View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2835_high_29 (Length: 223)
Name: NF2835_high_29
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 28884471 - 28884678
Alignment:
| Q |
1 |
tttgagactgttaaaatgttggcctcaaatggtgtcaaggtgatgctcacagctagagatgagaaaaaaggaaatgaagccattgagaaattgaaacagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
28884471 |
tttgagactgttaaaatgttggcctcaaatggtgtcaaggtggtgcttacagctagagatgagaaaaaagggaatgaagccattcagaaattgaaacagt |
28884570 |
T |
|
| Q |
101 |
ttggtctctctgaccaagttatgtttcaccaacttgatgtcactgactctgctagtattacttcacttgtacagttttttaagacacagtttgggagact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28884571 |
ttggtctctctgaccaagttatgtttcaccaacttgatgtcactgactctgctagtattacttcacttgtacagttttttaagacacagtttgggagact |
28884670 |
T |
|
| Q |
201 |
tgatatct |
208 |
Q |
| |
|
|||||||| |
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| T |
28884671 |
tgatatct |
28884678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 28879578 - 28879785
Alignment:
| Q |
1 |
tttgagactgttaaaatgttggcctcaaatggtgtcaaggtgatgctcacagctagagatgagaaaaaaggaaatgaagccattgagaaattgaaacagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||| |
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| T |
28879578 |
tttgagactgttaaaatgttggcctcaaatggtgtcaaggtgatgctcacagctagagatgagaaaaaggggaatgaagccattcagaaattgaaacagt |
28879677 |
T |
|
| Q |
101 |
ttggtctctctgaccaagttatgtttcaccaacttgatgtcactgactctgctagtattacttcacttgtacagttttttaagacacagtttgggagact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||| |||||||||||||||||||||| |
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| T |
28879678 |
ttggtctctctgaccaagttatgtttcaccaacttgatgtcactgaccctgctagtattacttcactggtagaatttgttaagacacagtttgggagact |
28879777 |
T |
|
| Q |
201 |
tgatatct |
208 |
Q |
| |
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|||||||| |
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| T |
28879778 |
tgatatct |
28879785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 11952826 - 11952742
Alignment:
| Q |
124 |
tttcaccaacttgatgtcactgactctgctagtattacttcacttgtacagttttttaagacacagtttgggagacttgatatct |
208 |
Q |
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||||| ||||||||||| ||||| || ||||||| ||||| | || ||||| ||||||| |||||||| ||||||||||||| |
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| T |
11952826 |
tttcatcaacttgatgttactgatccttttagtattgcttcattggttgagtttgttaagactcagtttggaagacttgatatct |
11952742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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