View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2835_low_2 (Length: 588)
Name: NF2835_low_2
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 452 - 570
Target Start/End: Original strand, 36865425 - 36865555
Alignment:
| Q |
452 |
caatatatatgtatgtgatacatcattcaataaaaaatataggatgtgatac-----------atcat-cattaaaaacatagctcttagtacacttatt |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36865425 |
caatatatatgtatgtgatacatcattcaataaaaaatataggatgtgatacgtgtgtgatacatcattcattaaaaacatagctcttagtacacttatt |
36865524 |
T |
|
| Q |
540 |
tactacagacatgggcctaaagaggagtaag |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
36865525 |
tactacagacatgggcctaaagaggagtaag |
36865555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 36865317 - 36865408
Alignment:
| Q |
10 |
catcatcagtaatctccaaaataggttggatatacgtggcatcctttggttcagaaatttcatctgcattcggttgtgaagaatttggctaa |
101 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36865317 |
catcagcagtaatctccaaaataggttggatatacgtggcatcctttggttcagaaatttcatctgcattcggctgtgaagaatttggctaa |
36865408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University