View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2835_high_22 (Length: 250)
Name: NF2835_high_22
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 6249204 - 6249445
Alignment:
| Q |
1 |
ttaattgaaacaccttttcttccaaatcgcccactacgacctatacggtggagatagttttcaggttgagttggtagatcatagtttatgaccaaagaca |
100 |
Q |
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| T |
6249204 |
ttaattgaaacaccttttcttccaaatcgcccactacgacctatacggtggagatagttttcaggttgagttggtagatcatagtttatgaccaaagata |
6249303 |
T |
|
| Q |
101 |
cctgctgcacatcgataccacgggccaagaggtcggtggttatgagaactcgagaagagccagaccgaaactcacgcatgatgatatccctagtgttctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6249304 |
cctgctgcacatcgataccacgggccaagaggtcggtggttatgagaactcgagaagagccagaccgaaactcacgcatgatgatatccctagtgttctg |
6249403 |
T |
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| Q |
201 |
gtccatgtcaccatgagtggctgagactgtatgatctctgct |
242 |
Q |
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| T |
6249404 |
gtccatgtcaccatgagtggctgagactgtatgatctctgct |
6249445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 6240812 - 6241015
Alignment:
| Q |
13 |
ccttttcttccaaatcgcccactacgacctatacggtggagatagttttcaggttgagttggtagatcatagtttatgaccaaagacacctgctgcacat |
112 |
Q |
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|||||||||||||||||||| | | | ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| | |||||||| |
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| T |
6240812 |
ccttttcttccaaatcgccctttgtggcatatacggtggagatagttttcaggtagagttgggagatcatagtttatgaccagagacacttcctgcacat |
6240911 |
T |
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| Q |
113 |
cgataccacgggccaagaggtcggtggttatgagaactcgagaagagccagaccgaaactcacgcatgatgatatccctagtgttctggtccatgtcacc |
212 |
Q |
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| T |
6240912 |
ctaaaccgtagaccaaggggtcggtggtaatgagaatctgaggagaaccagactggaaattacgtacgatgatatccctagtgttctggtccatgtcatc |
6241011 |
T |
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| Q |
213 |
atga |
216 |
Q |
| |
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|||| |
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| T |
6241012 |
atga |
6241015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 6226483 - 6226531
Alignment:
| Q |
40 |
cctatacggtggagatagttttcaggttgagttggtagatcatagttta |
88 |
Q |
| |
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||||||||||| |||||||||||||| |||||| ||||||||||||| |
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| T |
6226483 |
cctatacggtgaagatagttttcaggcacagttgggagatcatagttta |
6226531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 42719102 - 42718870
Alignment:
| Q |
9 |
aacaccttttcttccaaatcgcccactacgacctatacggtggagatagttttcaggttgagttggtagatcatagtttatgaccaaagacacctgctgc |
108 |
Q |
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|||||||||||||||||| |||||||| || || ||||| |||||||||||||||||||| || || | |||||| |||||||||| |||||| ||||| |
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| T |
42719102 |
aacaccttttcttccaaaacgcccacttcgcccaatacgatggagatagttttcaggttgggtaggcaaatcataatttatgaccagagacacttgctga |
42719003 |
T |
|
| Q |
109 |
acatcgataccacgggccaagaggtcggtggttatgagaactcgagaagagccagaccgaaactcacgcatgatgatatccctagtgttctggtccatgt |
208 |
Q |
| |
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||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||| || || ||||||||||||||||| | |||||| |||||||||| |
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| T |
42719002 |
acatcaataccacgggccaaaaggtcagtggtaatgagaactcgagaagagccagagcggaattcacgcatgatgatatcacgagtgttttggtccatgt |
42718903 |
T |
|
| Q |
209 |
caccatgagtggctgagactgtatgatctctgc |
241 |
Q |
| |
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| ||||| ||||||||||| ||||| ||||||| |
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| T |
42718902 |
ctccatgggtggctgagacagtatggtctctgc |
42718870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 17533322 - 17533543
Alignment:
| Q |
9 |
aacaccttttcttccaaatcgcccactacgacctatacggtggagatagttttcaggttgagttggtagatcatagtttatgaccaaagacacctgctgc |
108 |
Q |
| |
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||||||||| |||||||| | ||||||||||| ||||| || |||||||| ||||| || ||||| |||||||| ||||| || |||||||| ||||| |
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| T |
17533322 |
aacacctttccttccaaaccttccactacgaccaatacgatgcagatagttctcaggctgtgttgggagatcataatttataactaaagacacttgctga |
17533421 |
T |
|
| Q |
109 |
acatcgataccacgggccaagaggtcggtggttatgagaactcgagaagagccagaccgaaactcacgcatgatgatatccctagtgttctggtccatgt |
208 |
Q |
| |
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||||| |||||||| || | || || || ||||| | ||| || ||||| ||||| || || ||||||||||| || |||||||||||||||||||| | |
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| T |
17533422 |
acatcaataccacgagcaagaagatcagtagttattaaaacacgggaagatccagaacggaattcacgcatgataatgtccctagtgttctggtccatat |
17533521 |
T |
|
| Q |
209 |
caccatgagtggctgagactgt |
230 |
Q |
| |
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| || ||||| || |||||||| |
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| T |
17533522 |
ctccgtgagttgccgagactgt |
17533543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 52329556 - 52329327
Alignment:
| Q |
9 |
aacaccttttcttccaaatcgcccactacgacctatacggtggagatagttttcaggttgagttggtagatcatagtttatgaccaaagacacctgctgc |
108 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||| ||||| ||||||||||| ||||| || || || |||||| | ||||| |||| |||||| || || |
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| T |
52329556 |
aacaccttttctaccaaaccttccactacgaccaatacgatggagatagttctcaggctgcgtagggagatcaaaatttataaccagagacacttgttgg |
52329457 |
T |
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| Q |
109 |
acatcgataccacgggccaagaggtcggtggttatgagaactcgagaagagccagaccgaaactcacgcatgatgatatccctagtgttctggtccatgt |
208 |
Q |
| |
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||||| |||||||| ||||| || ||||| ||||| | ||| |||||||| ||||| || || |||||||| || || ||||| || || || ||||||| |
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| T |
52329456 |
acatcaataccacgagccaacagatcggtagttattaaaacacgagaagacccagaacggaattcacgcataataatgtccctggtattttgatccatgt |
52329357 |
T |
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| Q |
209 |
caccatgagtggctgagactgtatgatctc |
238 |
Q |
| |
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| || ||||| |||||||||||||| |||| |
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| T |
52329356 |
ctccgtgagtagctgagactgtatggtctc |
52329327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 17545486 - 17545425
Alignment:
| Q |
181 |
atgatatccctagtgttctggtccatgtcaccatgagtggctgagactgtatgatctctgct |
242 |
Q |
| |
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||||||||||||||||||||||||||||||| || || |||| ||| ||||||||||||| |
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| T |
17545486 |
atgatatccctagtgttctggtccatgtcactctggatgactgacactttatgatctctgct |
17545425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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