View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2834_low_4 (Length: 240)
Name: NF2834_low_4
Description: NF2834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2834_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 4626821 - 4627005
Alignment:
| Q |
1 |
catgttcgaaagctgaggtccagaaaataccaccatctgcctgtcaccttcatgtggaggcactccaaattgactagatgaaccagagggcatctaataa |
100 |
Q |
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| T |
4626821 |
catgttcgaaagctgaggtccagaaaataccaccatctgcctgtcaccttcatgtggaggcactccaaattgactagatgaaccagagggcatctaataa |
4626920 |
T |
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| Q |
101 |
aaattaaacaatacaaaaattaggccaattgtgagtttgaagtttgattatacaaattaaagacatacataaagtgatttaaaca |
185 |
Q |
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| T |
4626921 |
aaattaaacaatacaaaaattaggccaattgtgagtttgaagtttgattatacaaattaaagacatacataaagtgatttaaaca |
4627005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 4627067 - 4627103
Alignment:
| Q |
185 |
accattctctctcccacatgtcagtctctctcaccca |
221 |
Q |
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| T |
4627067 |
accattctctctcccacatgtcagtctctctcaccca |
4627103 |
T |
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