View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2835_low_23 (Length: 277)

Name: NF2835_low_23
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2835_low_23
NF2835_low_23
[»] chr5 (13 HSPs)
chr5 (24-267)||(15327784-15328027)
chr5 (24-267)||(18710732-18710975)
chr5 (24-253)||(725505-725734)
chr5 (46-267)||(22454860-22455081)
chr5 (28-267)||(5603334-5603573)
chr5 (114-236)||(20951029-20951151)
chr5 (135-266)||(30451712-30451843)
chr5 (112-224)||(24297668-24297780)
chr5 (114-224)||(18382920-18383030)
chr5 (114-224)||(26199376-26199486)
chr5 (114-224)||(27415328-27415438)
chr5 (114-224)||(33942500-33942610)
chr5 (163-266)||(24415364-24415467)
[»] chr8 (10 HSPs)
chr8 (24-267)||(45496235-45496478)
chr8 (46-267)||(33598918-33599139)
chr8 (46-224)||(12918393-12918571)
chr8 (163-266)||(20737848-20737951)
chr8 (114-224)||(14888740-14888850)
chr8 (112-266)||(18235464-18235618)
chr8 (112-266)||(18244915-18245069)
chr8 (114-224)||(22833918-22834028)
chr8 (163-266)||(20724950-20725053)
chr8 (146-224)||(21210053-21210131)
[»] chr4 (7 HSPs)
chr4 (24-267)||(14935041-14935284)
chr4 (24-253)||(114898-115127)
chr4 (114-224)||(16268281-16268391)
chr4 (163-266)||(54696924-54697027)
chr4 (115-224)||(7843510-7843619)
chr4 (163-266)||(26815026-26815129)
chr4 (146-224)||(6695398-6695476)
[»] chr3 (10 HSPs)
chr3 (31-266)||(25508378-25508613)
chr3 (24-253)||(19687547-19687776)
chr3 (39-254)||(5147787-5148002)
chr3 (28-267)||(48981437-48981676)
chr3 (114-224)||(6425488-6425598)
chr3 (171-236)||(40090815-40090880)
chr3 (113-224)||(8976026-8976137)
chr3 (163-266)||(28361830-28361933)
chr3 (146-224)||(16404789-16404867)
chr3 (171-220)||(2158033-2158082)
[»] chr6 (12 HSPs)
chr6 (24-253)||(8997596-8997825)
chr6 (31-253)||(11376546-11376768)
chr6 (31-267)||(27748018-27748254)
chr6 (24-253)||(9006779-9006994)
chr6 (118-198)||(17945905-17945984)
chr6 (114-224)||(16901126-16901236)
chr6 (114-224)||(18163245-18163355)
chr6 (114-224)||(24929216-24929326)
chr6 (114-224)||(29562600-29562710)
chr6 (114-224)||(31359999-31360109)
chr6 (146-266)||(25897232-25897352)
chr6 (221-267)||(17945853-17945899)
[»] scaffold0096 (1 HSPs)
scaffold0096 (24-253)||(51765-51994)
[»] chr7 (13 HSPs)
chr7 (24-253)||(609482-609711)
chr7 (114-224)||(5388966-5389076)
chr7 (46-220)||(14641801-14641975)
chr7 (114-224)||(26306736-26306846)
chr7 (114-224)||(26359972-26360082)
chr7 (114-224)||(32101560-32101670)
chr7 (114-224)||(44900479-44900589)
chr7 (114-224)||(46500294-46500404)
chr7 (163-266)||(15178271-15178374)
chr7 (113-224)||(16139234-16139345)
chr7 (146-224)||(6537664-6537742)
chr7 (114-224)||(8504229-8504339)
chr7 (114-224)||(9542291-9542401)
[»] scaffold0028 (2 HSPs)
scaffold0028 (24-253)||(84572-84801)
scaffold0028 (163-266)||(101438-101541)
[»] scaffold0021 (1 HSPs)
scaffold0021 (31-267)||(166013-166249)
[»] chr2 (7 HSPs)
chr2 (28-253)||(24991803-24992028)
chr2 (28-267)||(1793719-1793958)
chr2 (114-236)||(27167031-27167153)
chr2 (114-230)||(22905319-22905435)
chr2 (114-224)||(18654398-18654508)
chr2 (114-224)||(45017530-45017640)
chr2 (146-224)||(9510847-9510925)
[»] scaffold0049 (2 HSPs)
scaffold0049 (31-267)||(17725-17961)
scaffold0049 (114-239)||(85578-85703)
[»] scaffold0500 (2 HSPs)
scaffold0500 (24-163)||(8783-8922)
scaffold0500 (160-253)||(6602-6695)
[»] scaffold0313 (1 HSPs)
scaffold0313 (114-236)||(12725-12847)
[»] scaffold0003 (1 HSPs)
scaffold0003 (114-236)||(148180-148302)
[»] chr1 (2 HSPs)
chr1 (46-267)||(14279079-14279300)
chr1 (114-224)||(16158063-16158173)
[»] scaffold0141 (1 HSPs)
scaffold0141 (114-236)||(29112-29234)
[»] scaffold0014 (1 HSPs)
scaffold0014 (114-236)||(149843-149965)
[»] scaffold0773 (1 HSPs)
scaffold0773 (46-224)||(5845-6023)
[»] scaffold0058 (1 HSPs)
scaffold0058 (114-224)||(51634-51744)
[»] scaffold0010 (1 HSPs)
scaffold0010 (146-266)||(259607-259727)
[»] scaffold0611 (1 HSPs)
scaffold0611 (114-224)||(1224-1334)
[»] scaffold0254 (1 HSPs)
scaffold0254 (146-224)||(4650-4728)
[»] scaffold0163 (1 HSPs)
scaffold0163 (171-220)||(18683-18732)
[»] scaffold0142 (1 HSPs)
scaffold0142 (114-223)||(33952-34061)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 24 - 267
Target Start/End: Original strand, 15327784 - 15328027
Alignment:
Q  24 aaagcatgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttact 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15327784 aaagcatgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttact 15327883  T
Q  124 tcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacatttt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15327884 tcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacatttt 15327983  T
Q  224 caatctttgcagaatttatcttaccaataattcccttacctttg 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15327984 caatctttgcagaatttatcttaccaataattcccttacctttg 15328027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 24 - 267
Target Start/End: Complemental strand, 18710975 - 18710732
Alignment:
Q  24 aaagcatgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttact 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18710975 aaagcatgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcccgaagatacttgtcttact 18710876  T
Q  124 tcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacatttt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18710875 tcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacatttt 18710776  T
Q  224 caatctttgcagaatttatcttaccaataattcccttacctttg 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  18710775 caatctttgcagaatttatcttaccaataattcccttacctttg 18710732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 725505 - 725734
Alignment:
Q  24 aaagcatgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttact 123  Q
    |||||||||||| ||||||||||||||||||||||     || |||||||| ||||  ||||||||||||| ||||||||||||||||| |||||| |||    
T  725505 aaagcatgattcgacagggagttcatctaagtatagagtgtagacatttttatttcttgatccggtaaataggatttttcctgaagatatttgtctgact 725604  T
Q  124 tcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacatttt 223  Q
    ||||||||||||||||||||| | ||||||| ||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  725605 tcgcatgtgtgaggtttgaatattacttcaaaaccactatcacacaattgactgatgctaattaggttatgttttaatccttctacatattgaacatttt 725704  T
Q  224 caatctttgcagaatttatcttaccaataa 253  Q
    |||| || | ||||||||||||||||||||    
T  725705 caattttagtagaatttatcttaccaataa 725734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 46 - 267
Target Start/End: Original strand, 22454860 - 22455081
Alignment:
Q  46 tcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttacttcgcatgtgtgaggtttgaatg 145  Q
    ||||||||  |||| ||||||| |||||| |||||||| || ||||| ||||| ||||||| ||| |||||| | ||||| ||| |||  ||||| ||      
T  22454860 tcatctaaaaataaaacataaagatttttctttcgagagccagtaaaaaagatgtttcctgtagaaacttgtttgacttcacatatgttgggtttaaaga 22454959  T
Q  146 taacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctttgcagaatttatctt 245  Q
    | ||||||| ||| |||||||| |||||||| ||||| | || |||||||||||||||||| ||||||||||| | ||| || || ||||||||  | ||    
T  22454960 ttacttcaaaaccactgtcacataattgacttatgcttagtaggttgtgttttaatccttcaacatattgaacgtcttctattttagcagaattattttt 22455059  T
Q  246 accaataattcccttacctttg 267  Q
    ||||||||| |  |||||||||    
T  22455060 accaataatacatttacctttg 22455081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 267
Target Start/End: Complemental strand, 5603573 - 5603334
Alignment:
Q  28 catgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttacttcgc 127  Q
    ||||||||| | || || ||||||| |||||| ||||| |  |||||  ||| ||| || ||||| || |||||||| || |||  |||| ||||||| |    
T  5603573 catgattcagctggaagatcatctaggtataaaacatataagttttttattctagaaccagtaaagaaaatttttcccgaggatgtttgttttacttcac 5603474  T
Q  128 atgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaat 227  Q
    || ||| |||||| ||  | ||||||| ||| || ||||| |||||||| ||||| |  |  ||||||||||| ||||| ||||||||||||||||| ||    
T  5603473 atatgttaggtttaaaattgacttcaaaaccactatcacataattgacttatgcttagcagattgtgttttaaaccttcaacatattgaacattttcgat 5603374  T
Q  228 ctttgcagaatttatcttaccaataattcccttacctttg 267  Q
     || |||| |||| ||||||||||||| || |||||||||    
T  5603373 tttagcagtatttttcttaccaataatacctttacctttg 5603334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 114 - 236
Target Start/End: Complemental strand, 20951151 - 20951029
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||||| ||| ||| ||| |||||| ||| |||||||||  || || |||||||||||||| ||||||| ||  |||||||| || |||||||||||     
T  20951151 ttgtcttatttcacatatgttaggtttaaatataacttcaaatccactatcacacaattgacttatgctaagtagattgtgtttcaaaccttctacatac 20951052  T
Q  214 tgaacattttcaatctttgcaga 236  Q
    ||||||||||| ||||| |||||    
T  20951051 tgaacattttctatcttagcaga 20951029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 266
Target Start/End: Original strand, 30451712 - 30451843
Alignment:
Q  135 aggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctttgca 234  Q
    |||||||||  |||||||||  || || ||||| |||||||| ||||| | ||  ||||||||||| ||||| |||||||||||||  ||||| ||||||    
T  30451712 aggtttgaaaataacttcaaagccactatcacataattgacttatgcttagtagattgtgttttaaaccttcaacatattgaacatcctcaatttttgca 30451811  T
Q  235 gaatttatcttaccaataattcccttaccttt 266  Q
    || | | | ||||||||||| || ||||||||    
T  30451812 gagtcttttttaccaataatacctttaccttt 30451843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 24297668 - 24297780
Alignment:
Q  112 acttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacat 211  Q
    |||||| | ||||| ||| ||| |||||| ||  |||||||||  || |||||||| |||||||||||||| | ||  || |||||||| ||||| ||||    
T  24297668 acttgtttgacttcacatatgttaggtttaaaaataacttcaaagccactgtcacataattgactgatgcttagtagattatgttttaaaccttcaacat 24297767  T
Q  212 attgaacattttc 224  Q
    |||||||||||||    
T  24297768 attgaacattttc 24297780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 18383030 - 18382920
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  18383030 ttgtctgacttcacatatgttaggtttaaagataacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 18382931  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  18382930 tgaacattttc 18382920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 26199376 - 26199486
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  26199376 ttgtctgacttcacatatgttaggtttaaagataacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 26199475  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  26199476 tgaacattttc 26199486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 27415438 - 27415328
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  27415438 ttgtctgacttcacatatgttaggtttaaagataacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 27415339  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  27415338 tgaacattttc 27415328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 33942610 - 33942500
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  33942610 ttgtctgacttcacatatgttaggtttaaagataacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 33942511  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  33942510 tgaacattttc 33942500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 266
Target Start/End: Complemental strand, 24415467 - 24415364
Alignment:
Q  163 tcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctttgcagaatttatcttaccaataattcccttac 262  Q
    ||||| |||||||| ||||| | ||  ||||||||||| ||||| |||||||||||||  ||||| |||||||| | | | |||||||| || || ||||    
T  24415467 tcacataattgacttatgcttagtagattgtgttttaaaccttcaacatattgaacatcctcaatttttgcagagtcttttttaccaatgatacctttac 24415368  T
Q  263 cttt 266  Q
    ||||    
T  24415367 cttt 24415364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 24 - 267
Target Start/End: Original strand, 45496235 - 45496478
Alignment:
Q  24 aaagcatgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttact 123  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45496235 aaagcatgattcaacagggagttcatctaagtataaaacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttact 45496334  T
Q  124 tcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacatttt 223  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  45496335 tcgcatgtgtgaggtttgaaggtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaaaccttctacatattgaacatttt 45496434  T
Q  224 caatctttgcagaatttatcttaccaataattcccttacctttg 267  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  45496435 caatttttgcagaatttatcttaccaataattcccttacctttg 45496478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 267
Target Start/End: Original strand, 33598918 - 33599139
Alignment:
Q  46 tcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttacttcgcatgtgtgaggtttgaatg 145  Q
    ||||||||  |||| ||||||| |||||| |||||||| || || || ||||| ||||| | ||| |||||| | | ||| ||| |||  ||||| ||      
T  33598918 tcatctaaaaataatacataaagatttttctttcgagagccagtgaaaaagatgtttcccgtagaaacttgtttgatttcacatatgttgggtttaaaga 33599017  T
Q  146 taacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctttgcagaatttatctt 245  Q
    | ||||||| ||| |||||||| |||||||| ||||| | || |||||||||||||||||| ||||||||||| | ||| || || ||||| ||  | ||    
T  33599018 ttacttcaaaaccactgtcacataattgacttatgcttagtaggttgtgttttaatccttcaacatattgaacgtcttctattttagcagagttgttttt 33599117  T
Q  246 accaataattcccttacctttg 267  Q
    ||||||||| || |||||||||    
T  33599118 accaataatacctttacctttg 33599139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 12918571 - 12918393
Alignment:
Q  46 tcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttacttcgcatgtgtgaggtttgaatg 145  Q
    ||||||||| |||| ||||||| |||||| |||| ||| || || || ||  ||||||| | ||| |||||| | ||||| ||| |||  ||||| ||      
T  12918571 tcatctaagaataaaacataaagatttttctttctagagccagtgaagaaattttttccagtagagacttgtttgacttcacatatgttgggtttaaaga 12918472  T
Q  146 taacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttc 224  Q
    | ||||||| ||| ||||| || |||||||| ||||| | || ||| |||||||||||||| |||||||||||||||||    
T  12918471 ttacttcaaaaccactgtcgcataattgacttatgcttagtaggttatgttttaatccttcaacatattgaacattttc 12918393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 266
Target Start/End: Complemental strand, 20737951 - 20737848
Alignment:
Q  163 tcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctttgcagaatttatcttaccaataattcccttac 262  Q
    ||||| |||||||| ||||| | ||  ||||||||||| ||||| |||||||||||||  ||||| |||||||| | | ||||||||||||| || ||||    
T  20737951 tcacataattgacttatgcttagtagattgtgttttaaaccttcaacatattgaacatcctcaatttttgcagagtctttcttaccaataatacctttac 20737852  T
Q  263 cttt 266  Q
    ||||    
T  20737851 cttt 20737848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 14888740 - 14888850
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||||||||| ||| ||| |||||| ||   ||||||||  || || |||||||||||||| ||||||| ||  || |||||||| |||||||||||     
T  14888740 ttgtcttacttcacatatgttaggtttaaagacaacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttctacatac 14888839  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  14888840 tgaacattttc 14888850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 266
Target Start/End: Complemental strand, 18235618 - 18235464
Alignment:
Q  112 acttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacat 211  Q
    |||||| | ||||| ||| ||| |||||| ||  |||||||||  || |||||||| |||||||||||||| | ||  || |||||||| ||||| ||||    
T  18235618 acttgtttgacttcacatatgttaggtttaaaaataacttcaaagccactgtcacataattgactgatgcttagtagattatgttttaaaccttcaacat 18235519  T
Q  212 attgaacattttcaatctttgcagaatttatcttaccaataattcccttaccttt 266  Q
    ||||||||||||| || || ||||| ||  ||||||| ||| | || ||||||||    
T  18235518 attgaacattttctattttagcagagttattcttaccgatagtacctttaccttt 18235464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 266
Target Start/End: Complemental strand, 18245069 - 18244915
Alignment:
Q  112 acttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacat 211  Q
    |||||| | ||||| ||| ||| |||||| ||  |||||||||  || |||||||| |||||||||||||| | ||  || |||||||| ||||| ||||    
T  18245069 acttgtttgacttcacatatgttaggtttaaaaataacttcaaagccactgtcacataattgactgatgcttagtagattatgttttaaaccttcaacat 18244970  T
Q  212 attgaacattttcaatctttgcagaatttatcttaccaataattcccttaccttt 266  Q
    ||||||||||||| || || ||||| ||  ||||||| ||| | || ||||||||    
T  18244969 attgaacattttctattttagcagagttattcttaccgatagtacctttaccttt 18244915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 22834028 - 22833918
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||||||||| ||| ||| |||||| ||   ||||||||  || || |||||||||||||| ||||||| ||  || |||||| | |||||||||||     
T  22834028 ttgtcttacttcacatatgttaggtttaaagacaacttcaaatccactatcacacaattgacttatgctaagtagattatgttttgaaccttctacatac 22833929  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  22833928 tgaacattttc 22833918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 266
Target Start/End: Complemental strand, 20725053 - 20724950
Alignment:
Q  163 tcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctttgcagaatttatcttaccaataattcccttac 262  Q
    ||||| |||||||| ||||| | ||  ||||||||||| ||||| ||||||||||| |  | ||| |||||||| | | ||||||||||||| || ||||    
T  20725053 tcacataattgacttatgcttagtagattgtgttttaaaccttcaacatattgaacttccttaatttttgcagagtctttcttaccaataatacctttac 20724954  T
Q  263 cttt 266  Q
    ||||    
T  20724953 cttt 20724950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 21210053 - 21210131
Alignment:
Q  146 taacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttc 224  Q
    |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| ||||| |||||||||||    
T  21210053 taacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatactgaacattttc 21210131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 24 - 267
Target Start/End: Complemental strand, 14935284 - 14935041
Alignment:
Q  24 aaagcatgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttact 123  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14935284 aaagcatgattcaacagggagttcatctaagtataaaacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttact 14935185  T
Q  124 tcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacatttt 223  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14935184 tcgcatgtgtgaggtttgaaggtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaaaccttctacatattgaacatttt 14935085  T
Q  224 caatctttgcagaatttatcttaccaataattcccttacctttg 267  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  14935084 caatttttgcagaatttatcttaccaataattcccttacctttg 14935041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 115127 - 114898
Alignment:
Q  24 aaagcatgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttact 123  Q
    |||||||||||| ||||||||||||||||||||||     || |||||||| ||||  ||||||| ||||| ||||||||||||||||| |||||| |||    
T  115127 aaagcatgattcgacagggagttcatctaagtatagagtgtagacatttttatttcttgatccggaaaataggatttttcctgaagatatttgtctgact 115028  T
Q  124 tcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacatttt 223  Q
    || |||||||||||||||||| | ||||||| ||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  115027 tcacatgtgtgaggtttgaatattacttcaaaaccactatcacacaattgactgatgctaattaggttatgttttaatccttctacatattgaacatttt 114928  T
Q  224 caatctttgcagaatttatcttaccaataa 253  Q
    |||| || ||||||||||||||||||||||    
T  114927 caattttagcagaatttatcttaccaataa 114898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 16268391 - 16268281
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||||||||| ||| ||| |||||| |||  ||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  16268391 ttgtcttacttcacatatgttaggtttaaatacaacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 16268292  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  16268291 tgaacattttc 16268281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 266
Target Start/End: Original strand, 54696924 - 54697027
Alignment:
Q  163 tcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctttgcagaatttatcttaccaataattcccttac 262  Q
    ||||| |||||||| ||||| | ||  ||||||||||| ||||| |||||||||||||  ||||| |||||||| | | | ||||||||||| || ||||    
T  54696924 tcacataattgacttatgcttagtagattgtgttttaaaccttcaacatattgaacatcctcaatttttgcagagtcttttttaccaataatacctttac 54697023  T
Q  263 cttt 266  Q
    ||||    
T  54697024 cttt 54697027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 7843510 - 7843619
Alignment:
Q  115 tgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatatt 214  Q
    ||||||||||| ||| ||| |||||| ||   ||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| ||||| |    
T  7843510 tgtcttacttcacatatgttaggtttaaagacaacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatact 7843609  T
Q  215 gaacattttc 224  Q
    ||||||||||    
T  7843610 gaacattttc 7843619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 266
Target Start/End: Complemental strand, 26815129 - 26815026
Alignment:
Q  163 tcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctttgcagaatttatcttaccaataattcccttac 262  Q
    ||||| |||||||| ||||| | ||  ||||||||||| ||||| |||||||||||||  ||||| |||||||| | | | |||||||| || || ||||    
T  26815129 tcacataattgacttatgcttagtagattgtgttttaaaccttcaacatattgaacatcctcaatttttgcagagtcttttttaccaatgatacctttac 26815030  T
Q  263 cttt 266  Q
    ||||    
T  26815029 cttt 26815026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 6695476 - 6695398
Alignment:
Q  146 taacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttc 224  Q
    |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| ||||| |||||||||||    
T  6695476 taacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatactgaacattttc 6695398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 31 - 266
Target Start/End: Original strand, 25508378 - 25508613
Alignment:
Q  31 gattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttacttcgcatg 130  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25508378 gattcaacagggagttcatctaagtataaaacataaacatttttatttcttgatccggtaaataagatttttcctgaagattcttgtcttacttcgcatg 25508477  T
Q  131 tgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctt 230  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||||||||| ||    
T  25508478 tgtgaggtttgaatgtcacttcaaaaccactgtcacacaattgactgatgatgatcaagttgtgttttaaaccttctacatattgaacattttcaatttt 25508577  T
Q  231 tgcagaatttatcttaccaataattcccttaccttt 266  Q
    |||||||||||||||||||||||  || ||||||||    
T  25508578 tgcagaatttatcttaccaataacacctttaccttt 25508613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 19687776 - 19687547
Alignment:
Q  24 aaagcatgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttact 123  Q
    |||||||||||| |||| |||||||||||||||||     || |||||||| ||||  ||||||||||||| ||||||||||||||||| ||||||||||    
T  19687776 aaagcatgattcgacagagagttcatctaagtatagagtgtagacatttttatttcttgatccggtaaataggatttttcctgaagatatttgtcttact 19687677  T
Q  124 tcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacatttt 223  Q
    ||||||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  19687676 tcgcatgtgtgaggtttgaatattacttcaaaaccactgtcacacaattgactgatgctaattaggttatgttttaatccttctacatattgaacatttt 19687577  T
Q  224 caatctttgcagaatttatcttaccaataa 253  Q
    |||| || ||||||||||||||||||||||    
T  19687576 caattttagcagaatttatcttaccaataa 19687547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 39 - 254
Target Start/End: Original strand, 5147787 - 5148002
Alignment:
Q  39 agggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttacttcgcatgtgtgaggt 138  Q
    ||||||||||||||||||||| |||||||||||||||||    ||||||||||| ||||| |||||||||||| ||||||||||||| ||||||||||||    
T  5147787 agggagttcatctaagtataaaacataaacatttttgttctttgatccggtaaacaagatatttcctgaagattcttgtcttacttctcatgtgtgaggt 5147886  T
Q  139 ttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctttgcagaat 238  Q
    |||||||| ||||||| ||| || ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||    
T  5147887 ttgaatgttacttcaaaaccactatcacacaattgactgatgctaatcaagttatgttttaaaccttctacatattgaacattttcaatttttgcagaat 5147986  T
Q  239 ttatcttaccaataat 254  Q
    |||| ||| |||||||    
T  5147987 ttattttaacaataat 5148002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 267
Target Start/End: Complemental strand, 48981676 - 48981437
Alignment:
Q  28 catgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttacttcgc 127  Q
    ||||||||| | || || ||||||| |||||| ||||| |  |||||  ||| ||| || ||||| || |||||||| || |||  |||| ||||||| |    
T  48981676 catgattcagctggaagatcatctaggtataaaacatataagttttttattctagaaccagtaaagaaaatttttcccgaggatgtttgttttacttcac 48981577  T
Q  128 atgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaat 227  Q
    || ||| |||||| ||  | ||||||| ||| || ||||| |||||||| ||||| |  |  ||||||||||| ||||| ||||||||||||||||| ||    
T  48981576 atatgttaggtttaaaattgacttcaaaaccactatcacataattgacttatgcttagcagattgtgttttaaaccttcaacatattgaacattttcgat 48981477  T
Q  228 ctttgcagaatttatcttaccaataattcccttacctttg 267  Q
     || |||| |||| ||||||||||||| || |||||||||    
T  48981476 tttagcagtatttttcttaccaataatacctttacctttg 48981437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 6425598 - 6425488
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  6425598 ttgtctgacttcacatatgttaggtttaaagataacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 6425499  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  6425498 tgaacattttc 6425488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 40090815 - 40090880
Alignment:
Q  171 ttgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctttgcaga 236  Q
    |||||||||||| |  ||||| |||||||| |||||||||||||||||||| | |||||| |||||    
T  40090815 ttgactgatgcttagcaagttatgttttaaaccttctacatattgaacattcttaatcttagcaga 40090880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 224
Target Start/End: Complemental strand, 8976137 - 8976026
Alignment:
Q  113 cttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacata 212  Q
    ||||||| ||||| ||| ||| |||||| ||  |||||||||  || || ||||| |||||||| ||||||| ||  || |||||||| ||||| |||||    
T  8976137 cttgtctgacttcacatatgttaggtttaaagataacttcaaatccactatcacataattgacttatgctaagtagattatgttttaaaccttccacata 8976038  T
Q  213 ttgaacattttc 224  Q
     |||||||||||    
T  8976037 ctgaacattttc 8976026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 266
Target Start/End: Original strand, 28361830 - 28361933
Alignment:
Q  163 tcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctttgcagaatttatcttaccaataattcccttac 262  Q
    ||||| |||||||| ||||| | ||  ||||||||||| ||||| |||||||||||||  ||||| |||||||| | | | |||||||| || || ||||    
T  28361830 tcacataattgacttatgcttagtagattgtgttttaaaccttcaacatattgaacatcctcaatttttgcagagtcttttttaccaatgatacctttac 28361929  T
Q  263 cttt 266  Q
    ||||    
T  28361930 cttt 28361933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 16404867 - 16404789
Alignment:
Q  146 taacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttc 224  Q
    |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| ||||| |||||||||||    
T  16404867 taacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatactgaacattttc 16404789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 2158082 - 2158033
Alignment:
Q  171 ttgactgatgctaattaagttgtgttttaatccttctacatattgaacat 220  Q
    |||||||||||| |  ||||| |||||||| |||||||||||||||||||    
T  2158082 ttgactgatgcttagcaagttatgttttaaaccttctacatattgaacat 2158033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 6e-77; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 8997825 - 8997596
Alignment:
Q  24 aaagcatgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttact 123  Q
    |||||||||||| ||||||||||||||||||||||     || |||||||| ||||  ||||||||||||| ||||||||||||||||| |||||| |||    
T  8997825 aaagcatgattcgacagggagttcatctaagtatagagtgtagacatttttatttcttgatccggtaaataggatttttcctgaagatatttgtctgact 8997726  T
Q  124 tcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacatttt 223  Q
    ||||||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  8997725 tcgcatgtgtgaggtttgaatattacttcaaaaccactgtcacacaattgactgatgctaattaggttatgttttaatccttctacatattgaacatttt 8997626  T
Q  224 caatctttgcagaatttatcttaccaataa 253  Q
    |||| || ||||||||||||||||||||||    
T  8997625 caattttagcagaatttatcttaccaataa 8997596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 31 - 253
Target Start/End: Complemental strand, 11376768 - 11376546
Alignment:
Q  31 gattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttacttcgcatg 130  Q
    ||||||||||||||||||||||| ||||| |||||||||||||  ||||  ||||| ||||| |||||||||||||| ||| ||||||| ||||||||||    
T  11376768 gattcaacagggagttcatctaaatataaaacataaacattttaatttcttgatccagtaaacaagatttttcctgaggattcttgtctaacttcgcatg 11376669  T
Q  131 tgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctt 230  Q
    |||||| |||||| || |||||||||||  ||||| | |||||||| ||| | || ||||| |||||||| ||||| ||||||| ||| |||||||| ||    
T  11376668 tgtgagttttgaaagttacttcaagaccattgtcaaataattgacttatgttgatcaagttatgttttaaaccttccacatattaaactttttcaatttt 11376569  T
Q  231 tgcagaatttatcttaccaataa 253  Q
    |||||||||||||||||||||||    
T  11376568 tgcagaatttatcttaccaataa 11376546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 31 - 267
Target Start/End: Original strand, 27748018 - 27748254
Alignment:
Q  31 gattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttacttcgcatg 130  Q
    ||||||| |||||||||||||||  |||| |||||||||||||||||||  ||||||||||| |||||||||||||| ||||||||| | ||||| ||||    
T  27748018 gattcaatagggagttcatctaaaaataaaacataaacatttttgtttcttgatccggtaaacaagatttttcctgaggatacttgtttaacttcacatg 27748117  T
Q  131 tgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctt 230  Q
    | || | ||||||  | ||||||||| |  ||||||| |||||||| ||||| || ||||| |||||||| ||||| |||||||||||||||||||| ||    
T  27748118 tatgggttttgaaaattacttcaagatcattgtcacataattgacttatgctgatcaagttatgttttaaaccttccacatattgaacattttcaatttt 27748217  T
Q  231 tgcagaatttatcttaccaataattcccttacctttg 267  Q
    | |||| ||||||||||||||||  || |||||||||    
T  27748218 ttcagagtttatcttaccaataacacctttacctttg 27748254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 9006994 - 9006779
Alignment:
Q  24 aaagcatgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttact 123  Q
    |||||||||||| |||||||||||||||||||||||    || |||||||| ||||  ||||||||||| | |||||||||||||              |    
T  9006994 aaagcatgattcgacagggagttcatctaagtataaagtgtagacatttttatttcttgatccggtaaaaaggatttttcctgaa--------------t 9006909  T
Q  124 tcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacatttt 223  Q
    ||||||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||||||||    
T  9006908 tcgcatgtgtgaggtttgaatattacttcaaaaccactgtcacacaattgactgatgctaattaggttatgtttcagtccttctacatattgaacatttt 9006809  T
Q  224 caatctttgcagaatttatcttaccaataa 253  Q
    |||| || || |||||||||||||||||||    
T  9006808 caattttagcggaatttatcttaccaataa 9006779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 17945984 - 17945905
Alignment:
Q  118 cttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgtttt 198  Q
    |||||||||||||||||||||||||| || |||| || |||  |||||||||||||| ||||| | || ||||||||||||    
T  17945984 cttacttcgcatgtgtgaggtttgaaggttactttaaaacc-atgtcacacaattgattgatgttgatcaagttgtgtttt 17945905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 16901236 - 16901126
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  16901236 ttgtctgacttcacatatgttaggtttaaaaataacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 16901137  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  16901136 tgaacattttc 16901126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 18163355 - 18163245
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  18163355 ttgtctgacttcacatatgttaggtttaaagataacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 18163256  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  18163255 tgaacattttc 18163245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 24929216 - 24929326
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  24929216 ttgtctgacttcacatatgttaggtttaaagataacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 24929315  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  24929316 tgaacattttc 24929326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 29562710 - 29562600
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||||||||| ||| ||| |||||| ||   ||||||||  || || |||||||||||||| ||||||| ||  || |||||| | |||||||||||     
T  29562710 ttgtcttacttcacatatgttaggtttaaagacaacttcaaatccactatcacacaattgacttatgctaagtagattatgtttttaaccttctacatac 29562611  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  29562610 tgaacattttc 29562600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 31360109 - 31359999
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  31360109 ttgtctgacttcacatatgttaggtttaaagataacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 31360010  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  31360009 tgaacattttc 31359999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 266
Target Start/End: Complemental strand, 25897352 - 25897232
Alignment:
Q  146 taacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctttgcagaatttatctt 245  Q
    |||||||||  || |||||||| |||||| ||||||| | ||  || |||||||| ||||| ||||||||||||||||| || || ||||| ||  ||||    
T  25897352 taacttcaaagccactgtcacataattgaatgatgcttagtagattatgttttaaaccttcaacatattgaacattttctattttagcagagttattctt 25897253  T
Q  246 accaataattcccttaccttt 266  Q
    ||| ||| | || ||||||||    
T  25897252 accgatagtacctttaccttt 25897232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 17945899 - 17945853
Alignment:
Q  221 tttcaatctttgcagaatttatcttaccaataattcccttacctttg 267  Q
    ||||||| ||| ||||||||||||||||||| ||||| |||||||||    
T  17945899 tttcaatttttacagaatttatcttaccaatgattcctttacctttg 17945853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 51994 - 51765
Alignment:
Q  24 aaagcatgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttact 123  Q
    |||||||||||| ||||||||||||||||||||||     || |||||||| ||||  ||||||||||||| ||||||||||||||||| |||||| |||    
T  51994 aaagcatgattcgacagggagttcatctaagtatagagtgtagacatttttatttcttgatccggtaaataggatttttcctgaagatatttgtctgact 51895  T
Q  124 tcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacatttt 223  Q
    ||||||||||||||||||||| | ||||||| ||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  51894 tcgcatgtgtgaggtttgaatattacttcaaaaccactatcacacaattgactgatgctaattaggttatgttttaatccttctacatattgaacatttt 51795  T
Q  224 caatctttgcagaatttatcttaccaataa 253  Q
    |||| || ||||||||||||||||||||||    
T  51794 caattttagcagaatttatcttaccaataa 51765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 609711 - 609482
Alignment:
Q  24 aaagcatgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttact 123  Q
    |||||||||||| ||||||||||||||||||||||     || |||||||| ||||  ||||||||||||| ||||||||||||||||| |||||| |||    
T  609711 aaagcatgattcgacagggagttcatctaagtatagagtgtagacatttttatttcttgatccggtaaataggatttttcctgaagatatttgtctgact 609612  T
Q  124 tcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacatttt 223  Q
    ||||||||||||||||||||| | ||||||| ||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  609611 tcgcatgtgtgaggtttgaatattacttcaaaaccactatcacacaattgactgatgctaattaggttatgttttaatccttctacatattgaacatttt 609512  T
Q  224 caatctttgcagaatttatcttaccaataa 253  Q
    |||| || ||||||||||||||||||||||    
T  609511 caattttagcagaatttatcttaccaataa 609482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 5388966 - 5389076
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  5388966 ttgtctgacttcacatatgttaggtttaaagataacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 5389065  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  5389066 tgaacattttc 5389076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 220
Target Start/End: Original strand, 14641801 - 14641975
Alignment:
Q  46 tcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttacttcgcatgtgtgaggtttgaatg 145  Q
    ||||||||| |||| ||||||| |||||| | || ||| || || || || |||||||| | ||| |||||| | ||||| ||| |||  | ||| ||      
T  14641801 tcatctaagaataaaacataaagatttttctgtctagaaccagtgaagaaaatttttccagtagagacttgtttgacttcacatatgttggatttaaaga 14641900  T
Q  146 taacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacat 220  Q
    | ||||||| ||| ||||| || |||||||| ||||| | || ||| |||||||||||||| |||||||||||||    
T  14641901 ttacttcaaaaccactgtcgcataattgacttatgcttagtaggttatgttttaatccttcaacatattgaacat 14641975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 26306846 - 26306736
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  26306846 ttgtctgacttcacatatgttaggtttaaagataacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 26306747  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  26306746 tgaacattttc 26306736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 26359972 - 26360082
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  26359972 ttgtctgacttcacatatgttaggtttaaagataacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 26360071  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  26360072 tgaacattttc 26360082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 32101670 - 32101560
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  32101670 ttgtctgacttcacatatgttaggtttaaagataacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 32101571  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  32101570 tgaacattttc 32101560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 44900589 - 44900479
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  44900589 ttgtctgacttcacatatgttaggtttaaagataacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 44900490  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  44900489 tgaacattttc 44900479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 46500404 - 46500294
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  46500404 ttgtctgacttcacatatgttaggtttaaagataacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 46500305  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  46500304 tgaacattttc 46500294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 266
Target Start/End: Complemental strand, 15178374 - 15178271
Alignment:
Q  163 tcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctttgcagaatttatcttaccaataattcccttac 262  Q
    ||||| |||||||| ||||| | ||  ||||||||||| ||||| ||||||||||| |  | ||| |||||||| | | ||||||||||||| || ||||    
T  15178374 tcacataattgacttatgcttagtagattgtgttttaaaccttcaacatattgaacgtccttaatttttgcagagtctttcttaccaataatacctttac 15178275  T
Q  263 cttt 266  Q
    ||||    
T  15178274 cttt 15178271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 16139234 - 16139345
Alignment:
Q  113 cttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacata 212  Q
    ||||||| ||||| ||| ||| |||||| ||  |||||||||  || || ||||| |||||||| ||||||| ||  || |||||||| ||||| |||||    
T  16139234 cttgtctgacttcacatatgttaggtttaaagataacttcaaatccactatcacataattgacttatgctaagtagattatgttttaaaccttccacata 16139333  T
Q  213 ttgaacattttc 224  Q
     |||||||||||    
T  16139334 ctgaacattttc 16139345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 6537742 - 6537664
Alignment:
Q  146 taacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttc 224  Q
    |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| ||||| |||||||||||    
T  6537742 taacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatactgaacattttc 6537664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 8504339 - 8504229
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  |  || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  8504339 ttgtctgacttcacatatgttaggtttaaagataacttcaaatctactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 8504240  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  8504239 tgaacattttc 8504229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 9542291 - 9542401
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||   ||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  9542291 ttgtctgacttcacatatgttaggtttaaagacaacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 9542390  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  9542391 tgaacattttc 9542401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 84801 - 84572
Alignment:
Q  24 aaagcatgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttact 123  Q
    |||||||||||| ||| ||||||||||||||||||     || |||||||| ||||  ||||||||||||| ||||||||||||||||| ||||||||||    
T  84801 aaagcatgattcgacaaggagttcatctaagtatagagtgtagacatttttatttcttgatccggtaaataggatttttcctgaagatatttgtcttact 84702  T
Q  124 tcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacatttt 223  Q
    | ||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||    
T  84701 ttgcatgtgtgaggtttgaatattacttcaagatcactgtcacacaattgactgatgctaattaggttatgttttaatccttctacctattgaacatttt 84602  T
Q  224 caatctttgcagaatttatcttaccaataa 253  Q
    |||| |||| ||| ||||||||||||||||    
T  84601 caatttttgtagagtttatcttaccaataa 84572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 266
Target Start/End: Original strand, 101438 - 101541
Alignment:
Q  163 tcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctttgcagaatttatcttaccaataattcccttac 262  Q
    ||||| |||||||| ||||| | ||  ||||||||||| ||||| |||||||||||||  ||||| |||||||| | | | ||||||||||| || ||||    
T  101438 tcacataattgacttatgcttagtagattgtgttttaaaccttcaacatattgaacatcctcaatttttgcagagtcttttttaccaataatacctttac 101537  T
Q  263 cttt 266  Q
    ||||    
T  101538 cttt 101541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 31 - 267
Target Start/End: Complemental strand, 166249 - 166013
Alignment:
Q  31 gattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttacttcgcatg 130  Q
    ||||||| |||||||| |||||| ||||| |||||||||||||| ||||  ||||||||||| |||||||||||||| ||| ||||| | ||||||||||    
T  166249 gattcaatagggagttaatctaaatataaaacataaacatttttatttcttgatccggtaaacaagatttttcctgaggattcttgtttaacttcgcatg 166150  T
Q  131 tgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctt 230  Q
    |||||| |||||| || ||||||||||| |||||||| |||||||| ||||| || ||||| |||||||| ||||| |||||||||||||||||||| ||    
T  166149 tgtgagttttgaaagttacttcaagaccactgtcacataattgacttatgctgatcaagttatgttttaaaccttccacatattgaacattttcaatttt 166050  T
Q  231 tgcagaatttatcttaccaataattcccttacctttg 267  Q
    |||||||||||||||||||||||  || |||||||||    
T  166049 tgcagaatttatcttaccaataacacctttacctttg 166013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 28 - 253
Target Start/End: Complemental strand, 24992028 - 24991803
Alignment:
Q  28 catgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttacttcgc 127  Q
    |||||||| ||| ||| ||||||||||||||     || |||||||| ||||  ||||||||||||| ||||||||||||||||| |||||| |||||||    
T  24992028 catgattcgacatggatttcatctaagtatagagtgtagacatttttatttcttgatccggtaaataggatttttcctgaagatatttgtctaacttcgc 24991929  T
Q  128 atgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaat 227  Q
    ||||||||||||||||| | ||||||| ||| || ||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  24991928 atgtgtgaggtttgaatattacttcaaaaccactatcacacaattgactgatgctaattaggttatgtttaaatccttctacatattgaacattttcaat 24991829  T
Q  228 ctttgcagaatttatcttaccaataa 253  Q
     || ||||||||||||||||||||||    
T  24991828 tttagcagaatttatcttaccaataa 24991803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 267
Target Start/End: Complemental strand, 1793958 - 1793719
Alignment:
Q  28 catgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttacttcgc 127  Q
    ||||||||| | || || ||||||| |||||| ||||| |  |||||  ||| ||| || ||||| || |||||||| || |||  |||| ||||||| |    
T  1793958 catgattcagctggaagatcatctaggtataaaacatataagttttttattctagaaccagtaaagaaaatttttcccgaggatgtttgttttacttcac 1793859  T
Q  128 atgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaat 227  Q
    || ||| |||||| ||  | ||||||| ||| || ||||| |||||||| ||||| |  |  ||||||||||| ||||| ||||||||||||||||| ||    
T  1793858 atatgttaggtttaaaattgacttcaaaaccactatcacataattgacttatgcttagcagattgtgttttaaaccttcaacatattgaacattttcgat 1793759  T
Q  228 ctttgcagaatttatcttaccaataattcccttacctttg 267  Q
     || |||| |||| ||||||||||||| || |||||||||    
T  1793758 tttagcagtatttttcttaccaataatacctttacctttg 1793719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 114 - 236
Target Start/End: Original strand, 27167031 - 27167153
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||||| ||| ||| ||| |||||| ||| |||||||||  || || |||||||||||||| ||||||| ||  |||||||| || |||||||||||     
T  27167031 ttgtcttatttcacatatgttaggtttaaatataacttcaaatccactatcacacaattgacttatgctaagtagattgtgtttcaaaccttctacatac 27167130  T
Q  214 tgaacattttcaatctttgcaga 236  Q
    ||||||||||| ||||| |||||    
T  27167131 tgaacattttctatcttagcaga 27167153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 22905435 - 22905319
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||||||||| ||| |||  ||||| ||| |||||||||  || || |||||||||||||| ||||||| ||  |||||||| || |||||||||||     
T  22905435 ttgtcttacttcacatatgtttggtttaaatataacttcaaatccactatcacacaattgactaatgctaagtagattgtgtttaaaaccttctacatac 22905336  T
Q  214 tgaacattttcaatctt 230  Q
    ||||||||||| |||||    
T  22905335 tgaacattttctatctt 22905319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 18654508 - 18654398
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  18654508 ttgtctgacttcacatatgttaggtttaaagataacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 18654409  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  18654408 tgaacattttc 18654398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 45017640 - 45017530
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  45017640 ttgtctgacttcacatatgttaggtttaaaaataacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 45017541  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  45017540 tgaacattttc 45017530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 9510847 - 9510925
Alignment:
Q  146 taacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttc 224  Q
    |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| ||||| |||||||||||    
T  9510847 taacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatactgaacattttc 9510925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 31 - 267
Target Start/End: Complemental strand, 17961 - 17725
Alignment:
Q  31 gattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttacttcgcatg 130  Q
    ||||||||| ||||||||||||| ||||| |||||||||||||||||||  ||||||||||| |||||||||||||| ||| ||||| | ||||| ||||    
T  17961 gattcaacaaggagttcatctaaatataaaacataaacatttttgtttcttgatccggtaaacaagatttttcctgaggattcttgtttaacttcacatg 17862  T
Q  131 tgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctt 230  Q
    |||| | ||||||  | ||| |||||||  ||||||| |||||||| ||||| || ||||| |||||||| ||||| |||||||||||||||||||| ||    
T  17861 tgtgggttttgaaaattactacaagaccattgtcacataattgacttatgctgatcaagttatgttttaaaccttccacatattgaacattttcaatttt 17762  T
Q  231 tgcagaatttatcttaccaataattcccttacctttg 267  Q
    |||| ||||||||||||||||||  ||||||||||||    
T  17761 tgcaaaatttatcttaccaataacacccttacctttg 17725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 85578 - 85703
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||||||||| ||| ||| |||||| ||   ||||||||  || || |||||||||||||| ||||||| ||  || | |||||| ||||| |||||     
T  85578 ttgtcttacttcacatatgttaggtttaaagacaacttcaaatccactatcacacaattgacttatgctaagtagattatattttaaaccttcaacatac 85677  T
Q  214 tgaacattttcaatctttgcagaatt 239  Q
    ||||||||||| || || ||||||||    
T  85678 tgaacattttctatattagcagaatt 85703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 24 - 163
Target Start/End: Complemental strand, 8922 - 8783
Alignment:
Q  24 aaagcatgattcaacagggagttcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttact 123  Q
    |||||||||||||||||||||||||||| | ||||     ||||||||||| ||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  8922 aaagcatgattcaacagggagttcatctgactatagagtgtaaacatttttatttcttgatccggtaaataagatttttcctgaagatatttgtcttact 8823  T
Q  124 tcgcatgtgtgaggtttgaatgtaacttcaagaccgctgt 163  Q
    ||||||||||||||||||||| | ||||||||||| ||||    
T  8822 tcgcatgtgtgaggtttgaatattacttcaagaccactgt 8783  T

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Target: scaffold0500; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 6695 - 6602
Alignment:
Q  160 ctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctttgcagaatttatcttaccaataa 253  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| ||| || || |||||||||||||||||||    
T  6695 ctgtcacacaattgactgatgctaattaaattatgttttaatccttctacgtattgaacatttttaattttagctgaatttatcttaccaataa 6602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 114 - 236
Target Start/End: Complemental strand, 12847 - 12725
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||||| ||| ||| ||| |||||| ||| |||||||||  || || ||||| |||||||| ||||||| ||  ||||||||||| |||||||||||     
T  12847 ttgtcttatttcacatatgttaggtttaaatataacttcaaatccactatcacataattgacttatgctaagtagattgtgttttaaaccttctacatac 12748  T
Q  214 tgaacattttcaatctttgcaga 236  Q
    ||||||||||| ||||| |||||    
T  12747 tgaacattttctatcttagcaga 12725  T

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Target: scaffold0003 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 114 - 236
Target Start/End: Complemental strand, 148302 - 148180
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||||||||| ||| ||| |||||| ||| |||||||||  ||  | |||||||||||||| || |||| ||  ||||||||||| |||||||||||     
T  148302 ttgtcttacttcacatatgttaggtttaaatataacttcaaatccattatcacacaattgacttatactaagtagattgtgttttaaaccttctacatac 148203  T
Q  214 tgaacattttcaatctttgcaga 236  Q
    ||||||||||| ||||| |||||    
T  148202 tgaacattttctatcttagcaga 148180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 267
Target Start/End: Original strand, 14279079 - 14279300
Alignment:
Q  46 tcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttacttcgcatgtgtgaggtttgaatg 145  Q
    ||||||||| |||| ||||||| |||||| |||| |||  | || || ||  ||||||| | ||| |||||| | ||||| ||| |||  ||||| ||      
T  14279079 tcatctaagaataaaacataaagatttttctttctagaggcagtgaagaaattttttccagtagagacttgtttgacttcacatatgttgggtttaaaga 14279178  T
Q  146 taacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctttgcagaatttatctt 245  Q
    | ||||||| ||| |||||||| |||||||| ||||| | || |||||||||||||||||| ||||||||||||| ||| || || ||||| |   | ||    
T  14279179 ttacttcaaaaccactgtcacataattgacttatgcttagtaggttgtgttttaatccttcaacatattgaacatcttctattttagcagagtcattttt 14279278  T
Q  246 accaataattcccttacctttg 267  Q
    ||||||||| || |||||||||    
T  14279279 accaataatacctttacctttg 14279300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 16158173 - 16158063
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||| ||||| ||| ||| |||||| ||  |||||||||  || || || ||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  16158173 ttgtctgacttcacatatgttaggtttaaagataacttcaaatccactatcgcacaattgacttatgctaagtagattatgttttaaaccttccacatac 16158074  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  16158073 tgaacattttc 16158063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 236
Target Start/End: Complemental strand, 29234 - 29112
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||||||||| ||| ||| |||||| ||   ||||||||  || || |||||||||||||| ||||||| ||  || | |||||| |||||||||||     
T  29234 ttgtcttacttcacatatgttaggtttaaagacaacttcaaatccactatcacacaattgacttatgctaagtagattattttttaaaccttctacatac 29135  T
Q  214 tgaacattttcaatctttgcaga 236  Q
    ||||||||||| ||||| |||||    
T  29134 tgaacattttctatcttagcaga 29112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 236
Target Start/End: Complemental strand, 149965 - 149843
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||||||||| ||| ||| | |||| ||   ||||||||  || || |||||||||||||| ||||||| ||  || |||||||| |||||||||||     
T  149965 ttgtcttacttcacatatgttacgtttaaagacaacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttctacatac 149866  T
Q  214 tgaacattttcaatctttgcaga 236  Q
    ||||||||||| ||||| |||||    
T  149865 tgaacattttctatcttagcaga 149843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0773 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0773
Description:

Target: scaffold0773; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 6023 - 5845
Alignment:
Q  46 tcatctaagtataagacataaacatttttgtttcgagatccggtaaataagatttttcctgaagatacttgtcttacttcgcatgtgtgaggtttgaatg 145  Q
    ||||||||| |||| ||||||| |||||| |||| |||  | || || ||  ||||||| | ||| |||||| | ||||| ||| |||  ||||| ||      
T  6023 tcatctaagaataaaacataaagatttttctttctagagtcagtgaagaaattttttccagtagagacttgtttgacttcacatatgttgggtttaaaga 5924  T
Q  146 taacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttc 224  Q
    | ||||||| ||| ||||| || |||||||| ||||| | || ||| |||||||||||||| | |||||||||||||||    
T  5923 ttacttcaaaaccactgtcgcataattgacttatgcttagtaggttatgttttaatccttcaatatattgaacattttc 5845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 51634 - 51744
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||||||||| ||| ||| |||||| ||   ||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  51634 ttgtcttacttcacatatgttaggtttaaagacaacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttcaacatac 51733  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  51734 tgaacattttc 51744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 266
Target Start/End: Complemental strand, 259727 - 259607
Alignment:
Q  146 taacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttcaatctttgcagaatttatctt 245  Q
    |||||||||  || |||||||| |||||| ||||||| | ||  || |||||||| ||||| ||||||||||||||||| || || ||||| ||  ||||    
T  259727 taacttcaaagccactgtcacataattgagtgatgcttagtagattatgttttaaaccttcaacatattgaacattttctattttagcagagttattctt 259628  T
Q  246 accaataattcccttaccttt 266  Q
    ||| ||| | || ||||||||    
T  259627 accgatagtacctttaccttt 259607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0611 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 1334 - 1224
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||||||||| ||| ||| |||||| |    ||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| |||||     
T  1334 ttgtcttacttcacatatgttaggtttaaggacaacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatac 1235  T
Q  214 tgaacattttc 224  Q
    |||||||||||    
T  1234 tgaacattttc 1224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 4650 - 4728
Alignment:
Q  146 taacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatattgaacattttc 224  Q
    |||||||||  || || |||||||||||||| ||||||| ||  || |||||||| ||||| ||||| |||||||||||    
T  4650 taacttcaaatccactatcacacaattgacttatgctaagtagattatgttttaaaccttccacatactgaacattttc 4728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 18732 - 18683
Alignment:
Q  171 ttgactgatgctaattaagttgtgttttaatccttctacatattgaacat 220  Q
    |||||||||||| |  ||||| |||||||| |||||||||||||||||||    
T  18732 ttgactgatgcttagcaagttatgttttaaaccttctacatattgaacat 18683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 33952 - 34061
Alignment:
Q  114 ttgtcttacttcgcatgtgtgaggtttgaatgtaacttcaagaccgctgtcacacaattgactgatgctaattaagttgtgttttaatccttctacatat 213  Q
    |||||||| ||| ||| ||| |||||| |||  ||||||||  || || ||||| |||||||| ||||||| ||  || ||||| || |||||||||||     
T  33952 ttgtcttatttcacatatgttaggtttaaatacaacttcaaatccactatcacataattgacttatgctaagtagattatgtttcaaaccttctacatac 34051  T
Q  214 tgaacatttt 223  Q
    ||||||||||    
T  34052 tgaacatttt 34061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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