View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2835_high_5 (Length: 525)
Name: NF2835_high_5
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 26849446 - 26849085
Alignment:
| Q |
1 |
ataagtgttggaaacagtattgtaactactattggaacatcaatagttgctctagaagcaccaacagtcacaacatcaacaacaacaccaggaagtttgg |
100 |
Q |
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| T |
26849446 |
ataagtgttggaaacagtattgtaactactattggaacatcaatagttgctttagaagcaccaacagtcacaccaacaacaacaacaccaggaagtttgg |
26849347 |
T |
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| Q |
101 |
atttgtttggtaagaaaaagagaggtagaccaagaaaatatgatgctgatggaaacctaaatccaagttacaagaagattgttaaaacaacaacaccaat |
200 |
Q |
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| T |
26849346 |
atttgtttggtaagaaaaagagaggtagaccaagaaaatatgatgctgatggaaacctaaatccaagttacaagaagattgttaaaacaacaacaccaat |
26849247 |
T |
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| Q |
201 |
actaacaacaccaccaggattcactttgtctacaaatgagtttgcttccaaaaagggtcgtggtaaatcaactgggtttgttaattaccaaaccttttct |
300 |
Q |
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| T |
26849246 |
actaacatcaccaccaggattcactttgtctacaaatgagtttgcttccaaaaagggtcgtggtaaatcaactgggtttgttaattaccaaaccttttct |
26849147 |
T |
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| Q |
301 |
tcttttggtgagttttcaaactaacaacttttgttt---taaaaaataaatccttacccatg |
359 |
Q |
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| T |
26849146 |
tcttttggtgagttttctaactaacgacttttgtttaaaaaaaaaaaaaatccttacccatg |
26849085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 421
Target Start/End: Complemental strand, 26849063 - 26849024
Alignment:
| Q |
382 |
acaatggaatcttaaagttttgaacttgtactcaaaatgt |
421 |
Q |
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| T |
26849063 |
acaatggaatcttaaagttttgaacttgtactcaaaatgt |
26849024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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