View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2833_high_2 (Length: 340)

Name: NF2833_high_2
Description: NF2833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2833_high_2
NF2833_high_2
[»] chr2 (18 HSPs)
chr2 (11-333)||(9297426-9297748)
chr2 (206-340)||(9286290-9286424)
chr2 (24-162)||(9286128-9286266)
chr2 (87-211)||(9062252-9062373)
chr2 (83-212)||(9290945-9291072)
chr2 (91-205)||(9315061-9315175)
chr2 (106-199)||(7117095-7117187)
chr2 (87-162)||(9285281-9285356)
chr2 (83-149)||(9076759-9076822)
chr2 (83-149)||(9069162-9069225)
chr2 (20-70)||(9326343-9326393)
chr2 (19-70)||(9285383-9285434)
chr2 (20-70)||(9318487-9318537)
chr2 (172-211)||(9318619-9318658)
chr2 (83-125)||(8574530-8574571)
chr2 (89-131)||(9318566-9318608)
chr2 (186-219)||(9286262-9286295)
chr2 (166-199)||(10334763-10334796)
[»] scaffold0667 (2 HSPs)
scaffold0667 (86-154)||(1565-1634)
scaffold0667 (172-211)||(1638-1677)
[»] chr3 (2 HSPs)
chr3 (20-70)||(37461273-37461323)
chr3 (87-123)||(37461427-37461463)


Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 333
Target Start/End: Original strand, 9297426 - 9297748
Alignment:
Q  11 acagaccgcagagagtttcaattacaaatatcataaaggaaaatatggactattacatatccatattttctcaaagataaaagcagaagatccttttaga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9297426 acagaccgcagagagtttcaattacaaatatcataaaggaaaatatggactattacatatccatattttctcaaagataaaagcagaagatccttttaga 9297525  T
Q  111 aaggccagagggagagaggattcctcatcaaattcttcacaccctaatgtgagatttttacacaagagggataactgtgatctcagacatacaattcaaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9297526 aaggccagagggagagaggattcctcatcaaattcttcacactctaatgtgagatttttacacaagagggataactgtgatctcagacatacaattcaaa 9297625  T
Q  211 aactcaaactatatttttaggtaattatcggctaatccatacccaatcggaaacatatacataaaattgaaactaagaattacctattgaggttctttca 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9297626 aactcaaactatatttttaggtaattatcggctaatccatacccaatctgaaacatatacataaaattgaaactaagaattacctattgaggttctttca 9297725  T
Q  311 aattgatttaagcagagatgttt 333  Q
    |||||||||||||||||||||||    
T  9297726 aattgatttaagcagagatgttt 9297748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 206 - 340
Target Start/End: Original strand, 9286290 - 9286424
Alignment:
Q  206 tcaaaaactcaaactatatttttaggtaattatcggctaatccatacccaatcggaaacatatacataaaattgaaactaagaattacctattgaggttc 305  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||| ||||||    
T  9286290 tcaaacactcaaactatatttctaggtaattatcggctaatccatacccaatctgaaacatatacataaatttcaaactaagaattacctattaaggttc 9286389  T
Q  306 tttcaaattgatttaagcagagatgtttcattgtg 340  Q
    |||||||||||||| |||||||||||||| |||||    
T  9286390 tttcaaattgatttcagcagagatgtttcgttgtg 9286424  T

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Target: chr2; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 9286128 - 9286266
Alignment:
Q  24 agtttcaattacaaatatcataaaggaaaatatggactattacatatccatattttctcaaagataaaagcagaagatccttttagaaaggccagaggga 123  Q
    ||||||| ||||||||||||||| | ||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9286128 agtttcagttacaaatatcataaggcaaaatatggactattccagatccatattttctcaaagattaaagcagaagatccttttagaaaggccagaggga 9286227  T
Q  124 gagaggattcctcatcaaattcttcacaccctaatgtga 162  Q
    |||||||||| |||||||| |||| | ||||||||||||    
T  9286228 gagaggattcatcatcaaactctttataccctaatgtga 9286266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 87 - 211
Target Start/End: Complemental strand, 9062373 - 9062252
Alignment:
Q  87 ataaaagcagaagatccttttagaaaggccagagggagagaggattcctcatcaaattcttcacaccctaatgtgagatttttacacaagagggataact 186  Q
    ||||||||| | |||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||   |||||| |    
T  9062373 ataaaagcaaatgatccttttagataggccagagggagagaggattcatcatcaaattcttcacaccttaatgtgagatttttacacaa---ggataagt 9062277  T
Q  187 gtgatctcagacatacaattcaaaa 211  Q
    |||||||||||| ||||| ||||||    
T  9062276 gtgatctcagacttacaactcaaaa 9062252  T

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Target: chr2; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 9290945 - 9291072
Alignment:
Q  83 aaagataaaagcagaagatccttttagaaaggccagagggagagaggattcctcatcaaattcttcacaccctaatgtgagatttttacacaagagggat 182  Q
    ||||| |||||||||||   |||||||| ||| |||||||||||||| ||| |||||||||||| || |||||||||| |||||||||||||||||||||    
T  9290945 aaagacaaaagcagaagt--cttttagataggtcagagggagagagggttcatcatcaaattctacataccctaatgtcagatttttacacaagagggat 9291042  T
Q  183 aactgtgatctcagacatacaattcaaaaa 212  Q
    || |||||||||||||||||||||||||||    
T  9291043 aagtgtgatctcagacatacaattcaaaaa 9291072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 91 - 205
Target Start/End: Original strand, 9315061 - 9315175
Alignment:
Q  91 aagcagaagatccttttagaaaggccagagggagagaggattcctcatcaaattcttcacaccctaatgtgagatttttacacaagagggataactgtga 190  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||  | |||||||||| | ||||||||| ||||||||||| |||||    
T  9315061 aagcagcagatccttttagaaaggccagagggagagaggattcatcatcaaattctaaataccctaatgtcatatttttacaaaagagggataagtgtga 9315160  T
Q  191 tctcagacatacaat 205  Q
    |||||||||||||||    
T  9315161 tctcagacatacaat 9315175  T

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Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 7117187 - 7117095
Alignment:
Q  106 ttagaaaggccagagggagagaggattcctcatcaaattcttcacaccctaatgtgagatttttacacaagagggataactgtgatctcagaca 199  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | | ||||||| ||||||||| ||||    
T  7117187 ttagagaggccagagggagagaggattcatcatcaaattcttcacatcctaatgtgagatttttaca-aggtgggataaatgtgatctcggaca 7117095  T

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Target: chr2; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 9285356 - 9285281
Alignment:
Q  87 ataaaagcagaagatccttttagaaaggccagagggagagaggattcctcatcaaattcttcacaccctaatgtga 162  Q
    ||||||||| |  |||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||    
T  9285356 ataaaagcaaataatccttttagaaaggccagagggagagaggattcataatcaaattcttcacacactaatgtga 9285281  T

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Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 9076822 - 9076759
Alignment:
Q  83 aaagataaaagcagaagatccttttagaaaggccagagggagagaggattcctcatcaaattcttca 149  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  9076822 aaagataaaggcagaagatccttttagaaaggccagagggagagaggat---tcatcaaattcttca 9076759  T

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Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 9069225 - 9069162
Alignment:
Q  83 aaagataaaagcagaagatccttttagaaaggccagagggagagaggattcctcatcaaattcttca 149  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||   |||||||||||||||    
T  9069225 aaagacaaaagcagaagatccatttagaaaggccagagggagagaggat---tcatcaaattcttca 9069162  T

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Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 9326343 - 9326393
Alignment:
Q  20 agagagtttcaattacaaatatcataaaggaaaatatggactattacatat 70  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  9326343 agagagtttcaattacaaatatcataaaggcaaatatggactattccatat 9326393  T

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Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 9285434 - 9285383
Alignment:
Q  19 cagagagtttcaattacaaatatcataaaggaaaatatggactattacatat 70  Q
    |||||||||||||||||||||||||||| || |||||||||||||| |||||    
T  9285434 cagagagtttcaattacaaatatcataaggggaaatatggactattccatat 9285383  T

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Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 9318487 - 9318537
Alignment:
Q  20 agagagtttcaattacaaatatcataaaggaaaatatggactattacatat 70  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| |||||    
T  9318487 agagagtttcaattacaaatataataaagggaaatatggactattccatat 9318537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 9318619 - 9318658
Alignment:
Q  172 acaagagggataactgtgatctcagacatacaattcaaaa 211  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  9318619 acaagagggataaatgtgatctcagacatacaattcaaaa 9318658  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 8574571 - 8574530
Alignment:
Q  83 aaagataaaagcagaagatccttttagaaaggccagagggaga 125  Q
    ||||| |||||||||||||||||| ||||||||||||||||||    
T  8574571 aaagacaaaagcagaagatccttt-agaaaggccagagggaga 8574530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 9318566 - 9318608
Alignment:
Q  89 aaaagcagaagatccttttagaaaggccagagggagagaggat 131  Q
    ||||||||| |||||||| ||||||| ||||||||||||||||    
T  9318566 aaaagcagacgatcctttaagaaaggtcagagggagagaggat 9318608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 9286262 - 9286295
Alignment:
Q  186 tgtgatctcagacatacaattcaaaaactcaaac 219  Q
    |||||||||||| |||||||||||||||||||||    
T  9286262 tgtgatctcagagatacaattcaaaaactcaaac 9286295  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 10334763 - 10334796
Alignment:
Q  166 ttttacacaagagggataactgtgatctcagaca 199  Q
    |||||||||||||||||||||||||||| |||||    
T  10334763 ttttacacaagagggataactgtgatcttagaca 10334796  T

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Target: scaffold0667 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 1565 - 1634
Alignment:
Q  86 gataaaagcagaagatccttttagaaa-ggccagagggagagaggattcctcatcaaattcttcacaccc 154  Q
    |||||||||||| ||||||||| |||| |||||||| |||||||||||| ||||||||||||||||||||    
T  1565 gataaaagcagacgatccttttcgaaaaggccagagagagagaggattcatcatcaaattcttcacaccc 1634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 1638 - 1677
Alignment:
Q  172 acaagagggataactgtgatctcagacatacaattcaaaa 211  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  1638 acaagagggataagtgtgatctcagacatactattcaaaa 1677  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 37461273 - 37461323
Alignment:
Q  20 agagagtttcaattacaaatatcataaaggaaaatatggactattacatat 70  Q
    |||||||||||||||||||||||||||||| || ||||||||||| |||||    
T  37461273 agagagtttcaattacaaatatcataaagggaactatggactattccatat 37461323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 37461427 - 37461463
Alignment:
Q  87 ataaaagcagaagatccttttagaaaggccagaggga 123  Q
    ||||||||||||||||| |||||||||||||||||||    
T  37461427 ataaaagcagaagatccgtttagaaaggccagaggga 37461463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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