View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2835_high_6 (Length: 456)

Name: NF2835_high_6
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2835_high_6
NF2835_high_6
[»] chr4 (6 HSPs)
chr4 (129-329)||(40675142-40675342)
chr4 (129-329)||(30652801-30653000)
chr4 (19-98)||(40676079-40676163)
chr4 (363-397)||(29469761-29469795)
chr4 (363-397)||(8084789-8084823)
chr4 (363-397)||(23671033-23671067)
[»] chr7 (4 HSPs)
chr7 (209-329)||(46329561-46329683)
chr7 (363-397)||(4639347-4639381)
chr7 (363-397)||(14742049-14742083)
chr7 (363-391)||(37915527-37915555)
[»] chr8 (1 HSPs)
chr8 (363-397)||(19484811-19484845)
[»] chr6 (1 HSPs)
chr6 (363-397)||(6788978-6789012)
[»] chr5 (4 HSPs)
chr5 (363-397)||(37797587-37797621)
chr5 (363-397)||(5650245-5650279)
chr5 (363-397)||(7124344-7124378)
chr5 (178-210)||(15773877-15773909)
[»] chr3 (3 HSPs)
chr3 (363-397)||(49296712-49296746)
chr3 (364-397)||(8599553-8599586)
chr3 (363-397)||(22488536-22488570)
[»] chr1 (8 HSPs)
chr1 (363-397)||(4005965-4005999)
chr1 (363-397)||(9174488-9174522)
chr1 (363-397)||(26758234-26758268)
chr1 (363-397)||(41354039-41354073)
chr1 (363-397)||(8147961-8147995)
chr1 (363-397)||(18247011-18247045)
chr1 (363-397)||(51107800-51107834)
chr1 (364-397)||(1242751-1242784)
[»] scaffold0002 (1 HSPs)
scaffold0002 (363-397)||(16266-16300)
[»] chr2 (2 HSPs)
chr2 (363-397)||(15224634-15224668)
chr2 (363-397)||(18899372-18899406)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 129 - 329
Target Start/End: Complemental strand, 40675342 - 40675142
Alignment:
Q  129 tttgctcttacgtataaattatgtttataannnnnnncccct-acaatgctatatgtgatatatgaattcaaattatatatttgtttaattagcttcatt 227  Q
    ||||||||| ||||||||||||||||||||       ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  40675342 tttgctctt-cgtataaattatgtttataatttttttccccttacaatgctatatgtgatatatgatttcaaattatatatttgtttaattaacttcatt 40675244  T
Q  228 atcgtannnnnnnnaggagataatcgtagctttttagtttacaaattttatggaaaattatannnnnnnctttaaactagcactaataaatatgatatat 327  Q
    ||||||        |||||||||||||| ||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||||||||||    
T  40675243 atcgtattttttttaggagataatcgtatctttttagtttacaatttttatggaaaattatatatttttctttaaactagcactaataaatatgatatat 40675144  T
Q  328 gt 329  Q
    ||    
T  40675143 gt 40675142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 129 - 329
Target Start/End: Original strand, 30652801 - 30653000
Alignment:
Q  129 tttgctcttacgtataaattatgtttataannnnnnncccctacaatgctatatgtgatatatgaattcaaattatatatttgtttaattagcttcatta 228  Q
    ||||||||| ||||||||||||||||||||       ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30652801 tttgctctt-cgtataaattatgtttataatttttttcccttacaatgctatatgtgatatatgaattcaaattatatatttgtttaattaacttcatta 30652899  T
Q  229 tcgtannnnnnnnaggagataatcgtagctttttagtttacaaatt-ttatggaaaattatannnnnnnctttaaactagcactaataaatatgatatat 327  Q
    |||||        ||||||||||| || ||||||||||||||| || ||||||||| |||||       |||||||||||||||||||||||||||||||    
T  30652900 tcgta-tttttttaggagataatcatatctttttagtttacaatttcttatggaaagttatatatttttctttaaactagcactaataaatatgatatat 30652998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 40676163 - 40676079
Alignment:
Q  19 aattgatcacttttagaaaagttttgtctgcttataaacaca---tgttttatgttt--agaagggatctaaattggatgatttg 98  Q
    ||||||||||||||||||||||||||||||||||||| ||||   ||||||||||||  ||||||||||||||||||||||||||    
T  40676163 aattgatcacttttagaaaagttttgtctgcttataaccacatgttgttttatgtttagagaagggatctaaattggatgatttg 40676079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 29469795 - 29469761
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    |||||||||||||||||||||||||||||||||||    
T  29469795 catatgtaagctaatataatactgtaaaaagatca 29469761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 8084823 - 8084789
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    ||||||||||||||||||||||| |||||||||||    
T  8084823 catatgtaagctaatataatactataaaaagatca 8084789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 397
Target Start/End: Original strand, 23671033 - 23671067
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    ||||||||||||||||||||| |||||||||||||    
T  23671033 catatgtaagctaatataatattgtaaaaagatca 23671067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 209 - 329
Target Start/End: Complemental strand, 46329683 - 46329561
Alignment:
Q  209 ttgtttaattagcttcattatcgtannnnnnnnaggagataatcgtagctttttagtttacaaatttt-atggaaaattatannnnnnn-ctttaaacta 306  Q
    ||||||||||| ||||||||| |||        |||||||||||||| ||||||||||||||| |||| |||||||||||||        ||||||||||    
T  46329683 ttgtttaattaacttcattatagtattttttttaggagataatcgtatctttttagtttacaattttttatggaaaattatactttttttctttaaacta 46329584  T
Q  307 gcactaataaatatgatatatgt 329  Q
    |||||||||||||||||||||||    
T  46329583 gcactaataaatatgatatatgt 46329561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 397
Target Start/End: Original strand, 4639347 - 4639381
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    |||||||||||||||||||||||||||||||||||    
T  4639347 catatgtaagctaatataatactgtaaaaagatca 4639381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 14742083 - 14742049
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    ||||||||| |||||||||||||||||||||||||    
T  14742083 catatgtaaactaatataatactgtaaaaagatca 14742049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 391
Target Start/End: Original strand, 37915527 - 37915555
Alignment:
Q  363 catatgtaagctaatataatactgtaaaa 391  Q
    |||||||||||||||||||||||||||||    
T  37915527 catatgtaagctaatataatactgtaaaa 37915555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 19484845 - 19484811
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    |||||||||||||||||||||||||||||||||||    
T  19484845 catatgtaagctaatataatactgtaaaaagatca 19484811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 6789012 - 6788978
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    |||||||||||||||||||||||||||||||||||    
T  6789012 catatgtaagctaatataatactgtaaaaagatca 6788978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 397
Target Start/End: Original strand, 37797587 - 37797621
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    |||||||||||||||||||||||||||||||||||    
T  37797587 catatgtaagctaatataatactgtaaaaagatca 37797621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 397
Target Start/End: Original strand, 5650245 - 5650279
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    ||||||||||||||||||||| |||||||||||||    
T  5650245 catatgtaagctaatataatattgtaaaaagatca 5650279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 397
Target Start/End: Original strand, 7124344 - 7124378
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    ||||| |||||||||||||||||||||||||||||    
T  7124344 catatataagctaatataatactgtaaaaagatca 7124378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 15773877 - 15773909
Alignment:
Q  178 tatatgtgatatatgaattcaaattatatattt 210  Q
    |||||||||||||||||||||| ||||||||||    
T  15773877 tatatgtgatatatgaattcaatttatatattt 15773909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 49296746 - 49296712
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    |||||||||||||||||||||||||||||||||||    
T  49296746 catatgtaagctaatataatactgtaaaaagatca 49296712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 397
Target Start/End: Complemental strand, 8599586 - 8599553
Alignment:
Q  364 atatgtaagctaatataatactgtaaaaagatca 397  Q
    ||||||||||||||||||||||||||||||||||    
T  8599586 atatgtaagctaatataatactgtaaaaagatca 8599553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 397
Target Start/End: Original strand, 22488536 - 22488570
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    ||||||||||||||||||||| |||||||||||||    
T  22488536 catatgtaagctaatataatattgtaaaaagatca 22488570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 4005999 - 4005965
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    |||||||||||||||||||||||||||||||||||    
T  4005999 catatgtaagctaatataatactgtaaaaagatca 4005965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 9174522 - 9174488
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    |||||||||||||||||||||||||||||||||||    
T  9174522 catatgtaagctaatataatactgtaaaaagatca 9174488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 26758268 - 26758234
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    |||||||||||||||||||||||||||||||||||    
T  26758268 catatgtaagctaatataatactgtaaaaagatca 26758234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 41354073 - 41354039
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    |||||||||||||||||||||||||||||||||||    
T  41354073 catatgtaagctaatataatactgtaaaaagatca 41354039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 8147995 - 8147961
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    |||||||||||||||||||||| ||||||||||||    
T  8147995 catatgtaagctaatataataccgtaaaaagatca 8147961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 397
Target Start/End: Original strand, 18247011 - 18247045
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    ||||| |||||||||||||||||||||||||||||    
T  18247011 catatataagctaatataatactgtaaaaagatca 18247045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 51107834 - 51107800
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    ||||| |||||||||||||||||||||||||||||    
T  51107834 catatataagctaatataatactgtaaaaagatca 51107800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 397
Target Start/End: Original strand, 1242751 - 1242784
Alignment:
Q  364 atatgtaagctaatataatactgtaaaaagatca 397  Q
    ||||||||||||||||||| ||||||||||||||    
T  1242751 atatgtaagctaatataattctgtaaaaagatca 1242784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 397
Target Start/End: Original strand, 16266 - 16300
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    ||||||||||||||||||||||||||||| |||||    
T  16266 catatgtaagctaatataatactgtaaaaggatca 16300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 15224668 - 15224634
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    ||||||||||||||||||||| |||||||||||||    
T  15224668 catatgtaagctaatataatattgtaaaaagatca 15224634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 397
Target Start/End: Original strand, 18899372 - 18899406
Alignment:
Q  363 catatgtaagctaatataatactgtaaaaagatca 397  Q
    ||||||||| |||||||||||||||||||||||||    
T  18899372 catatgtaaactaatataatactgtaaaaagatca 18899406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University