View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2835_low_15 (Length: 363)
Name: NF2835_low_15
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 13032032 - 13032381
Alignment:
| Q |
1 |
aatgaagaaaaaatattgaacagtttcggtcaattaacaaattttatatgagaaggaaatttgatgcaaaatcacatacataataattttatggatacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13032032 |
aatgaagaaaaaatattgaacagtttcggtcaattaacaaattttatatgagaaggaaatttgatgcaaaatcacatacataataattttatggatacac |
13032131 |
T |
|
| Q |
101 |
cacgtcaacacaaagatcacaaaacataataatgaaaaaatccaattgttaatatcatcgtatcaagaaagataacaaaaaatcaagaatcaatttccta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13032132 |
cacgtcaacacaaagatcacaaaacataataatgaaaaaatccaattgttaatatcatcgtatcaagaaagataataaaaaatcaagaatcaatttccta |
13032231 |
T |
|
| Q |
201 |
aaaaatataatttcaaactgatactcgtatgttacgagagagtagaaattcaaattaaaaaagtgaggatttttcgagagttaatcaaacaaataaaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13032232 |
aaaaatataatttcaaactgatactcgtatgttacgagagagtagaaattcaaattaaaaaagtgaggatttttcgagagttaatcaaacaaataaaaat |
13032331 |
T |
|
| Q |
301 |
ttaatcc-nnnnnnnnnacgttgaatttagtcaaaataatgaaatgcatg |
349 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13032332 |
ttaatcctttttttttcacgttgaatttagtcaaaataatgaaatgcatg |
13032381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 7418782 - 7418637
Alignment:
| Q |
4 |
gaagaaaaaatattgaacagtttcggtcaattaacaaattttatatgagaaggaaatttgatgcaaaatcacatacataataattttatggataca--cc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| |||||||||||||||||||||| || |
|
|
| T |
7418782 |
gaagaaaaaatattgaacagtttcggtcaattaacaaattttatacgaggaggaaatttgatccaaaatcacacacataataattttatggatacacccc |
7418683 |
T |
|
| Q |
102 |
acgtcaacacaaagatcacaaaacataataatgaaaaaatccaatt |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7418682 |
acgtcaacacaaagatcacaaaacataatagtgaaaaaatccaatt |
7418637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 139 - 276
Target Start/End: Complemental strand, 7418622 - 7418482
Alignment:
| Q |
139 |
aatccaattgttaatatcatcgtatcaagaaagataacaaaaaatcaagaatcaatttcctaaaaaa---tataatttcaaactgatactcgtatgttac |
235 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||| |||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||| || |
|
|
| T |
7418622 |
aatccaactgttaatatcatcgtatcaagaaatataataaaaaatcaagagtcaatttcctaagaaaaattataatttcaaacagatactcgtatgtcac |
7418523 |
T |
|
| Q |
236 |
gagagagtagaaattcaaattaaaaaagtgaggatttttcg |
276 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
7418522 |
gagagggtaaaaattcaaactaaaaaagtgaggaattttcg |
7418482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University