View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2833_high_1_N (Length: 360)
Name: NF2833_high_1_N
Description: NF2833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2833_high_1_N |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 47540373 - 47540717
Alignment:
| Q |
1 |
gctaccatcgttgaattgcaagatcctaacagagcatctacagttgaaactcataatcaatagaagtatgtacattgcaagttcacaacaataatgtcca |
100 |
Q |
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| T |
47540373 |
gctaccaccgttgaattgcaagatcctaacagagcatctacagttgaaactcataatcaatagaagtatgtacattgcaagttcacaacaataatgtcca |
47540472 |
T |
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| Q |
101 |
gannnnnnnataattgacagtacatgtggcccccaagtatagtgtaccaacgacatattaattacatatgataatattatatatcttcactttagccttg |
200 |
Q |
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| T |
47540473 |
gatttttttataattgacagtacatgtggcccccaagtatagtgtaccaacgacatattaattacatatgataatattatatatcttcactttagccttg |
47540572 |
T |
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| Q |
201 |
tttatgattgacccagaaaccttgttttcacagagctatggttgacaattttacatgtaggtttcctannnnnnnnnaactttaactgatcttcaacaac |
300 |
Q |
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| T |
47540573 |
tttatcattgacccagaaacctggttttcacagagctatggttgacaattttacatgtaggtttccta--tttttttaactttaactgatcttcaacaac |
47540670 |
T |
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| Q |
301 |
tcacaatttccagtttacaaaatccccgtgcaaatcttattggttct |
347 |
Q |
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| T |
47540671 |
tcacaatttccagtttacaaaatccccgtgcaaatcttattggttct |
47540717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 47539183 - 47539236
Alignment:
| Q |
282 |
ttaactgatcttcaacaac--tcacaatttccagtttacaaaatccccgtgcaa |
333 |
Q |
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| T |
47539183 |
ttaactgatcttcaaccacgctcacaatttccagtttacaaaatccccgtgcaa |
47539236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 47546834 - 47546907
Alignment:
| Q |
110 |
ataattgacagtacatgtggcccccaagtatagtgtaccaacgacatattaattacatatgataatattatata |
183 |
Q |
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| T |
47546834 |
ataatggacagtacatgtggccccaaagtatggtgtaccaaaaacatattaattgtatatgataagcttatata |
47546907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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