View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2835_low_19 (Length: 330)
Name: NF2835_low_19
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 12155865 - 12155545
Alignment:
| Q |
1 |
aatatcatttctaaaaatattatgtaaattcnnnnnnnatgtaggcttttcacgaaattgatgacaaactattatcatttttaccatgtcataatatgaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
12155865 |
aatatcatttctaaaaatattatctaaattctttttctatgtaggcttttcatgaaattgatgacaaactattatcatttttaccatgccacaatatgaa |
12155766 |
T |
|
| Q |
101 |
gtgtggagaaatgataagagtataaatttgacatagtggaagataacgtattataaggtttgttgttgttacgatggcaaaatccatattacttttagaa |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
12155765 |
gtgtggagaaatgataagagcataaatttgacatagtggaagataacgtattataaggatggttgtttttacgatgacaaaatccatattacttttagaa |
12155666 |
T |
|
| Q |
201 |
ttcttcatttccatgtttgta-aacccagagattttatgtcttcatttgtgttgatcctatgtaggcatcagaaccggcaagaacgtcttttatgttga- |
298 |
Q |
| |
|
||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| || || || |
|
|
| T |
12155665 |
ttcttcatttccatgttcgtataacttagagattttgtgtcttcatttgtgttgatcctatgtaggcatcaaaaccggcaagaacgtcttctacgtcgat |
12155566 |
T |
|
| Q |
299 |
ttcttccgtgtgtgaagtttc |
319 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
12155565 |
ttcttccgtgtttgaagtttc |
12155545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 43860719 - 43860841
Alignment:
| Q |
95 |
tatgaagtgtggagaaatgataagagtataaatttgacatagtggaagataacgtattataaggtttgttgttgttacgatggcaaaatccatattactt |
194 |
Q |
| |
|
||||||||||||| | |||||| ||| |||||||| ||| ||| |||||||| ||||||||| |||||||||||||| |||||||||||||||||| || |
|
|
| T |
43860719 |
tatgaagtgtggaaatatgatatgagcataaatttaacagagtagaagataaagtattataaagtttgttgttgttataatggcaaaatccatattattt |
43860818 |
T |
|
| Q |
195 |
ttagaattcttcatttccatgtt |
217 |
Q |
| |
|
|||||||||||| ||| |||||| |
|
|
| T |
43860819 |
ttagaattcttccttttcatgtt |
43860841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 319
Target Start/End: Original strand, 12158161 - 12158265
Alignment:
| Q |
216 |
tttgtaaacccagagattttatgtcttcatttgtgttgatcctatgtaggcatcagaaccggcaagaacgtcttttatgttgatt-cttccgtgtgtgaa |
314 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||| ||||| |||| ||||||||| | || |||| ||||||| |||| || || |||| |||||||||||||| |
|
|
| T |
12158161 |
tttgtaaacctagatattttgtgtcttcatctgtgtggatcatatgtaggcgttaggaccgacaagaacatcttctacgtcgatttcttccgtgtgtgaa |
12158260 |
T |
|
| Q |
315 |
gtttc |
319 |
Q |
| |
|
||||| |
|
|
| T |
12158261 |
gtttc |
12158265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University