View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2834_high_1 (Length: 597)
Name: NF2834_high_1
Description: NF2834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2834_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 20 - 582
Target Start/End: Original strand, 49918743 - 49919312
Alignment:
| Q |
20 |
atacacatattcattgaatgtgcacatatacccctaagggtatcaaatcaatcatttcaaagaaagggtaacacccatactttaggccaataaaa-aagg |
118 |
Q |
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| T |
49918743 |
atacacatattcattgaatgtgcacatatacccctaagggtatcaaatcaatcatttcaaagaaagggtaacgcccatactttaggccaataaaaaaagg |
49918842 |
T |
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| Q |
119 |
acgtggattgtgaggttggcaatgtgcagtctcatgtataaaaaggaatgaaactgtgatttttgtttgcgccaatcaactgaaccaatcatagccaaca |
218 |
Q |
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| T |
49918843 |
acgtggattgtgaggttggcaatgtgcagtctcatgtataaaaaggaatgaaactgtgatttttgtttgcgccaatcaactgaaccaatcatagccaaca |
49918942 |
T |
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| Q |
219 |
aaacatagtagctagctaagtctaagctgctttgtttgttgagttgtgatgggcgtttcctctgatctcttggcgttggcctccctac------acggtg |
312 |
Q |
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| T |
49918943 |
aaacatagtagctagctaagtctaagctgctttgtttgttgagttgtgatgggcgtttcctctgatctcttggctttggcctccctacacggtgacggtg |
49919042 |
T |
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| Q |
313 |
atgttgatggttacatctccatatgcggctacggttctctcctctccggnnnnnnnnnnnnnnnnnnnnnnnnnttcctataaagaattattcaatcatc |
412 |
Q |
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| T |
49919043 |
acgttgatggttacatctccatatgcggctacggttctctcctctccggtaactaactaactaattaactaactttcctataaagaattattcaatcatc |
49919142 |
T |
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| Q |
413 |
actctcttaaactaactctaaccctttgacagagaaaagtgctagaagcacgtttcctcacctaattaacttccgaaccgccaggttaactggttttcgc |
512 |
Q |
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| T |
49919143 |
actctcttaaactaactctaaccctttgacagagaaaagtgctagaagcacgtttcctcacctaattaacttccgaaccgccaggttaactggttttcgc |
49919242 |
T |
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| Q |
513 |
cgtctcttctcggttgtaggagccttcttttttaatcatggcatagccaacctcaaaactcaggtgatgt |
582 |
Q |
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| T |
49919243 |
cgtctcttctcggttgtaggagccttcttttttaatcatggcatagccaacctcaaaactcaggtgatgt |
49919312 |
T |
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