View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2835_high_19 (Length: 259)
Name: NF2835_high_19
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 75 - 252
Target Start/End: Original strand, 49609640 - 49609817
Alignment:
| Q |
75 |
ccgtagattgtggaatcatcagtgtcgtaaacacagatagttccgtcgacattgggaatctctaaggcctgaaaagcgtaaagggatgaaagatattaaa |
174 |
Q |
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| T |
49609640 |
ccgtagatggtggaatcatcagtgtcgtaaacacagatagtttcgtcgacattgggaatctctaaggcctgaaaagcgtaaagggatgaaagatattaaa |
49609739 |
T |
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| Q |
175 |
gaaacaaaagaaaacaagagtagtggaatcgtggtatgaataaatgagacaggggttacccagatacgatattcttcg |
252 |
Q |
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| T |
49609740 |
gaaacaaaagaaaacaagagtagtggactcgtggtatgaataaatgagacaggggttacccagatacgattttcttcg |
49609817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 49609511 - 49609570
Alignment:
| Q |
18 |
gagagaatgtacgagatgatggcacaagtggttgctcgaccggagatgagacctttaccg |
77 |
Q |
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| T |
49609511 |
gagagaatgtacgagatgatggcacacgtgtttgcgcgaccggagatgagacctttaccg |
49609570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 188
Target Start/End: Original strand, 49614720 - 49614832
Alignment:
| Q |
75 |
ccgtagattgtggaatcatcagtgtcgtaaacacagatagttccgtcgacattgggaatctctaaggcctgaaaagcgtaaagggatgaaagatattaaa |
174 |
Q |
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||||||| |||||| |||| ||| ||| || ||||||||||||||| | ||||||| |||| |||||||||| |||||||||| ||||| ||| | |
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| T |
49614720 |
ccgtagaaggtggaagcatcggtggtgtatacgcagatagttccgtcgtcgttgggaagctcttcagcctgaaaag-gtaaagggattaaagagatttga |
49614818 |
T |
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| Q |
175 |
gaaacaaaagaaaa |
188 |
Q |
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| T |
49614819 |
gaaacaaaacaaaa |
49614832 |
T |
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