View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2833_low_1 (Length: 443)
Name: NF2833_low_1
Description: NF2833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2833_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 12 - 418
Target Start/End: Complemental strand, 16970489 - 16970083
Alignment:
| Q |
12 |
atgaatggttagctctcatcttaataagagatatcagcacaagaatttccctcttgaagaatatgatttataaaaatagaacaatcattagcaagataca |
111 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16970489 |
atgaatggttagctctcatcttagtaagagatatcagcacaagaatttccctcttgaagaatatgatttataaaaatagaacaatcattagcaagataca |
16970390 |
T |
|
| Q |
112 |
cacgaatgaattataggagatttgcataacgatggagccttgttgaagtctcattcattactaactgcacaacatgaagagagtcagagtaacatatgag |
211 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
16970389 |
cacgaatgagttataggagatttgcataacggtggagccttgttgtagtctcattcattactaactgcactacatgaagagagtcagagtaacatatgag |
16970290 |
T |
|
| Q |
212 |
gtttctatatcatgcatcccaacaaaattttataacggtcaatagagcttgaatttcagcatgtaggatatttgagaaccctacactaccaaagaaacca |
311 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
16970289 |
gtttctatatcatgcatcccaacaaaaatttatactggtcaatagagcttgaatttcagcatgtaggatatttgagatccctacactaccaaagaaacca |
16970190 |
T |
|
| Q |
312 |
agttgaaaattttcattgtatttagaaattagaccaccataacctacctttcttgaatttgtcaacgcgcttctatcaacattgaaaactatgatgtcct |
411 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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|
| T |
16970189 |
agttgaaaattttcatcatgtttaaaaattagaccaccataacctacctttcttgaatttgtcaacgcgcttctatcaacattgagaaccatgatgtcct |
16970090 |
T |
|
| Q |
412 |
catccct |
418 |
Q |
| |
|
||||||| |
|
|
| T |
16970089 |
catccct |
16970083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 313
Target Start/End: Original strand, 16639591 - 16639646
Alignment:
| Q |
258 |
gcttgaatttcagcatgtaggatatttgagaaccctacactaccaaagaaaccaag |
313 |
Q |
| |
|
|||||||| ||| ||||||||||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
16639591 |
gcttgaatctcaccatgtaggatattcgagatccccacactaccaaagaaaccaag |
16639646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 13 - 415
Target Start/End: Original strand, 38159391 - 38159791
Alignment:
| Q |
13 |
tgaatggttagctctcatcttaataagagatatcagcacaagaatttccctcttgaagaatatgatttataaaaatagaacaatcattagcaagatacac |
112 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||| || |||||||||| ||||| | ||| ||||||| || ||||||| ||||| |||||||||| ||| |
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|
| T |
38159391 |
tgaacggttagctctcatcttagcaaga-ataacaacacaagaattcccctccttaaggatatgataaattgaaatagaccaatccttagcaagatgcac |
38159489 |
T |
|
| Q |
113 |
acgaatgaattataggagatttgcataacgatggagccttgttgaagtctcattcattactaactgcacaacatgaagagagtcagagtaacatatgagg |
212 |
Q |
| |
|
||||||| || || ||||||||||||| | |||| |||||| |||||| ||||||| ||||||| || ||||||||||| |||| |||||||| |
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|
| T |
38159490 |
ccgaatgagttctaagagatttgcataatggtggaaccttgt---agtctccttcattatcaactgcattacgtgaagagagtcgaagtagcatatgagc |
38159586 |
T |
|
| Q |
213 |
tttctatatcatgcatcccaacaaaattttataacggtcaatagagcttgaatttcagcatgtaggatatttgagaaccctacactaccaaagaaaccaa |
312 |
Q |
| |
|
||| |||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||| ||||||||||| |||| |||||||||| ||| ||| |
|
|
| T |
38159587 |
tttttatatcctgcatcccaacacaattttataccagtcaatagagcttgaatttcagcatgtatgatatttgagatccctgcactaccaaataaatcaa |
38159686 |
T |
|
| Q |
313 |
gttgaaaattttcattgtatttagaaattagaccaccataacctacctttc--ttgaatttgtcaacgcgcttctatcaacattgaaaactatgatgtcc |
410 |
Q |
| |
|
||||||| || ||| || ||| ||||||||||||||||||| |||||| ||| ||||||||||||||||| ||||||||||| || ||| ||||| |
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|
| T |
38159687 |
cttgaaaacttccatcgtgcttacgaattagaccaccataacctgcctttctattgtatttgtcaacgcgcttccatcaacattgagaatcatggtgtcc |
38159786 |
T |
|
| Q |
411 |
tcatc |
415 |
Q |
| |
|
||||| |
|
|
| T |
38159787 |
tcatc |
38159791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 46 - 417
Target Start/End: Original strand, 47396883 - 47397251
Alignment:
| Q |
46 |
cagcacaagaatttccctcttgaagaatatgatttataaaaatagaacaatcattagcaagatacacacgaatgaattataggagatttgcataacgatg |
145 |
Q |
| |
|
|||||| | ||||||||||| ||| ||||||| || ||||||| || || ||||||||||||| ||||||| || || || |||||||||| | || |
|
|
| T |
47396883 |
cagcacgaaaatttccctctcgaatgatatgatgaattgaaatagaccagtccttagcaagatacattcgaatgagttctaagatatttgcataatggtg |
47396982 |
T |
|
| Q |
146 |
gagccttgttgaagtctcattcattactaactgcacaacatgaagagagtcagagtaacatatgaggtttctatatcatgcatcccaacaaaattttata |
245 |
Q |
| |
|
|| | | || |||||| ||||||| || || || ||||||||||||| |||||||||||||| |||||||||| |||||||||||| || |||| |
|
|
| T |
47396983 |
gaacttggt---agtctccttcattatcaattgtactgcatgaagagagtcggagtaacatatgagctttctatatcctgcatcccaacacaactttacg |
47397079 |
T |
|
| Q |
246 |
acggtcaatagagcttgaatttcagcatgtaggatatttgagaaccctacactaccaaagaaaccaagttgaaaattttcattgtatttagaaattagac |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| || ||| |||||||| |
|
|
| T |
47397080 |
ctagtcaatagagcttgaatttcagcatgtaggatatttgagatacctacactaccaaagaaaccaagctgaaaactttcatcgtgcttacgaattagac |
47397179 |
T |
|
| Q |
346 |
caccataacctacctttcttgaatttgtcaacgcgcttctatcaacattgaaaactatgatgtcctcatccc |
417 |
Q |
| |
|
||||||||| | |||||| || ||||||||||||||||| ||||||||||| || ||| ||||||||||| |
|
|
| T |
47397180 |
caccataacatgcctttcctggatttgtcaacgcgcttccatcaacattgagaatcatggcgtcctcatccc |
47397251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 183 - 417
Target Start/End: Original strand, 3241068 - 3241303
Alignment:
| Q |
183 |
acatgaagagagtcagagtaacatatgaggtttctatatcatgcatcccaacaaaattttataacggtcaatagagcttgaatttcagcatgtaggatat |
282 |
Q |
| |
|
||||||||||| || ||||| |||||||| |||||||||| ||| | || | || |||| | | | |||||||||||||||||| ||||||||| || |
|
|
| T |
3241068 |
acatgaagagaatcggagtagcatatgagctttctatatcccgcaatctaaaacaactttacaccagctaatagagcttgaatttcaacatgtaggaaat |
3241167 |
T |
|
| Q |
283 |
ttgagaaccctacac--taccaaagaaaccaagttgaaaattttcattgtatttagaaattagaccaccataacctacctttcttgaatttgtcaacgcg |
380 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||| || ||| || ||| ||||||||||| |||||| | ||||||||| | |||||||||| |
|
|
| T |
3241168 |
ttgagattcctacacgctaccaaagaaaccaagttgaaaacttccatcgtgcttacaaattagaccatcataacttgcctttcttgga-ttgtcaacgca |
3241266 |
T |
|
| Q |
381 |
cttctatcaacattgaaaactatgatgtcctcatccc |
417 |
Q |
| |
|
|||| ||||| ||||| || ||||| |||||||||| |
|
|
| T |
3241267 |
cttccatcaatattgagaatcatgatatcctcatccc |
3241303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 36753383 - 36753329
Alignment:
| Q |
259 |
cttgaatttcagcatgtaggatatttgagaaccctacactaccaaagaaaccaag |
313 |
Q |
| |
|
||||||| ||| ||||||||||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
36753383 |
cttgaatctcaacatgtaggatattcgagatccccacactaccaaagaaaccaag |
36753329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 272 - 417
Target Start/End: Complemental strand, 24702661 - 24702520
Alignment:
| Q |
272 |
atgtaggatatttgagaaccctacactaccaaagaaaccaagttgaaaattttcattgtatttagaaattagaccaccataacctacctttcttgaattt |
371 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| || || | ||||||| ||||||| |||||| || |||| |
|
|
| T |
24702661 |
atgtaggatatttgagatccctacactaccaaagaaaccaagttgaaaacttccatcgtgctt----acgagaccacaataacctgcctttcctggattt |
24702566 |
T |
|
| Q |
372 |
gtcaacgcgcttctatcaacattgaaaactatgatgtcctcatccc |
417 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||| ||||||| |||| |
|
|
| T |
24702565 |
gtcaacgcgcttccatcaacattgagaaccatggtgtcctcgtccc |
24702520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 417
Target Start/End: Original strand, 8962793 - 8962852
Alignment:
| Q |
358 |
cctttcttgaatttgtcaacgcgcttctatcaacattgaaaactatgatgtcctcatccc |
417 |
Q |
| |
|
||||||||||||| |||| || |||| |||||||||||||| |||||||||||| |||| |
|
|
| T |
8962793 |
cctttcttgaattgttcaaagcacttccatcaacattgaaaattatgatgtcctcgtccc |
8962852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 355
Target Start/End: Original strand, 36353857 - 36353945
Alignment:
| Q |
267 |
tcagcatgtaggatatttgagaaccctacactaccaaagaaaccaagttgaaaattttcattgtatttagaaattagaccaccataacc |
355 |
Q |
| |
|
|||||||| |||||||| |||| ||| || |||||||||||| ||| ||||||| | |||| || ||| |||||||||||||||||| |
|
|
| T |
36353857 |
tcagcatgaaggatattagagatccccactctaccaaagaaatcaaattgaaaactgtcatagtgcttacgaattagaccaccataacc |
36353945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 358
Target Start/End: Original strand, 535737 - 535836
Alignment:
| Q |
260 |
ttgaatttcagcatgtaggatatttgagaaccc-tacactaccaaagaaaccaagttgaaaattttcattgtatttagaaattagaccaccataacctac |
358 |
Q |
| |
|
|||||||||| |||||| |||||||||| || ||||||| ||||||||||||||| |||| || ||| | ||| ||||||||||||||||||||| |
|
|
| T |
535737 |
ttgaatttcaacatgtatcatatttgagatcctatacactaacaaagaaaccaagttaaaaacttccatgatgcttacgaattagaccaccataacctac |
535836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 313
Target Start/End: Original strand, 9811999 - 9812040
Alignment:
| Q |
272 |
atgtaggatatttgagaaccctacactaccaaagaaaccaag |
313 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
9811999 |
atgtaggatatttgagatccccacacaaccaaagaaaccaag |
9812040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 311
Target Start/End: Complemental strand, 41171261 - 41171115
Alignment:
| Q |
165 |
ttcattactaactgcacaacatgaagagagtcagagtaacatatgaggtttctatatcatgcatcccaacaaaattttataacggtcaatagagcttgaa |
264 |
Q |
| |
|
||||| || ||||| || |||||||||||||| ||| |||| || || |||||||| | || | |||||| || |||||| | ||||| | ||||||| |
|
|
| T |
41171261 |
ttcatcaccaactgtaccacatgaagagagtcggagaaacacataagctttctataacctgttttccaacataactttataccagtcaaaaacgcttgaa |
41171162 |
T |
|
| Q |
265 |
tttcagcatgtaggatatttgagaaccctacactaccaaagaaacca |
311 |
Q |
| |
|
| |||||||||| ||||| ||| ||| | |||||||||||||||| |
|
|
| T |
41171161 |
tctcagcatgtaaaatattcaagatccccatactaccaaagaaacca |
41171115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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