View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2835_low_11 (Length: 438)
Name: NF2835_low_11
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 33 - 387
Target Start/End: Original strand, 26314211 - 26314565
Alignment:
| Q |
33 |
atgcatgttgaattcagttgaaatgaattgagcactttcttccattgaaattttgttgattaattgatgcaaaactctttcttgctcttctccatcactc |
132 |
Q |
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| T |
26314211 |
atgcatgttgaattcagttgaaatgaattgagcactttcttccattgaaattttgttgattaattgatgcaaaactctttcttgctcttctccatcactc |
26314310 |
T |
|
| Q |
133 |
cattcataaattttagctttaacaagtgaaggatctttgcatatcaaggcccatacaggaaaattcttccttggcatcacaaagtctttatctttaaggc |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26314311 |
cattcataaattttagctttaacaagtgaaggatctttgcatatcaagtcccatacaggaaaattcttccttggcatcacaaagtctttttctttaaggc |
26314410 |
T |
|
| Q |
233 |
ttaagcttggacaataatctccactaccatcaccaagatagataaatcttttatttttctcacttgatatagagtcttggattctctttatgattagtcc |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26314411 |
ttaagcttggacaataatctccactaccatcaccaagatagataaatcttttatttttctcacttgatatagagtcttggattctctttatgattagtcc |
26314510 |
T |
|
| Q |
333 |
ctataatcatatgatttagaatatgaatttggcatagaacattatatatatgact |
387 |
Q |
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|| |||| || |||| ||||||| ||| |||||||| ||||||||||| |||||| |
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| T |
26314511 |
ctgtaatgatttgatgtagaataagaacttggcataaaacattatatacatgact |
26314565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 40 - 376
Target Start/End: Original strand, 43109167 - 43109503
Alignment:
| Q |
40 |
ttgaattcagttgaaatgaattgagcactttcttccattgaaattttgttgattaattgatgcaaaactctttcttgctcttctccatcactccattcat |
139 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| |
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| T |
43109167 |
ttgaattcagttgaaatgaattcagcagtttcttccattgatattttgttgattaattgatgcaaaaccctttcttgatcttcaccatcactccattcat |
43109266 |
T |
|
| Q |
140 |
aaattttagctttaacaagtgaaggatctttgcatatcaaggcccatacaggaaaattcttccttggcatcacaaagtctttatctttaaggcttaagct |
239 |
Q |
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|||||||||||||||||||||||||||||||||| || || |||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||| |
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| T |
43109267 |
aaattttagctttaacaagtgaaggatctttgcaaattaaatcccacacaggaaaattcttccttggcatcacaaagtctttttctttaagcctcaagct |
43109366 |
T |
|
| Q |
240 |
tggacaataatctccactaccatcaccaagatagataaatcttttatttttctcacttgatatagagtcttggattctctttatgattagtccctataat |
339 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||| |||||||| | |||| ||||||||| ||||||||||| ||||||||||| |||| |||| |
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| T |
43109367 |
tggacaataatctccactaccatccccaagatagataaaccttttattctcttcacatgatatagactcttggattctatttatgattagaccctgtaat |
43109466 |
T |
|
| Q |
340 |
catatgatttagaatatgaatttggcatagaacatta |
376 |
Q |
| |
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||||||| | ||||| ||| ||||||||||| |||| |
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| T |
43109467 |
gatatgatatggaataagaacttggcatagaatatta |
43109503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 50 - 278
Target Start/End: Complemental strand, 5251999 - 5251771
Alignment:
| Q |
50 |
ttgaaatgaattgagcactttcttccattgaaattttgttgattaattgatgcaaaactctttcttgctcttctccatcactccattcataaattttagc |
149 |
Q |
| |
|
||||||||||||||||| |||| || || |||||||||||| |||||| ||||| | ||| ||||||||||||||| ||| ||| ||||| ||| |
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| T |
5251999 |
ttgaaatgaattgagcattttcctcaatgataattttgttgatcaattgaatcaaaatttgttcaagctcttctccatcacaccaaccatgaatttcagc |
5251900 |
T |
|
| Q |
150 |
tttaacaagtgaaggatctttgcatatcaaggcccatacaggaaaattcttccttggcatcacaaagtctttatctttaaggcttaagcttggacaataa |
249 |
Q |
| |
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|||||||||||||| |||||||||||||| |||| || |||||||||||||||||||||| || ||||| ||| |||| ||||| || ||||||||| |
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| T |
5251899 |
cttaacaagtgaagggtctttgcatatcaaatcccacactggaaaattcttccttggcatcatgaaatctttctctctaagccttaaactaggacaataa |
5251800 |
T |
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| Q |
250 |
tctccactaccatcaccaagatagataaa |
278 |
Q |
| |
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|||||| | ||||||||||| |||||||| |
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| T |
5251799 |
tctccaatgccatcaccaaggtagataaa |
5251771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 81 - 278
Target Start/End: Original strand, 5271861 - 5272058
Alignment:
| Q |
81 |
aattttgttgattaattgatgcaaaactctttcttgctcttctccatcactccattcataaattttagctttaacaagtgaaggatctttgcatatcaag |
180 |
Q |
| |
|
|||||||||||| |||||| ||||| | ||| ||||||||||||||| ||| ||| ||||| ||| |||||||||||||| |||||||||||||| |
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| T |
5271861 |
aattttgttgatcaattgaatcaaaatttgttcaagctcttctccatcacaccaaccatgaatttcagccttaacaagtgaagggtctttgcatatcaaa |
5271960 |
T |
|
| Q |
181 |
gcccatacaggaaaattcttccttggcatcacaaagtctttatctttaaggcttaagcttggacaataatctccactaccatcaccaagatagataaa |
278 |
Q |
| |
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|||| || |||||||||||||||||||||||||||||| | ||||||| || ||||| || |||||||||||| |||||||||||| |||||||| |
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| T |
5271961 |
tcccacactggaaaattcttccttggcatcacaaagtctctctctttaaacctcaagctagggcaataatctccagcaccatcaccaaggtagataaa |
5272058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 118 - 281
Target Start/End: Complemental strand, 5269775 - 5269612
Alignment:
| Q |
118 |
tcttctccatcactccattcataaattttagctttaacaagtgaaggatctttgcatatcaaggcccatacaggaaaattcttccttggcatcacaaagt |
217 |
Q |
| |
|
||||||||||||||||| ||| ||||| ||| ||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| |
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| T |
5269775 |
tcttctccatcactccaaccatgaatttcagccttaacaagtgaaggatctttgcatatcaaatcccacactggaaaattcttccttggcatcacaaagt |
5269676 |
T |
|
| Q |
218 |
ctttatctttaaggcttaagcttggacaataatctccactaccatcaccaagatagataaatct |
281 |
Q |
| |
|
|| | ||| |||| || ||||| || ||||| || ||| |||||||||||| ||||||||||| |
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| T |
5269675 |
ctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaatct |
5269612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 118 - 278
Target Start/End: Original strand, 5275887 - 5276047
Alignment:
| Q |
118 |
tcttctccatcactccattcataaattttagctttaacaagtgaaggatctttgcatatcaaggcccatacaggaaaattcttccttggcatcacaaagt |
217 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| |
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| T |
5275887 |
tcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccacactggaaaattcttccttggcatcacaaagt |
5275986 |
T |
|
| Q |
218 |
ctttatctttaaggcttaagcttggacaataatctccactaccatcaccaagatagataaa |
278 |
Q |
| |
|
|| | ||| |||| || || || || ||||| || || |||||||||||| |||||||| |
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|
| T |
5275987 |
ctctttctctaagcctcaaactagggcaatagtcccctgcaccatcaccaaggtagataaa |
5276047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 281
Target Start/End: Complemental strand, 14945163 - 14945038
Alignment:
| Q |
156 |
aagtgaaggatctttgcatatcaaggcccatacaggaaaattcttccttggcatcacaaagtctttatctttaaggcttaagcttggacaataatctcca |
255 |
Q |
| |
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|||| |||| ||||| ||||||||| ||||||| ||||| |||||||||| ||| ||||||||| | ||| |||| || || || || ||||| |||||| |
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| T |
14945163 |
aagtaaagggtcttttcatatcaagtcccatactggaaagttcttccttgacataacaaagtctctttctctaagtctcaaactagggcaatagtctcca |
14945064 |
T |
|
| Q |
256 |
ctaccatcaccaagatagataaatct |
281 |
Q |
| |
|
||||||||||| | ||||||||||| |
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|
| T |
14945063 |
ataccatcaccatggtagataaatct |
14945038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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