View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2835_low_13 (Length: 426)
Name: NF2835_low_13
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 103 - 417
Target Start/End: Original strand, 49038065 - 49038379
Alignment:
| Q |
103 |
agtgtcaaaggaatgtttctgcatttggggtgtactccttttctaaagttgaannnnnnnncactataaattaatattccacatcattttcatttgatgt |
202 |
Q |
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| T |
49038065 |
agtgtcaaaggaatgtttctgcatttggggtgtactccttttctaaagttgaattttttttcactataaattaatattccacatcattttcatttgatgt |
49038164 |
T |
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| Q |
203 |
ttgtgagtttcgattattctatttatctatctattctttaattggaactaggaaattctgcacgaagataaaagtccctaatttataagcacgcaaaaat |
302 |
Q |
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| T |
49038165 |
ttgtgagtttcgattattctatttatttatctattctttaattggaactaggaaattctgcacgaagataaaagtccctaatttataagcacgcaaaaat |
49038264 |
T |
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| Q |
303 |
aaaattttgaatttttctacatatgtttgctgacatgttattttgannnnnnnnccttctatatggtttttcattttcagaaatacgaaggaactttact |
402 |
Q |
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| T |
49038265 |
aaaattttgaatttttctacatatgtttgctgacatgttattttgttttttttcccttttatatggtttttcattttcagaaatacgaaggaactttact |
49038364 |
T |
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| Q |
403 |
tgacatagagaatta |
417 |
Q |
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| T |
49038365 |
tgacatagagaatta |
49038379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 49037979 - 49038011
Alignment:
| Q |
16 |
tattgttcccttttttccatctgggtccgtcta |
48 |
Q |
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| T |
49037979 |
tattgttcccttttttccatctgggtccgtcta |
49038011 |
T |
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