View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2835_high_24 (Length: 242)
Name: NF2835_high_24
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 21836300 - 21836086
Alignment:
| Q |
18 |
ctgatagaaaccattatgatagcattcacaaacatatatattgcttttggtttcaacagccaaatgtgagtgtcacattggtttagtgttctacacgagt |
117 |
Q |
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| T |
21836300 |
ctgatagaaaccattatgatagcattcacaaacatatatattgcttttggtttcaacagccaaatgtgagt--cacattggtttagtgttctacatgagt |
21836203 |
T |
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| Q |
118 |
cc--------aaactcttcgaacaagttgaaatgattttgcaatgaccgagtcttttaactaactattttcacaagttgaatctgcctaaatacctcaac |
209 |
Q |
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| T |
21836202 |
cagtacgaataaactcttcgaacaagttgaaatgattttgcaatgaccgagtcttttaattaactattttcacaagttgaatctgtctaaatacctcaac |
21836103 |
T |
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| Q |
210 |
atttttagaagctcctt |
226 |
Q |
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| T |
21836102 |
atttttagaagctcctt |
21836086 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 8537549 - 8537640
Alignment:
| Q |
136 |
ttgaaatgattttgcaatgaccgagtcttttaactaactattttc-aca-agtt-gaatctgcctaaatacctcaacatttttagaagctcc |
224 |
Q |
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| T |
8537549 |
ttgaaacgatcttgcaatgaccaagtcttttaattaactattttctgcagagttaaaatcagcctatatacctcaacatttttagaagctcc |
8537640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 37046722 - 37046690
Alignment:
| Q |
193 |
tgcctaaatacctcaacatttttagaagctcct |
225 |
Q |
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| T |
37046722 |
tgcctatatacctcaacatttttagaagctcct |
37046690 |
T |
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