View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2835_low_18 (Length: 335)
Name: NF2835_low_18
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_low_18 |
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| [»] scaffold0021 (2 HSPs) |
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| [»] scaffold0049 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 15328790 - 15328702
Alignment:
| Q |
12 |
agaagaggtaaattatgaaccctgttcatcttgtgagaaaactgaatatctttttgacaatctttttcatagctcacagattcttgaac |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15328790 |
agaagaggtaaattatgaaccctgctcatcttgtgagaaaactgaatatctttttgacaatctttttcatagctcacagattcttgaac |
15328702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 18709969 - 18710057
Alignment:
| Q |
12 |
agaagaggtaaattatgaaccctgttcatcttgtgagaaaactgaatatctttttgacaatctttttcatagctcacagattcttgaac |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18709969 |
agaagaggtaaattatgaaccctgctcatcttgtgagaaaactgaatatctttttgacaatctttttcatagctcacagattcttgaac |
18710057 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 15328530 - 15328473
Alignment:
| Q |
272 |
atattattaaatttgtgaaatctactgaaacttttcaaaatatcataggagttcaaaa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15328530 |
atattattaaatttgtgaaatctactgaaacttttcaaaatatcataggagttcaaaa |
15328473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 18710229 - 18710286
Alignment:
| Q |
272 |
atattattaaatttgtgaaatctactgaaacttttcaaaatatcataggagttcaaaa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18710229 |
atattattaaatttgtgaaatctactgaaacttttcaaaatatcataggagttcaaaa |
18710286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 45497238 - 45497150
Alignment:
| Q |
12 |
agaagaggtaaattatgaaccctgttcatcttgtgagaaaactgaatatctttttgacaatctttttcatagctcacagattcttgaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45497238 |
agaagaggtaaattatgaaccctgttcatcttgtgaaaaaactgaacatctttttgacaatctttttcatagctcacagattcttgaac |
45497150 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 45496978 - 45496919
Alignment:
| Q |
272 |
atattattaaatttgtgaaatctactgaaacttttcaaaatatcataggagttcaaaaga |
331 |
Q |
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|||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
45496978 |
atattattaaatttgtaaaatctactgaaacctttcagaatatcataggagttcaaaaga |
45496919 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 14934281 - 14934369
Alignment:
| Q |
12 |
agaagaggtaaattatgaaccctgttcatcttgtgagaaaactgaatatctttttgacaatctttttcatagctcacagattcttgaac |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14934281 |
agaagaggtaaattatgaaccctgttcatcttgtgaaaaaactgaacatctttttgacaatctttttcatagctcacagattcttgaac |
14934369 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 272 - 331
Target Start/End: Original strand, 14934541 - 14934600
Alignment:
| Q |
272 |
atattattaaatttgtgaaatctactgaaacttttcaaaatatcataggagttcaaaaga |
331 |
Q |
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|||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
14934541 |
atattattaaatttgtaaaatctactgaaacctttcagaatatcataggagttcaaaaga |
14934600 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 27749015 - 27748929
Alignment:
| Q |
14 |
aagaggtaaattatgaaccctgttcatcttgtgagaaaactgaatatctttttgacaatctttttcatagctcacagattcttgaac |
100 |
Q |
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|
||||||||||| |||||| || ||||| ||||| |||||||||||||| ||||| ||||||||||||||||| || |||||||||| |
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| T |
27749015 |
aagaggtaaatactgaaccttgctcatcatgtgaaaaaactgaatatctgtttgataatctttttcatagctctcaaattcttgaac |
27748929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 11375785 - 11375869
Alignment:
| Q |
14 |
aagaggtaaattatgaaccctgttcatcttgtgagaaaactgaatatctttttgacaatctttttcatagctcacagattcttga |
98 |
Q |
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|||||| |||| |||||| || ||||||||||| |||||||||||||||||||| |||||||||||||| || || |||||||| |
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| T |
11375785 |
aagaggcaaatactgaaccttgctcatcttgtgaaaaaactgaatatctttttgataatctttttcatagttctcaaattcttga |
11375869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 322
Target Start/End: Complemental strand, 27748749 - 27748710
Alignment:
| Q |
283 |
tttgtgaaatctactgaaacttttcaaaatatcataggag |
322 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |
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| T |
27748749 |
tttgtcaaatctactgaaacttttcaaaatatcataggag |
27748710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 165253 - 165338
Alignment:
| Q |
14 |
aagaggtaaattatgaaccctgttcatcttgtgagaaaactgaatatctttttgacaatctttttcatagctcacagattcttgaa |
99 |
Q |
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||||||||||| |||||| || ||||| ||||| |||||||||||||||||||| ||||||||||||||||| || ||| ||||| |
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| T |
165253 |
aagaggtaaatactgaaccttgctcatcctgtgaaaaaactgaatatctttttgataatctttttcatagctctcaaattattgaa |
165338 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 322
Target Start/End: Original strand, 165519 - 165558
Alignment:
| Q |
283 |
tttgtgaaatctactgaaacttttcaaaatatcataggag |
322 |
Q |
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||||| ||||||||||||||||||||||| |||||||||| |
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| T |
165519 |
tttgttaaatctactgaaacttttcaaaagatcataggag |
165558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 16981 - 17067
Alignment:
| Q |
14 |
aagaggtaaattatgaaccctgttcatcttgtgagaaaactgaatatctttttgacaatctttttcatagctcacagattcttgaac |
100 |
Q |
| |
|
||||||||||| |||||| || ||||| ||||| |||||||||||||| ||||| ||||| ||||||||||| || |||||||||| |
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| T |
16981 |
aagaggtaaatactgaaccttgctcatcatgtgaaaaaactgaatatctgtttgataatctctttcatagctctcaaattcttgaac |
17067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 322
Target Start/End: Original strand, 17247 - 17286
Alignment:
| Q |
283 |
tttgtgaaatctactgaaacttttcaaaatatcataggag |
322 |
Q |
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||||| ||||||||||||||||||||||| |||||||||| |
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| T |
17247 |
tttgtcaaatctactgaaacttttcaaaacatcataggag |
17286 |
T |
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