View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2835_high_27 (Length: 234)
Name: NF2835_high_27
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_high_27 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 40 - 234
Target Start/End: Original strand, 2982406 - 2982608
Alignment:
| Q |
40 |
cattgtaacctaaatgcattgccatattggatatgcaacatctcatcacttcaacacattgaggtgtgcggttgtagagattt--------tgcctgagg |
131 |
Q |
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| T |
2982406 |
cattgtgacctaaatgcattgccatattggatatgcaacatctcatcacttcaacacattgaggtgtgcggttgtagagatttggaagatctgcctgagg |
2982505 |
T |
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| Q |
132 |
caataccacgtcttacaaacttacataccttagaaatcattgaatgtccattcttagctcaacaatgtcagacagaaacaagtgcaacttggtctaaaat |
231 |
Q |
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| T |
2982506 |
caatgccacgtcttacaaacttacataccttagaaatcattgaatgtccattcttagctcaacaatgtgagacagaaacaagtgcaacttggtctaaaat |
2982605 |
T |
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| Q |
232 |
tgc |
234 |
Q |
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||| |
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| T |
2982606 |
tgc |
2982608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 2709221 - 2709029
Alignment:
| Q |
50 |
taaatgcattgccatattggatatgcaacatctcatcacttcaacacattgaggtgtgcggttgtagagattt--------tgcctgaggcaataccacg |
141 |
Q |
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| T |
2709221 |
taaaggcattaccagattggatatgcaacatctcatcacttcagcatcttaaggtgaaggaatgcagagatttggtagatctgcctgacggaatgccacg |
2709122 |
T |
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| Q |
142 |
tcttacaaacttacataccttagaaatcattgaatgtccattcttagctcaacaatgtcagacagaaacaagtgcaacttggtctaaaattgc |
234 |
Q |
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| T |
2709121 |
ccttacaaaattacataccttagaaatcattggatgtccactcttaattgacgaatgtcagagagaagcaagtgtaacttgctctaaaattgc |
2709029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 3004604 - 3004698
Alignment:
| Q |
140 |
cgtcttacaaacttacataccttagaaatcattgaatgtccattcttagctcaacaatgtcagacagaaacaagtgcaacttggtctaaaattgc |
234 |
Q |
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| T |
3004604 |
cgtcttactaacttatgcaccttagaattcattaaatgtccacttttagttgaagaatgccagacagaaacaagtgcaatttggtctaaaattgc |
3004698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 233
Target Start/End: Complemental strand, 2707970 - 2707776
Alignment:
| Q |
47 |
acctaaatgcattgccatattggatatgcaacatctcatcacttcaacacattgaggtgtgcggttg-tagagattt--------tgcctgaggcaatac |
137 |
Q |
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| T |
2707970 |
acctaaaggcattaccagattggatatgcaacatctcatcacttcaacgtatcgagatgaagtcttgctata-atttggcattgctgcctgatggaatga |
2707872 |
T |
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| Q |
138 |
cacgtcttacaaacttacataccttagaaatcattgaatgtccattcttagctcaacaatgtcagacagaaacaagtgcaacttggtctaaaattg |
233 |
Q |
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| T |
2707871 |
cacgtcttacaaacttacataccttagaaatcaatagttgtccactcttaattgaggaatgtcagacaaaaacaagtgcaacttggtctaaaattg |
2707776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 2991581 - 2991631
Alignment:
| Q |
138 |
cacgtcttacaaacttacataccttagaaatcattgaatgtccattcttag |
188 |
Q |
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| T |
2991581 |
cacgtcttacaaacttacacaccttagaaatcattggatgttcaatcttag |
2991631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 9849047 - 9848999
Alignment:
| Q |
47 |
acctaaatgcattgccatattggatatgcaacatctcatcacttcaaca |
95 |
Q |
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| T |
9849047 |
acctaaatacactgccatattgggtatgcaacctatcatcacttcaaca |
9848999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 18357981 - 18358031
Alignment:
| Q |
123 |
tgcctgaggcaataccacgtcttacaaacttacataccttagaaatcattg |
173 |
Q |
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| T |
18357981 |
tgcctgaaggaatgccacgtcttacaaacttacacaccttagaaatcattg |
18358031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 18357900 - 18357942
Alignment:
| Q |
50 |
taaatgcattgccatattggatatgcaacatctcatcacttca |
92 |
Q |
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| T |
18357900 |
taaaggcattaccagattggatatgcaacatctcatcacttca |
18357942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 10753518 - 10753471
Alignment:
| Q |
140 |
cgtcttacaaacttacataccttagaaatcattgaatgtccattctta |
187 |
Q |
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| T |
10753518 |
cgtcttaccaacttaaaaaccttagaaatcattgaatgtccactctta |
10753471 |
T |
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