View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2835_high_2 (Length: 575)
Name: NF2835_high_2
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_high_2 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 7 - 575
Target Start/End: Original strand, 16732952 - 16733520
Alignment:
| Q |
7 |
tatagtttcacttgatatttcaaatttgaacatttcaggttcattttcacctcaaatcacaaaactctacaatcttttaaatgtttcgatccaaggaaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16732952 |
tatagtttcacttgatatttcaaatttgaacatttcaggttcattttcacctcaaatcacaaaactctacaatcttgtaaatgtttcgatccaaggaaat |
16733051 |
T |
|
| Q |
107 |
agcttcaatggtgagtttcccactgaaattcacaagctacaaagattgaaatgcctcaacatatcgaacaatatgtttagtggaaacttgagttgggaat |
206 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16733052 |
agcttctatggtgagtttccaactgaaattcacaagctacaaagattgaaatgcctcaacatatcgaacaatatgtttagtggaaacttgagttgggaat |
16733151 |
T |
|
| Q |
207 |
tcaacaaattgaaagagcttgaagtgttggatatttacaacaatggttttaacggttcgcttcctcgtggtgttactcaagtttcaagtctcaagcatct |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16733152 |
tcaacaaattgaaagagcttgaagtgttggatatttacaacaacggttttaacggttcgcttcctcgtggtgttactcaagtttcaagtctcaagcatct |
16733251 |
T |
|
| Q |
307 |
gaattttggagggaattacttttctggaaaaattcctacaagttatggcgaaatgaaacagcttaattttttgtctcttgctggaaatgatttgagtggt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16733252 |
gaattttggagggaattacttttctggaaaaattcctacaagttatggagaaatgaaacagcttaattttttgtctcttgctggaaatgatttgagtggt |
16733351 |
T |
|
| Q |
407 |
tttttacctagtgagcttggaaatttgactagtttggaaaatctttatttaggttatttcaatcaatttgatggtggagttccaaaagagtttggtaagt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16733352 |
tttttacctagtgagcttggaaatttgactagtttggaaaatctttatttaggttatttcaatcaatttgatggtggagttccaaaagagtttggtaagt |
16733451 |
T |
|
| Q |
507 |
tgattaatttggttcatttagacctagcaagttgtttcttgaaaggttcaattccacttgagttaggtc |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16733452 |
tgattaatttggttcatttagacctagcaagttgtttcttgaaaggttcaattccacttgagttaggtc |
16733520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 430
Target Start/End: Complemental strand, 25547099 - 25547034
Alignment:
| Q |
365 |
cagcttaattttttgtctcttgctggaaatgatttgagtggttttttacctagtgagcttggaaat |
430 |
Q |
| |
|
|||||||| | |||||||||||| || ||||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
25547099 |
cagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaat |
25547034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 430
Target Start/End: Complemental strand, 39227900 - 39227835
Alignment:
| Q |
365 |
cagcttaattttttgtctcttgctggaaatgatttgagtggttttttacctagtgagcttggaaat |
430 |
Q |
| |
|
|||||||| | |||||||||||| || ||||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
39227900 |
cagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaat |
39227835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University