| |  || | |||||||||| |||||||||||||||| ||||||| |||||||| ||||| | |||||||||||||||||||||    
T  3648973 gttctaccgtatggcgatccgggacagtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaaaaga 3648874  T
Q  152 aaaatttgggcaatctgaaaattgtcaca------taggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||| |||||||||||||||||||||||||      ||||| |||||||||||||||||||||||||||||||||||||||    
T  3648873 aaattttgggcaatctgaaaattgtcacacgcaagtaggttttggaattttatttagcacactattgacgggttcatctc 3648794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 72 - 225
Target Start/End: Complemental strand, 16788184 - 16788025
Alignment:
Q  72 cgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaa 171  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| | ||||||||| ||||||||||||||||||||||||||| |||    
T  16788184 cgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatcttaaa 16788085  T
Q  172 attgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    | | ||||      ||||||||||||||||||||||||||||||||||||||||||||||    
T  16788084 actctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 16788025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 63 - 225
Target Start/End: Complemental strand, 34136993 - 34136825
Alignment:
Q  63 tggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggc 162  Q
    |||||||| || ||||||||||||| |||||||||||||||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||    
T  34136993 tggcgaccccgagcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggc 34136894  T
Q  163 aatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||| ||||      |||||||| | ||||||||||||||||| ||||| |||||||||||    
T  34136893 aatctgaaaattctcacacgcaaataggtctcgaaattttatttagcacacaattgatgggttcatctc 34136825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 39914516 - 39914681
Alignment:
Q  65 gcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaa 164  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||   ||||||||||||| ||||| ||||||||||||||    
T  39914516 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaa-aaaaatttgggcaa 39914614  T
Q  165 tctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    | |||||||||||||      ||||||||||||||||||||| ||||||||||||| | ||||||||    
T  39914615 tttgaaaattgtcacaagtaaataggtcttggaattttatttggcacactattgacagtttcatctc 39914681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 4404008 - 4404175
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| | |||||||||||||| |||||||||||||||||||||||| |||||||| ||||| | ||||||| | |||||||||||||||||||||||    
T  4404008 ggcgaccccaggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacatacttacaaaaagaaaaatttgggca 4404107  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||| |||||| ||||      |||||||| ||||||||||||||||||| ||||| |||||||||||    
T  4404108 atctaaaaattctcacacgcaaataggtctcggaattttatttagcacacaattgatgggttcatctc 4404175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 23402108 - 23402275
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| |||||||||||||||| |||||||||||| |||||| |||| || ||||| ||||| | ||||||||| |||||||||||||||||||||||    
T  23402108 ggcgaccccgggcggtcgcccgggctcgatcgataatctttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 23402207  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| ||||      |||||||| | ||||||||||| |||||||||||| ||||||||||    
T  23402208 atctgaaaattctcacacgcaaataggtctcgaaattttatttaacacactattgactggttcatctc 23402275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 36408551 - 36408718
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |  ||||| ||||||| |||||||||||||||||||||||| ||| ||||    
T  36408551 ggcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagatccaacccaaaagtccattaacacatttacaaaaagaaaatttttggca 36408650  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    || |||||||| | ||      ||||||||  |||||||||||| |||||||||| ||| ||||||||    
T  36408651 atttgaaaattcttacacgctaataggtctcagaattttatttaacacactattgccggattcatctc 36408718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 9877245 - 9877374
Alignment:
Q  89 tcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac------ata 182  Q
    ||||| |||||||||||||||||| ||  |||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||      |||    
T  9877245 tcgattgataatttttgcacattagacctaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacatgcaaata 9877344  T
Q  183 ggtcttggaattttatttagcacactattg 212  Q
    ||||| | ||||||||||||||||||||||    
T  9877345 ggtctcgaaattttatttagcacactattg 9877374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 225
Target Start/End: Original strand, 42230971 - 42231104
Alignment:
Q  96 ataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgt------cacataggtcttg 189  Q
    |||||||||||||||||||  ||||  ||||||| ||||||||  ||||||||||||||||||||||||| |||||||| |      || ||||||||      
T  42230971 ataatttttgcacattaaatccaactcaaaagtccattaacac--ttacaaaaagaaaaatttgggcaatttgaaaattctcatatgcaaataggtctca 42231068  T
Q  190 gaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||||||||||||||||||| ||||||||    
T  42231069 gaattttatttagcacactattgacggattcatctc 42231104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 3435285 - 3435381
Alignment:
Q  80 cgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggc--aatctgaaaatt 174  Q
    |||||||| | |||||||||||||||||||||| || ||||| ||||  | ||||||||| ||||||||||||||||||||||  ||||||||||||    
T  3435285 cgcccgggcttgatcgataatttttgcacattagacccaacccaaaaacccattaacacacttacaaaaagaaaaatttgggcaaaatctgaaaatt 3435381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 2729363 - 2729196
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| ||||||| |||||||| |||||||||||||||| |||||||||  ||| | ||||| | ||||||||| ||| |||||||||  ||| ||||    
T  2729363 ggcgaccccgggcggacgcccgggctcgatcgataatttttacacattaaatccaatccaaaagcccattaacacacttataaaaagaaattttttggca 2729264  T
Q  164 atctgaaaattgt------cacataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    || |||||| | |      || ||||||||   ||||||||||||||||||||||| || ||||||||    
T  2729263 atttgaaaactctcatacgcaaataggtctcaaaattttatttagcacactattgatggattcatctc 2729196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 40470509 - 40470475
Alignment:
Q  191 aattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||||||||||||||||||||||||    
T  40470509 aattttatttagcacactattgacgggttcatctc 40470475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 40470635 - 40470567
Alignment:
Q  89 tcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatt 157  Q
    |||||||||||||||||||||||| || |||   ||||||| ||||||||| ||| ||||| |||||||    
T  40470635 tcgatcgataatttttgcacattagacccaaatcaaaagtccattaacacacttataaaaaaaaaaatt 40470567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 10033915 - 10034091
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| ||| || ||||||||| |||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||    
T  10033915 gttctaccgtatggcgaccccggacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaaga 10034014  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcat 222  Q
    ||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  10034015 aaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 10034091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 13817965 - 13818144
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||    
T  13817965 gttctaccgtatggcgaccccgggcggtcgctcgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaaga 13818064  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||||||||||||||||||||      ||||||||||||| |||||||||||||||||||||||| |||||||    
T  13818065 aaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaaatttatttagcacactattgacgggctcatctc 13818144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 52 - 224
Target Start/End: Complemental strand, 1776555 - 1776377
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||| ||||| |||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||    
T  1776555 gttctaccgtatgacgaccccgggcggtcgcccgggctcgatcgataatttttgtacattaaagtcaaccaaaaagtccattaacacatttacaaaaaga 1776456  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatct 224  Q
    |||||||||||||| |||||||||||||      ||||||||||||||||||||||||||||||| ||| |||||||||    
T  1776455 aaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactatcgacaggttcatct 1776377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 65 - 225
Target Start/End: Complemental strand, 26283484 - 26283318
Alignment:
Q  65 gcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaa 164  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  26283484 gcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacatttataaaaagaaaaatttgggcaa 26283385  T
Q  165 tctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||||      ||||||||||||||||||||| ||||||||||||| | ||||||||    
T  26283384 tctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 26283318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 39434684 - 39434863
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| ||| ||||||||  ||||||||||||||| |||||||||||||||| ||||||| |||||||| ||||| | |||||||||||||||||| ||    
T  39434684 gttctaccgtgtggcgaccctgggcggtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaaatga 39434783  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||||||||||||||||||||      ||||||||| ||||||||||||||||||||||||| | ||||||||    
T  39434784 aaaatttgggcaatctgaaaattgtcacatgtaaataggtctttgaattttatttagcacactattgacagtttcatctc 39434863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 31680367 - 31680534
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| |||||||||||||||| |||||||||||||||| | ||||| || ||||| ||||| | ||||||||| |||||||||||||||||||||||    
T  31680367 ggcgaccccgggcggtcgcccgggctcgatcgataatttttccgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 31680466  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| ||||      |||||||| |||||||||||||||||||||||||||||||||||||    
T  31680467 atctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 31680534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 36293800 - 36293621
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| ||| |||||||| || ||||||| ||||  ||||||||||||||||| |||||| |||||||| ||||| | |||||||||||||||||||||    
T  36293800 gttctaccgtgtggcgaccccgagcggtcgtccggactcgatcgataatttttgtacattagactcaacccaaaagcccattaacacatttacaaaaaga 36293701  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||| || | ||||||||    
T  36293700 aaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactatttacagtttcatctc 36293621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 37254641 - 37254808
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| | ||||||||||| || |||||||||||||||||||||||| || ||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  37254641 ggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagacccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggca 37254740  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| ||||      |||||||| |||||||||||||||||| ||||||||||||||||||    
T  37254741 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatctc 37254808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 61 - 222
Target Start/End: Complemental strand, 39657676 - 39657509
Alignment:
Q  61 tatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgg 160  Q
    |||||||||| | | ||||||  |||| ||||| |||||||||||||||||| |||||||| |||||   ||||||||||||||||||||||||||||||    
T  39657676 tatggcgaccccagacggtcgttcgggctcgattgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgg 39657577  T
Q  161 gcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcat 222  Q
    |||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  39657576 gcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 39657509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 52 - 209
Target Start/End: Complemental strand, 3155810 - 3155647
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    ||||||||||||||||| | ||||||||||| |||| |||||| ||||||||||||||||  |||||||| ||||||| ||||||||||||| |||||||    
T  3155810 gttctatcgtatggcgatcccgggcggtcgctcgggctcgatcaataatttttgcacattcgactcaacctaaaagtccattaacacatttataaaaaga 3155711  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacacta 209  Q
    ||||||||| ||||||||||||||||||      |||| |||||||||||||||||||||||||    
T  3155710 aaaatttggacaatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacacta 3155647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 17332718 - 17332551
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| |||||| ||||||||| ||||||||||||||||||| |||| || ||||| ||||| | ||||||||| |||||||||||||||||||||||    
T  17332718 ggcgaccccgggcgttcgcccgggctcgatcgataatttttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 17332619  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| ||||      |||||||| |||||||||||||||||||||||||||| ||||||||    
T  17332618 atctgaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctc 17332551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 16155015 - 16155164
Alignment:
Q  82 cccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac-- 179  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||| | ||||||||||||| |||||||||||||| ||||||||||||||||||||      
T  16155015 cccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttaggcaatctgaaaattgtcacac 16155114  T
Q  180 ----ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
        ||||||||||||||||||||||||||||||||||| | ||||||||    
T  16155115 gcaaataggtcttggaattttatttagcacactattgacagattcatctc 16155164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 78 - 225
Target Start/End: Original strand, 33430335 - 33430488
Alignment:
Q  78 gtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtc 177  Q
    |||||||||| |||||||||||||||||| ||||| || ||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||| ||    
T  33430335 gtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctc 33430434  T
Q  178 ac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||      |||||||| |||||||||||||||||||||||||||||||||||||    
T  33430435 acacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 33430488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 59 - 225
Target Start/End: Original strand, 19985934 - 19986106
Alignment:
Q  59 cgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaattt 158  Q
    |||||| |||||||||||||||| ||| | |||||||||||||||||||||||| | |||||| ||||||| |||| |||||||||||||||||||||||    
T  19985934 cgtatgacgacctcgggcggtcgtccgagctcgatcgataatttttgcacattagattcaacccaaaagtccattagcacatttacaaaaagaaaaattt 19986033  T
Q  159 gggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||| ||||| |||||| ||||      |||||||||| ||||||||||| |||||||||||| ||||||||||    
T  19986034 gggtaatctaaaaattatcacacgcaaataggtcttgaaattttatttaacacactattgacaggttcatctc 19986106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 72 - 225
Target Start/End: Complemental strand, 12279019 - 12278860
Alignment:
Q  72 cgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaa 171  Q
    |||||||||||||||  |||||||||||||||||||||||| || ||||| ||| | | ||||||||| |||||||||||||||||||||||||||||||    
T  12279019 cgggcggtcgcccggactcgatcgataatttttgcacattagacccaacccaaaggccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 12278920  T
Q  172 attgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||| ||||      |||||||| |||||||||||||||||||||||||| ||||||||||    
T  12278919 attctcacacgcaaataggtctcggaattttatttagcacactattgacaggttcatctc 12278860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 94 - 222
Target Start/End: Complemental strand, 16334013 - 16333879
Alignment:
Q  94 cgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac------ataggtct 187  Q
    ||||||||||||||||||| | |||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||    
T  16334013 cgataatttttgcacattagattcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtct 16333914  T
Q  188 tggaattttatttagcacactattgacgggttcat 222  Q
    ||||||||||||||||||||||||||||| |||||    
T  16333913 tggaattttatttagcacactattgacggattcat 16333879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 31501883 - 31501716
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| |||||| | ||||||| |||||||||||||||||||||||| || ||||| ||||| | ||||||||| |||||||||||||||||||||||    
T  31501883 ggcgaccccgggcgattgcccgggctcgatcgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 31501784  T
Q  164 atctgaaaattgt------cacataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| |      || |||||||| | ||||||||||||||||||||||| | |||||||||    
T  31501783 atctgaaaattctcgcacgcaaataggtctcgaaattttatttagcacactattgatgagttcatctc 31501716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 72 - 225
Target Start/End: Original strand, 36291379 - 36291538
Alignment:
Q  72 cgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaa 171  Q
    |||||||||| |||||||||||| ||||||||||||||||| |   |||| ||||||  ||||||||||||||||||||||||||||||||||||| |||    
T  36291379 cgggcggtcgtccgggttcgatcaataatttttgcacattagatctaacctaaaagttcattaacacatttacaaaaagaaaaatttgggcaatctcaaa 36291478  T
Q  172 attgt------cacataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||| |      || ||||||||  |||||||||||| |||||||||||||||||||||||    
T  36291479 attattacacacaaataggtctcagaattttatttaacacactattgacgggttcatctc 36291538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 43068896 - 43069044
Alignment:
Q  83 ccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac--- 179  Q
    ||||| |||||| ||||||||| ||||||| || ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||       
T  43068896 ccgggctcgatcaataattttttcacattagacccaacccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattcttacatg 43068995  T
Q  180 ---ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
       ||| |||| |||||||||||||||||||||||| ||| ||||||||    
T  43068996 taaataagtctcggaattttatttagcacactattgccggattcatctc 43069044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 28801300 - 28801384
Alignment:
Q  77 ggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttggg 161  Q
    |||||||| || |||||||||||||||||||||||| |  ||| | ||||| | ||||||||| |||||||||||||||||||||    
T  28801300 ggtcgccctggctcgatcgataatttttgcacattagatccaaaccaaaagcccattaacacacttacaaaaagaaaaatttggg 28801384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 14316646 - 14316694
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataat 100  Q
    |||||| |||||||||| ||||||||||||||| || ||||||||||||    
T  14316646 gttctaccgtatggcgatctcgggcggtcgcccaggctcgatcgataat 14316694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 35962703 - 35962879
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| | |||||||| ||||| |||||||||||||||||||||||| |||||||| |||||  ||||||||||||||||||||||    
T  35962703 gttctaccgtatggcgaccccaggcggtcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcttattaacacatttacaaaaaga 35962802  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcat 222  Q
    ||| ||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  35962803 aaattttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcat 35962879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 42439974 - 42440150
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| |||| ||||| | |||||||||||||||||||||    
T  42439974 gttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactaaacccaaaagcccattaacacatttacaaaaaga 42440073  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcat 222  Q
    ||||||||||||||||||||||||||||      |||||||||| |||||||||||||||||||||||||| |||||    
T  42440074 aaaatttgggcaatctgaaaattgtcacacgcaaataggtcttgcaattttatttagcacactattgacggattcat 42440150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 52 - 222
Target Start/End: Complemental strand, 32127320 - 32127144
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| ||| |||||   |||||||||||||||||||||    
T  32127320 gttctagcgtatggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattaaactcgacccaaaagctcattaacacatttacaaaaaga 32127221  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcat 222  Q
    ||||||| ||||||||||||||||||||      |||| ||||||||||||||||||||||||||||||||||||||    
T  32127220 aaaatttaggcaatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacactattgacgggttcat 32127144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 67 - 225
Target Start/End: Complemental strand, 41251798 - 41251634
Alignment:
Q  67 gacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatc 166  Q
    |||| |||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||||    
T  41251798 gaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatc 41251699  T
Q  167 tgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||      ||||||||||||||||||||||||||||||||||| | ||||||||    
T  41251698 tgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctc 41251634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 65 - 225
Target Start/End: Complemental strand, 6403970 - 6403804
Alignment:
Q  65 gcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaa 164  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  6403970 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacatttataaaaagaaaaatttgggcaa 6403871  T
Q  165 tctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||||      ||||||||||||||||||||| ||||||||||||| | ||||||||    
T  6403870 tctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 6403804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 17445218 - 17445041
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| ||| ||||||||||||||||||||||| | ||||||||||||||||||||  || |||||||| ||||| | |||||||||||||||||||||    
T  17445218 gttctaccgtgtggcgacctcgggcggtcgcccgagctcgatcgataatttttgcac--tagactcaacccaaaagcccattaacacatttacaaaaaga 17445121  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||| | ||||||||    
T  17445120 aaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctc 17445041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 60 - 225
Target Start/End: Complemental strand, 31581793 - 31581622
Alignment:
Q  60 gtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttg 159  Q
    ||||||||||| ||||||||||||| || |||| ||||| |||||||| |||| ||||| || ||||| | |||||||||||||||||||||||||||||    
T  31581793 gtatggcgaccacgggcggtcgcccaggctcgagcgatactttttgcatattagactcatcccaaaagcccattaacacatttacaaaaagaaaaatttg 31581694  T
Q  160 ggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||    
T  31581693 ggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 31581622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 18981605 - 18981780
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| |||||||||| ||||| ||||| |||||||||||||||||| |||||||| ||||||| ||||| |||||||||||||||    
T  18981605 gttctaccgtatggcgacc-cgggcggtcgtccgggctcgattgataatttttgcacattagactcaacccaaaagtccattaaaacatttacaaaaaga 18981703  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcat 222  Q
    |||||||||||||| | |||||||||||      ||||||||||||||||||||||||||||| |||||||||||||    
T  18981704 aaaatttgggcaatttaaaaattgtcacacgcaaataggtcttggaattttatttagcacactgttgacgggttcat 18981780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 2285850 - 2286026
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| || ||||||| ||||| |||||   | |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||    
T  2285850 gttctaccggatggcgatctcggacggtcattcaggttcgatcgataatttttgcacattaaatccaaccaaaaagtctattaacacatttacgaaagga 2285949  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcat 222  Q
    |||||||| |||||||||||||||||||      |||||| ||||||||||||||||||||||||||||| ||||||    
T  2285950 aaaatttgagcaatctgaaaattgtcacacgcaaataggttttggaattttatttagcacactattgacgtgttcat 2286026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 44084770 - 44084603
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| ||||| |||||||||| ||||||||||||||||||||||||||| ||| | ||||||  ||||||||| |||||||||||||||||||||||    
T  44084770 ggcgaccccgggcagtcgcccgggctcgatcgataatttttgcacattaaacccaatccaaaagttcattaacacacttacaaaaagaaaaatttgggca 44084671  T
Q  164 atctgaaaattgt------cacataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| |      || ||||||||  ||||||||||||||||||||||||||||||||||||    
T  44084670 atctgaaaattctcatacgcaaataggtctcagaattttatttagcacactattgacgggttcatctc 44084603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 45418583 - 45418750
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| |||||||||||||||| |||||||||||||||||| ||||| |  ||||| ||||| | ||||||||| |||||||||||||||||||||||    
T  45418583 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 45418682  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| ||||      ||||||||  ||||||||||||||||||||||||||||||||||||    
T  45418683 atctgaaaattctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctc 45418750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 771007 - 771165
Alignment:
Q  72 cgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaa 171  Q
    |||||||||||||||| ||||||||||| |||||||||||| || ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||    
T  771007 cgggcggtcgcccgggctcgatcgataacttttgcacattagacccaaccaaaaagcccattaacacacttacaaaaagaaaaatttgggcaatctgaaa 771106  T
Q  172 attgtcac------ataggtcttggaattttatttagcacactattgacgggttcatct 224  Q
    ||| ||||      |||||||| |||| ||||||||||||| |||||||||||||||||    
T  771107 attctcacacgcaaataggtctcggaactttatttagcacattattgacgggttcatct 771165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 16405588 - 16405764
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| | ||||| ||||  ||||||||||||||| || ||||||||||||||||| ||| |||||||| |||||   ||||||||||||| |||||||    
T  16405588 gttctaccatatggtgaccctgggcggtcgcccgggctcaatcgataatttttgcacgttagactcaacccaaaagctcattaacacatttataaaaaga 16405687  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcat 222  Q
    ||||||||| ||||||||||||||||||      ||| |||||||||||||||||||||||||||||||||||||||    
T  16405688 aaaatttggacaatctgaaaattgtcacacgcaaataagtcttggaattttatttagcacactattgacgggttcat 16405764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 224
Target Start/End: Original strand, 8147351 - 8147518
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| |||||||||||||||| |||||||||||| ||||||||||| || ||||  ||||||| ||||||||| |||||||||||||||||||||||    
T  8147351 ggcgaccccgggcggtcgcccgggctcgatcgataatctttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgggca 8147450  T
Q  164 atctg-aaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatct 224  Q
    ||||| |||||| ||||      |||| ||| ||||||||||||| ||||||||||||||||||||||    
T  8147451 atctgaaaaattctcacacgcaaatagatctcggaattttatttaacacactattgacgggttcatct 8147518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 12756986 - 12756837
Alignment:
Q  82 cccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac-- 179  Q
    ||||||||||||||||||||||||| ||||| || ||||| ||||| | ||||||||| ||||||||||||||||||| |||||||||||||| ||||      
T  12756986 cccgggttcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgagcaatctgaaaattctcacac 12756887  T
Q  180 ----ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
        ||| |||| |||||||||||||||||||||||||||||||||||||    
T  12756886 gcaaataagtctcggaattttatttagcacactattgacgggttcatctc 12756837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 52 - 180
Target Start/End: Complemental strand, 2958279 - 2958152
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| |||||||||| ||||| ||||||||||||||| |||||||| |||||||| ||||| | ||||||||||||||||| |||    
T  2958279 gttctaccgtatggcgaccccgggcggtcgtccgggctcgatcgataatttt-gcacattagactcaacccaaaagcccattaacacatttacaaagaga 2958181  T
Q  152 aaaatttgggcaatctgaaaattgtcaca 180  Q
    |||||||||| ||||||||||||||||||    
T  2958180 aaaatttgggtaatctgaaaattgtcaca 2958152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 8059498 - 8059336
Alignment:
Q  66 cgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaat 165  Q
    ||||| ||| || |||||| || || ||||||||||||||||||||| | |||||| ||||| | ||||||||| |||||||||||||||||||| ||||    
T  8059498 cgaccccggccgatcgcccaggctcaatcgataatttttgcacattagagtcaacccaaaagccaattaacacacttacaaaaagaaaaatttggccaat 8059399  T
Q  166 ctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcat 222  Q
     |||||||| ||||      || ||||| ||||||||||||||||||| ||||||||||||||    
T  8059398 ttgaaaattctcacacacaaatcggtctcggaattttatttagcacacaattgacgggttcat 8059336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 225
Target Start/End: Complemental strand, 26162837 - 26162702
Alignment:
Q  93 tcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgt------cacataggtc 186  Q
    |||||||||||| ||||||||| |||||| ||||  | ||||||||| ||||||||||||||||||||||||||| |||||| |      || |||||||    
T  26162837 tcgataatttttacacattaaattcaacccaaaaacccattaacacacttacaaaaagaaaaatttgggcaatctaaaaattctcaaacacaaataggtc 26162738  T
Q  187 ttggaattttatttagcacactattgacgggttcatctc 225  Q
    | |||   |||||||||||| ||||||||||||||||||    
T  26162737 tcgga---ttatttagcacattattgacgggttcatctc 26162702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 26237957 - 26238110
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| |||||||||||||||| |||||||||| |||||||| |||| |  ||| | ||||||| ||||||||| |||||||||||||||||||||||    
T  26237957 ggcgaccccgggcggtcgcccgggctcgatcgata-tttttgcaaattagatgcaaaccaaaagtccattaacacacttacaaaaagaaaaatttgggca 26238055  T
Q  164 a-tctgaaaattgtcacataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    | |||||||| | ||| |         | || |||||||||||||||||||||||||||||||    
T  26238056 aatctgaaaactctcagac--------gtatattatttagcacactattgacgggttcatctc 26238110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 4555377 - 4555260
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggc- 162  Q
    ||||| |||||||||||||  ||  |||||||||||||||||||||| |||| ||||| |||||    |||||||| |||||||||||||| |||||||     
T  4555377 ggcgatctcgggcggtcgct-ggactcgatcgataatttttgcacatcaaacccaacccaaaagctcgttaacacacttacaaaaagaaaattttgggca 4555279  T
Q  163 -aatctgaaaattgtcaca 180  Q
     |||||||||||| |||||    
T  4555278 aaatctgaaaattctcaca 4555260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 7072710 - 7072644
Alignment:
Q  73 gggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacaca 139  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||||| ||||| | |||||||||    
T  7072710 gggcggtcgcccgggctcgatcgataatttttttacattaaactcaacccaaaagcccattaacaca 7072644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 13837809 - 13837985
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| |||||| |||| |||||||||||||||||||||| |||||| |||||||| |||||   || ||||||||||||||||||    
T  13837809 gttctaccgtatggcgaccccgggcgatcgctcgggttcgatcgataatttttgtacattagactcaacccaaaagcacatcaacacatttacaaaaaga 13837908  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcat 222  Q
    ||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  13837909 aaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 13837985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 52 - 222
Target Start/End: Complemental strand, 34948937 - 34948761
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| | ||||||||||| || |||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||    
T  34948937 gttctaccgtatggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaaga 34948838  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcat 222  Q
    ||||||||||||||||||||||||||||      |||| ||||| ||||||||||||||||||||||||||||||||    
T  34948837 aaaatttgggcaatctgaaaattgtcacacacaaatagatcttgaaattttatttagcacactattgacgggttcat 34948761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 28996730 - 28996897
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| |||||||||||||| | |||||||||||||||||| ||||| || ||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  28996730 ggcgaccccgggcggtcgcccgagctcgatcgataatttttgcgcattagacccaacctaaaagtcaattaacacacttacaaaaagaaaaatttgggca 28996829  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| ||||      |||||||| |||||||||||||||||||||||||||||||||||||    
T  28996830 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 28996897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 398618 - 398784
Alignment:
Q  65 gcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaa 164  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||   ||||||||||||| ||||||||||||||||||||    
T  398618 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaa 398717  T
Q  165 tctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    | |||||||||||||      ||||||||||||||||||||| ||||||||||||| | ||||||||    
T  398718 tttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 398784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 18339106 - 18339273
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||| || ||| | ||||| | ||||||||| |||||||||||||| ||||||||    
T  18339106 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggca 18339205  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| ||||      |||||||| |||||||||||||||||||||||||||||||||||||    
T  18339206 atctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 18339273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 72 - 225
Target Start/End: Original strand, 29743291 - 29743450
Alignment:
Q  72 cgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaa 171  Q
    |||||||| ||||||| || ||||||||||||||||||||| || ||||||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  29743291 cgggcggttgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagttcattaacacatttacagaaagaaaaatttgggcaatctgaaa 29743390  T
Q  172 attgt------cacataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||| |      || |||||||| ||||||||||||||||||||| || ||| ||||||||    
T  29743391 attcttacacgcaaataggtctcggaattttatttagcacactagtgccggattcatctc 29743450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 80 - 225
Target Start/End: Complemental strand, 33229487 - 33229336
Alignment:
Q  80 cgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac 179  Q
    |||||||| ||||||||| ||||||| |||||| || ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| | ||    
T  33229487 cgcccgggctcgatcgatcatttttgtacattagacccaacccaaaagtccattaacacatttccaaaaagaaaaatttgggcaatctgaaaattcttac 33229388  T
Q  180 ------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
          ||| |||| || ||||||||||||||||||||| ||| ||||||||    
T  33229387 acgtaaataagtctcgggattttatttagcacactattgccggattcatctc 33229336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 31028531 - 31028435
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgg 160  Q
    ||||||| || ||||| ||||||  |||||||||||||||||||||||| |  ||||| |||||   |||||||||||||||||||| ||| |||||    
T  31028531 ggcgaccccgagcggttgcccggactcgatcgataatttttgcacattagatccaacctaaaagctcattaacacatttacaaaaaggaaattttgg 31028435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 24697969 - 24697899
Alignment:
Q  79 tcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaa 149  Q
    ||||||||| || ||||||||||||| |||||||  | ||||| ||||| | ||||||||| |||||||||    
T  24697969 tcgcccgggctcaatcgataattttttcacattaggcccaacccaaaagcccattaacacacttacaaaaa 24697899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 13647017 - 13647053
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataat 100  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  13647017 ggcgaccccgggcggtcgcccgggctcgatcgataat 13647053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 7433433 - 7433609
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||| ||| |||||||||||||| | |||||| ||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||    
T  7433433 gttctaccgtatggcaaccccgggcggtcgcccgagctcgatctataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaaga 7433532  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcat 222  Q
    ||| |||||||||||| |||||||||||      |||||||||| ||||||||||||||||||||||||||||||||    
T  7433533 aaattttgggcaatctaaaaattgtcacacacaaataggtcttgaaattttatttagcacactattgacgggttcat 7433609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 26144256 - 26144422
Alignment:
Q  65 gcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaa 164  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||   ||||||||||||| ||||||||||||||||||||    
T  26144256 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaa 26144355  T
Q  165 tctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    | |||||||||||||      ||||||||||||||||||||| ||||||||||||| | ||||||||    
T  26144356 tttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 26144422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 32982235 - 32982056
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| ||||||||||| ||||  ||||||||||||||||||||||| || ||||| ||||| | ||||||| |||||||||||||    
T  32982235 gttctaccgtatggcgaccccgggcggtcgcgcgggcccgatcgataatttttgcacattagacccaacctaaaagcccattaacatatttacaaaaaga 32982136  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||| ||||||||||||||||||      |||||||||||||||||||||||||| |||||||| | ||||||||    
T  32982135 aaaatttggacaatctgaaaattgtcacacacaaataggtcttggaattttatttagcactctattgacagattcatctc 32982056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 42311120 - 42310941
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| |||||||||||| | | || ||||||||| |||||||||||||||||||||||| |||||||| ||||| |  ||||||||||||||||||||    
T  42311120 gttctaccgtatggcgaccccagacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccgttaacacatttacaaaaaga 42311021  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||||||||||||||||||||      ||| |||||| |||||||||||| || |||||||||||||||||||    
T  42311020 aaaatttgggcaatctgaaaattgtcacacgcaaataagtcttgaaattttatttagtacgctattgacgggttcatctc 42310941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 76 - 225
Target Start/End: Original strand, 3828996 - 3829150
Alignment:
Q  76 cggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattg 175  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||  ||||||||| ||||||||||||||||||||||||||||||||||     
T  3828996 cggtcgctcgggttcgatcgataatttttgcacattaaacccaacccaaaagttcattaacacacttacaaaaagaaaaatttgggcaatctgaaaattt 3829095  T
Q  176 t------cacataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |      || ||||||| ||||||||||||||||||||||||||||||||||||||    
T  3829096 tcatacgcaaataggtc-tggaattttatttagcacactattgacgggttcatctc 3829150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 17445324 - 17445479
Alignment:
Q  75 gcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaatt 174  Q
    ||||||||||||| | |||| |||||||||| |||||| |  ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  17445324 gcggtcgcccgggctggatcaataatttttgtacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaatt 17445423  T
Q  175 gtcac------ataggtcttggaattttatttagcacactattgacgggttcatct 224  Q
     ||||      |||||||| |||||||||||||||||| |||||||||||||||||    
T  17445424 ctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatct 17445479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 35907552 - 35907719
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||| || ||||| ||||| | ||||  ||| |||||||||||||| |||||| |    
T  35907552 ggcgacctcgggcggtcgcccgggcttgatcgataatttttgcacattagacccaacccaaaagccaattagtacacttacaaaaagaaaattttgggta 35907651  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| ||||      |||||||| |||||||||||||||||| |||||||| |||||||||    
T  35907652 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgagttcatctc 35907719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 71 - 225
Target Start/End: Complemental strand, 321537 - 321377
Alignment:
Q  71 tcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaa 170  Q
    ||||||||||| ||||| |||||||||||||||||  ||||| |  ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  321537 tcgggcggtcgtccgggctcgatcgataatttttgtgcattagatccaacccaaaagtccattaacacagttacaaaaagaaaaatttgggcaatctgaa 321438  T
Q  171 aattgt------cacataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    |||| |      || |||||||| ||||||||||||| |||| ||||||||||||||||||    
T  321437 aattctcatatgcaaataggtctcggaattttatttaacacattattgacgggttcatctc 321377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 23313226 - 23313345
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataattt-ttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaag 150  Q
    |||||| |||||||||| |||||||||| ||||||| ||||| ||| |||| |||||||||| |||||||  ||||||  ||||||||||||||||||||    
T  23313226 gttctaccgtatggcgatctcgggcggttgcccgggctcgattgatgatttgttgcacattagactcaacataaaagttcattaacacatttacaaaaag 23313325  T
Q  151 aaaaatttgggcaatctgaa 170  Q
    ||||||||||||||||||||    
T  23313326 aaaaatttgggcaatctgaa 23313345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 41972440 - 41972346
Alignment:
Q  65 gcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgg 160  Q
    |||||| |||||||||||| || | ||||||||||||||||||||||| |  ||||| ||||| ||||||||||| ||||||||||||||||||||    
T  41972440 gcgaccccgggcggtcgcctggct-cgatcgataatttttgcacattagatccaacctaaaagcctattaacacacttacaaaaagaaaaatttgg 41972346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 33489687 - 33489805
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggc- 162  Q
    ||||||| ||| ||||||  |||| | | ||||||||||||| |||||| |||||| | ||||| | ||||||||| |||| |||||||||||||| ||     
T  33489687 ggcgaccccggacggtcgttcgggattgttcgataatttttgtacattagactcaaactaaaagcccattaacacacttactaaaagaaaaatttgagca 33489786  T
Q  163 -aatctgaaaattgtcaca 180  Q
     |||||||||||| |||||    
T  33489787 aaatctgaaaattctcaca 33489805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 33489839 - 33489873
Alignment:
Q  191 aattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||||||||||||||||||||||||    
T  33489839 aattttatttagcacactattgacgggttcatctc 33489873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 41972290 - 41972256
Alignment:
Q  191 aattttatttagcacactattgacgggttcatctc 225  Q
    |||||||||||||||||||||||||||||||||||    
T  41972290 aattttatttagcacactattgacgggttcatctc 41972256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 31866977 - 31867014
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatt 101  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  31866977 ggcgaccccgggcggtcgcccgggttcgaccgataatt 31867014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 17830 - 18009
Alignment:
Q  52 gttctatcgtatggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaaga 151  Q
    |||||| ||| |||||||| || ||| ||| ||||| |||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||    
T  17830 gttctaccgtgtggcgaccccgagcgatcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaaga 17929  T
Q  152 aaaatttgggcaatctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||||||||||||||||||||      |||||||||| |||||||||||||||||||||||| | ||||||||    
T  17930 aaaatttgggcaatctgaaaattgtcacatgtaaataggtcttgaaattttatttagcacactattgacagtttcatctc 18009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 65 - 225
Target Start/End: Complemental strand, 480623 - 480457
Alignment:
Q  65 gcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaa 164  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||   ||||||||||||| ||||||||||||||||||||    
T  480623 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaa 480524  T
Q  165 tctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    | |||||||||||||      ||||||||||||||||||||| ||||||||||||| | ||||||||    
T  480523 tttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 480457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 72 - 225
Target Start/End: Original strand, 530 - 689
Alignment:
Q  72 cgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaa 171  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||   ||||||||||||| ||||||||||||||||||||| |||||    
T  530 cgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaatttgaaa 629  T
Q  172 attgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||      ||||||||||||||||||||| ||||||||||||| | ||||||||    
T  630 attgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 5230 - 5397
Alignment:
Q  64 ggcgacctcgggcggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggca 163  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||| || ||| | ||||| | ||||||||| |||||||||||||| ||||||||    
T  5230 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggca 5329  T
Q  164 atctgaaaattgtcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||||||||| ||||      |||||||| |||||||||||||||||||||||||||||||||||||    
T  5330 atctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 5397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 52944 - 53092
Alignment:
Q  83 ccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac--- 179  Q
    ||||| |||||||||||||||||||||||| | | |||| ||||| | |||||||||||||||||||||||||||||| ||||||||||||| ||||       
T  52944 ccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctcacatg 53043  T
Q  180 ---ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
       |||||||| |||||||||||||||||||||||||||||||||||||    
T  53044 caaataggtctcggaattttatttagcacactattgacgggttcatctc 53092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 76 - 225
Target Start/End: Original strand, 31492 - 31647
Alignment:
Q  76 cggtcgcccgggttcgatcgataatttttgcacattaaactcaaccaaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattg 175  Q
    |||||||||||| ||||||||||||||||||||| || || ||||| ||||| | ||||||||| |||||||||||||||||||| |||||||||||||     
T  31492 cggtcgcccgggctcgatcgataatttttgcacactagacccaacccaaaagcccattaacacacttacaaaaagaaaaatttggacaatctgaaaattc 31591  T
Q  176 tcac------ataggtcttggaattttatttagcacactattgacgggttcatctc 225  Q
    ||||      |||||||| | |||||||||| ||||||||||||| ||||||||||    
T  31592 tcactcgcaaataggtctagtaattttattttgcacactattgacaggttcatctc 31647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University