View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2834_low_2 (Length: 477)

Name: NF2834_low_2
Description: NF2834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2834_low_2
NF2834_low_2
[»] chr3 (4 HSPs)
chr3 (1-477)||(5332692-5333168)
chr3 (1-477)||(29518901-29519364)
chr3 (330-477)||(38274806-38274953)
chr3 (113-234)||(38275120-38275240)
[»] chr8 (5 HSPs)
chr8 (85-337)||(21117766-21118018)
chr8 (85-337)||(10626915-10627167)
chr8 (221-322)||(19512662-19512763)
chr8 (179-322)||(35338407-35338550)
chr8 (85-159)||(35338313-35338387)
[»] chr4 (3 HSPs)
chr4 (85-333)||(1240724-1240972)
chr4 (221-322)||(18367874-18367975)
chr4 (221-322)||(36594948-36595049)
[»] chr5 (1 HSPs)
chr5 (356-459)||(35487253-35487356)
[»] chr1 (2 HSPs)
chr1 (179-322)||(42600440-42600583)
chr1 (85-134)||(42600628-42600677)


Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 5332692 - 5333168
Alignment:
Q  1 atttatgcattttgagatctctgcagctgtgaattttatgatttctgcattttgagatttttgtggctatgtaacgttcacgttaggaaatatgccaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5332692 atttatgcattttgagatctctgcagctgtgaattttatgatttctgcattttgagatttttgtggctatgtaacgttcacgttaggaaatatgccaaat 5332791  T
Q  101 ggtgtgtttcataatagaacatggtcctcaatgatgtataagttgagttccataactaaacgaccgtttctagctctccaactaaaggcaaagatgcata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5332792 ggtgtgtttcataatagaacatggtcctcaatgatgtataagttgagttccataactaaacgaccgtttcaagctctccaactaaaggcaaagatgcata 5332891  T
Q  201 ggttgcgtgccatgtattgtgagttctattcactgttgcagaacaccggatttggctggaatgctgaaacaaacactgttactgcaagtgaagaagtttg 300  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5332892 ggttgcgcgccatgtattgtgagttctattcactgttgcagaactccggatttggctggaatgctgaaacaaacactgttactgcaagtgaagaagtctg 5332991  T
Q  301 gaaaaattatctgaaggtatggcttaattgaattttagatacactcgattcagattattacttatgagattgattcaattaagaaattgagttttcggtt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5332992 gaaaaattatctgaaggtatggcttaattgaattttagatacactcgattcagattattacttatgagattgattcaattgagaaattgagttttcggtt 5333091  T
Q  401 caggtgttaatttatttgaaccgtatcatgctaggtttctgtttgtaccttataataattctttcacgctcaatata 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  5333092 caggtgttaatttatttgaaccgtatcatgctaggtttctgtttgtaccttataataattttttcacactcaatata 5333168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 29519364 - 29518901
Alignment:
Q  1 atttatgcattttgagatctctgcagctgtgaattttatgatttctgcattttgagatttttgtggctatgtaacgttcacgttaggaaatatgccaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29519364 atttatgcattttgagatctctgcagctgtgaattttatgatttctgcattttgagatttttgtggctatgtaacgttcacgttaggaaatatgccaaat 29519265  T
Q  101 ggtgtgtttcataatagaacatggtcctcaatgatgtataagttgagttccataactaaacgaccgtttctagctctccaactaaaggcaaagatgcata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  29519264 ggtgtgtttcataatagaacatggtcctcaatgatgtataagttgagttccataactaaacagccgtttcaagctctccaactaaaggcaaagatgcata 29519165  T
Q  201 ggttgcgtgccatgtattgtgagttctattcactgttgcagaacaccggatttggctggaatgctgaaacaaacactgttactgcaagtgaagaagtttg 300  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29519164 ggttgcgtgccatgtatcgtgagttctattcactgttgcagaacatcggatttggctggaatgctgaaacaaacactgttactgcaagtgaagaagtctg 29519065  T
Q  301 gaaaaattatctgaaggtatggcttaattgaattttagatacactcgattcagattattacttatgagattgattcaattaagaaattgagttttcggtt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29519064 gaaaaattatctgaaggtatggcttaattgaattttagatacactcgattcagattattacttatgagattgattcaattgagaaattgagttttcggtt 29518965  T
Q  401 caggtgttaatttatttgaaccgtatcatgctaggtttctgtttgtaccttataataattctttcacgctcaatata 477  Q
    ||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||    
T  29518964 caggtgttaatttatttgaacc-------------tttctgtttgtaccttataataattctttcacgctcaatata 29518901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 330 - 477
Target Start/End: Complemental strand, 38274953 - 38274806
Alignment:
Q  330 gaattttagatacactcgattcagattattacttatgagattgattcaattaagaaattgagttttcggttcaggtgttaatttatttgaaccgtatcat 429  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |    
T  38274953 gaatattagatacactcgattcggattattacttatgagattgattcaattgagaaattgagttttcggttcaggtgttaatttgtttgaaccgtatctt 38274854  T
Q  430 gctaggtttctgtttgtaccttataataattctttcacgctcaatata 477  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38274853 gctaggtttctgtttgtaccttataataattctttcatgctcaatata 38274806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 38275240 - 38275120
Alignment:
Q  113 aatagaacatggtcctcaatgatgtataagttgagttccataactaaacgaccgtttctagctctccaactaaaggcaaagatgcataggttgcgtgcca 212  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||  ||||    
T  38275240 aatagaacatggtcctca-tgatgtataaattgagttccataactaaacgaccgtttcaagctcttcaactaaaggcaaagatgcataggttgcaagcca 38275142  T
Q  213 tgtattgtgagttctattcact 234  Q
    ||||| ||||||||||||||||    
T  38275141 tgtatcgtgagttctattcact 38275120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 5e-88; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 85 - 337
Target Start/End: Complemental strand, 21118018 - 21117766
Alignment:
Q  85 aggaaatatgccaaatggtgtgtttcataatagaacatggtcctcaatgatgtataagttgagttccataactaaacgaccgtttctagctctccaacta 184  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| | |||||||| |||||| || || ||||    |||||    
T  21118018 aggaaatatgccaaatggtgtgtttcatactagaatatggtcctcaatgacgtataagttgaataccataactgaacgactgtatcaagctgataaacta 21117919  T
Q  185 aaggcaaagatgcataggttgcgtgccatgtattgtgagttctattcactgttgcagaacaccggatttggctggaatgctgaaacaaacactgttactg 284  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||    
T  21117918 aaggcaaagatgcataggttgcgagccatgtatcgtgagttctattcactgaagcagaacacaggatttggctggaatgctgaaacaaacactgttactg 21117819  T
Q  285 caagtgaagaagtttggaaaaattatctgaaggtatggcttaattgaatttta 337  Q
    ||| ||||||||| ||||||||||||||||||||| | |||||||||||||||    
T  21117818 caactgaagaagtctggaaaaattatctgaaggtacgacttaattgaatttta 21117766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 85 - 337
Target Start/End: Complemental strand, 10627167 - 10626915
Alignment:
Q  85 aggaaatatgccaaatggtgtgtttcataatagaacatggtcctcaatgatgtataagttgagttccataactaaacgaccgtttctagctctccaacta 184  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||  |||||||||| | |||||||| |||||| || || ||||    |||||    
T  10627167 aggaaatatgccaaatggtgtgtttcatactagaatatggtcctcaatgacttataagttgaataccataactgaacgactgtatcaagctgataaacta 10627068  T
Q  185 aaggcaaagatgcataggttgcgtgccatgtattgtgagttctattcactgttgcagaacaccggatttggctggaatgctgaaacaaacactgttactg 284  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||    
T  10627067 aaggcaaagatgcataggttgcgagccatgtatcgtgatttctattcactgaagcagaacacaggatttggctggaatgctgaaacaaacactgttactg 10626968  T
Q  285 caagtgaagaagtttggaaaaattatctgaaggtatggcttaattgaatttta 337  Q
    ||| ||||||||| ||||||||||||||||||||| | |||||||||||||||    
T  10626967 caactgaagaagtctggaaaaattatctgaaggtacgacttaattgaatttta 10626915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 221 - 322
Target Start/End: Complemental strand, 19512763 - 19512662
Alignment:
Q  221 gagttctattcactgttgcagaacaccggatttggctggaatgctgaaacaaacactgttactgcaagtgaagaagtttggaaaaattatctgaaggtat 320  Q
    |||||||||||||| ||||| ||||| | |||||| |||||||| ||||| |||| |||||||||||||||||| || ||| |||||||||| |||||||    
T  19512763 gagttctattcacttttgcaaaacacagaatttgggtggaatgcagaaaccaacattgttactgcaagtgaagaggtctggcaaaattatcttaaggtat 19512664  T
Q  321 gg 322  Q
    ||    
T  19512663 gg 19512662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 322
Target Start/End: Original strand, 35338407 - 35338550
Alignment:
Q  179 caactaaaggcaaagatgcataggttgcgtgccatgtattgtgagttctattcactgttgcagaacaccggatttggctggaatgctgaaacaaacactg 278  Q
    |||||||||||||| |||||| |  | || ||||||| |  |||||| |||||||| ||||| ||    |||||||  |||||| | ||||| |||||||    
T  35338407 caactaaaggcaaaaatgcattgtctacgagccatgtttcatgagttttattcacttttgcaaaatgttggatttgtgtggaattcagaaaccaacactg 35338506  T
Q  279 ttactgcaagtgaagaagtttggaaaaattatctgaaggtatgg 322  Q
    |||| ||||||||||| |||||||||||||| || |||||||||    
T  35338507 ttaccgcaagtgaagaggtttggaaaaattaccttaaggtatgg 35338550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 35338313 - 35338387
Alignment:
Q  85 aggaaatatgccaaatggtgtgtttcataatagaacatggtcctcaatgatgtataagttgagttccataactaa 159  Q
    |||||||||| ||||||| |||||||||| |||||||||| | || ||||   ||| ||||| ||||||||||||    
T  35338313 aggaaatatgtcaaatggcgtgtttcatactagaacatggacttcgatgactaataggttgaattccataactaa 35338387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 85 - 333
Target Start/End: Complemental strand, 1240972 - 1240724
Alignment:
Q  85 aggaaatatgccaaatggtgtgtttcataatagaacatggtcctcaatgatgtataagttgagttccataactaaacgaccgtttctagctctccaacta 184  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| | |||||||| |||||| || || ||||    |||||    
T  1240972 aggaaatatgccaaatggtgtgtttcatactagaatatggtcctcaatgacgtataagttgaataccataactgaacgactgtatcaagctgataaacta 1240873  T
Q  185 aaggcaaagatgcataggttgcgtgccatgtattgtgagttctattcactgttgcagaacaccggatttggctggaatgctgaaacaaacactgttactg 284  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||    
T  1240872 aaggcaaagatgcataggttgcgagccatgtatcgtgagttctattcactgaagcagaacacaggatttggctggaatgctgaaacaaacactgttactg 1240773  T
Q  285 caagtgaagaagtttggaaaaattatctgaaggtatggcttaattgaat 333  Q
    ||| ||||||||| ||||||||||||||||||||| | |||||||||||    
T  1240772 caactgaagaagtctggaaaaattatctgaaggtacgacttaattgaat 1240724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 221 - 322
Target Start/End: Original strand, 18367874 - 18367975
Alignment:
Q  221 gagttctattcactgttgcagaacaccggatttggctggaatgctgaaacaaacactgttactgcaagtgaagaagtttggaaaaattatctgaaggtat 320  Q
    |||||||||||||| ||||| ||||| | |||||| |||||||| ||||| |||| |||||||||||||||||| || ||| |||||||||| |||||||    
T  18367874 gagttctattcacttttgcaaaacacagaatttgggtggaatgcagaaaccaacattgttactgcaagtgaagaggtctggcaaaattatcttaaggtat 18367973  T
Q  321 gg 322  Q
    ||    
T  18367974 gg 18367975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 221 - 322
Target Start/End: Complemental strand, 36595049 - 36594948
Alignment:
Q  221 gagttctattcactgttgcagaacaccggatttggctggaatgctgaaacaaacactgttactgcaagtgaagaagtttggaaaaattatctgaaggtat 320  Q
    |||||||||||||| ||||| ||||| | |||||| |||||||| ||||| |||| |||||||||||||||||| || ||| |||||||||| |||||||    
T  36595049 gagttctattcacttttgcaaaacacagaatttgggtggaatgcagaaaccaacattgttactgcaagtgaagaggtctggcaaaattatcttaaggtat 36594950  T
Q  321 gg 322  Q
    ||    
T  36594949 gg 36594948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 356 - 459
Target Start/End: Complemental strand, 35487356 - 35487253
Alignment:
Q  356 tattacttatgagattgattcaattaagaaattgagttttcggttcaggtgttaatttatttgaaccgtatcatgctaggtttctgtttgtaccttataa 455  Q
    |||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||    
T  35487356 tattacatatgagattgattcgattgagaaattgagttttcagttcaggtgttaatttgtttgaacggtatcatgctaggtttctgtttttaccttataa 35487257  T
Q  456 taat 459  Q
    ||||    
T  35487256 taat 35487253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 322
Target Start/End: Complemental strand, 42600583 - 42600440
Alignment:
Q  179 caactaaaggcaaagatgcataggttgcgtgccatgtattgtgagttctattcactgttgcagaacaccggatttggctggaatgctgaaacaaacactg 278  Q
    |||||||||||||| ||| ||||| | || || |||| |  ||||||||||||||| ||||| ||||| ||||||   |||||||| ||||| || | ||    
T  42600583 caactaaaggcaaaaatggataggctacgagcgatgtttcatgagttctattcacttttgcaaaacactggatttacttggaatgcagaaaccaatattg 42600484  T
Q  279 ttactgcaagtgaagaagtttggaaaaattatctgaaggtatgg 322  Q
    |||||||||||||||| ||  || |||||||||| |||||||||    
T  42600483 ttactgcaagtgaagaggtccggcaaaattatcttaaggtatgg 42600440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 42600677 - 42600628
Alignment:
Q  85 aggaaatatgccaaatggtgtgtttcataatagaacatggtcctcaatga 134  Q
    ||||||||||||||||||||||||||||| ||| |||||| |||| ||||    
T  42600677 aggaaatatgccaaatggtgtgtttcatactagcacatggacctcgatga 42600628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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