View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2835_low_24 (Length: 275)

Name: NF2835_low_24
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2835_low_24
NF2835_low_24
[»] chr3 (8 HSPs)
chr3 (1-194)||(41576407-41576602)
chr3 (207-257)||(7031626-7031676)
chr3 (207-257)||(11203298-11203348)
chr3 (207-257)||(12342838-12342888)
chr3 (207-257)||(29524356-29524406)
chr3 (207-257)||(30695954-30696004)
chr3 (207-257)||(33496027-33496077)
chr3 (207-247)||(19890158-19890198)
[»] chr6 (9 HSPs)
chr6 (204-257)||(17579691-17579744)
chr6 (204-257)||(14514167-14514220)
chr6 (207-256)||(17606944-17606993)
chr6 (207-257)||(214882-214932)
chr6 (207-257)||(10929915-10929965)
chr6 (208-257)||(20883641-20883690)
chr6 (209-257)||(21630720-21630768)
chr6 (207-257)||(10577843-10577893)
chr6 (207-257)||(34714146-34714196)
[»] chr5 (5 HSPs)
chr5 (204-257)||(8300793-8300846)
chr5 (204-257)||(25858035-25858088)
chr5 (207-257)||(10773930-10773980)
chr5 (207-251)||(33385991-33386035)
chr5 (209-257)||(18359701-18359749)
[»] chr1 (6 HSPs)
chr1 (204-257)||(16918420-16918473)
chr1 (207-257)||(43387846-43387896)
chr1 (207-257)||(49094378-49094428)
chr1 (207-257)||(26206918-26206968)
chr1 (207-257)||(37192538-37192588)
chr1 (207-257)||(37298109-37298159)
[»] chr8 (5 HSPs)
chr8 (204-257)||(20823772-20823825)
chr8 (207-257)||(43269929-43269979)
chr8 (207-256)||(17698961-17699010)
chr8 (207-251)||(2169819-2169863)
chr8 (209-257)||(37433613-37433661)
[»] chr7 (3 HSPs)
chr7 (204-250)||(23911295-23911341)
chr7 (207-257)||(25618938-25618988)
chr7 (207-256)||(18529989-18530038)
[»] chr4 (8 HSPs)
chr4 (207-257)||(4548830-4548880)
chr4 (207-257)||(12697292-12697342)
chr4 (207-257)||(41973619-41973669)
chr4 (207-257)||(8360607-8360657)
chr4 (207-257)||(19468503-19468553)
chr4 (207-257)||(24506241-24506291)
chr4 (207-257)||(5142898-5142948)
chr4 (207-257)||(5147318-5147368)
[»] scaffold0178 (1 HSPs)
scaffold0178 (207-257)||(16915-16965)
[»] chr2 (3 HSPs)
chr2 (207-257)||(11000561-11000611)
chr2 (207-257)||(14439235-14439285)
chr2 (207-251)||(3400514-3400558)
[»] scaffold0472 (1 HSPs)
scaffold0472 (207-257)||(7421-7471)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 41576407 - 41576602
Alignment:
Q  1 cattattcccatcattccatgtctcatccatgtttaggttcaaccagcggagatagttttttatgatcataagatttaatctatgttaattaagcacaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41576407 cattattcccatcattccatgtctcatccatgtttaggttcaaccagcggagatagttttttatgatcataagatttaatctatgttaattaagcacaca 41576506  T
Q  101 aataaacacctttcttcaaaatgtt--aaatcaattttttaaattgttaaatgaaatgtttgtatctatcaatttttagacactttagatttaatc 194  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41576507 aataaacacctttcttcaaaatgttaaaaatcaattttttaaattgttaaatgaaatgtttgtatctatcaatttttagacactttagatttaatc 41576602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 7031676 - 7031626
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7031676 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagcacaag 7031626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 11203298 - 11203348
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  11203298 aaacaaaaatggaatatattactataaacactgtaattgttgaagcacaag 11203348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 12342888 - 12342838
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  12342888 aaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaag 12342838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 29524406 - 29524356
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  29524406 aaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaag 29524356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 30696004 - 30695954
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  |||| |||||||||||||| |||||    
T  30696004 aaacaaaaatggaatatattactatgaacattgtaattgttgaagcacaag 30695954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 33496027 - 33496077
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||| |||||    
T  33496027 aaacaaaaatggaatatattactatgaacactgtaatggttgaagcacaag 33496077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 19890158 - 19890198
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgtt 247  Q
    ||||||||||||||||||||||||  ||||| |||||||||    
T  19890158 aaacaaaaatggaatatattactatgaacaccgtaattgtt 19890198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 17579744 - 17579691
Alignment:
Q  204 aacaaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17579744 aacaaacaaaaatggaatatattactaaaaacactgtaattgttgaagcacaag 17579691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 14514220 - 14514167
Alignment:
Q  204 aacaaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  14514220 aacaaacaaaaatggaatatattactaaaaatactgtaattgttgaagcacaag 14514167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 17606993 - 17606944
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaa 256  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  17606993 aaacaaaaatggaatatattactataaacactgtaattgttgaagcacaa 17606944  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 214882 - 214932
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  214882 aaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaag 214932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 10929965 - 10929915
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  10929965 aaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaag 10929915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 20883690 - 20883641
Alignment:
Q  208 aacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    |||||||||||||||||||||||  |||||| |||||||||||| |||||    
T  20883690 aacaaaaatggaatatattactatgaacactttaattgttgaagcacaag 20883641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 21630768 - 21630720
Alignment:
Q  209 acaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||  |||| |||||||||||||| |||||    
T  21630768 acaaaaatggaatatattactatgaacattgtaattgttgaagcacaag 21630720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 10577893 - 10577843
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  ||||||| ||||||| ||| |||||    
T  10577893 aaacaaaaatggaatatattactatgaacactgcaattgttaaagcacaag 10577843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 34714196 - 34714146
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    |||||||||||||||||||||| |  |||||||||| |||||||| |||||    
T  34714196 aaacaaaaatggaatatattacaatgaacactgtaagtgttgaagcacaag 34714146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 8300846 - 8300793
Alignment:
Q  204 aacaaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8300846 aacaaacaaaaatggaatatattactaaaaacactgtaattgttgaagcacaag 8300793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 25858088 - 25858035
Alignment:
Q  204 aacaaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  25858088 aacaaacaaaaatgtaatatattactaaaaacactgtaattgttgaagcacaag 25858035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 10773930 - 10773980
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  10773930 aaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaag 10773980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 33386035 - 33385991
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaag 251  Q
    ||||||||||||||||||||||||  |||||||||||||||||||    
T  33386035 aaacaaaaatggaatatattactatgaacactgtaattgttgaag 33385991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 18359749 - 18359701
Alignment:
Q  209 acaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||  || || ||||||||||||| |||||    
T  18359749 acaaaaatggaatatattactatgaataccgtaattgttgaagcacaag 18359701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 16918473 - 16918420
Alignment:
Q  204 aacaaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16918473 aacaaacaaaaatggaatatattactaaaaacactgtaattgttgaagcacaag 16918420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 43387846 - 43387896
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43387846 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagcacaag 43387896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 49094378 - 49094428
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||| |||||||||||| |||||||||||||||||||| |||||    
T  49094378 aaacaaaaatgaaatatattactataaacactgtaattgttgaagcacaag 49094428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 26206968 - 26206918
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  || |||||||||||||||| |||||    
T  26206968 aaacaaaaatggaatatattactatgaatactgtaattgttgaagcacaag 26206918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 37192588 - 37192538
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    |||||||||| |||||||||||||  ||||| |||||||||||||||||||    
T  37192588 aaacaaaaatagaatatattactatgaacaccgtaattgttgaagtacaag 37192538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 37298159 - 37298109
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  ||||| ||||| ||||||| |||||    
T  37298159 aaacaaaaatggaatatattactatgaacaccgtaatagttgaagcacaag 37298109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 20823772 - 20823825
Alignment:
Q  204 aacaaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  20823772 aacaaccaaaaatggaatatattactaaaaacactgtaattgttgaagcacaag 20823825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 43269929 - 43269979
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  43269929 aaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaag 43269979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 17698961 - 17699010
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaa 256  Q
    ||||||||||||||||||||||||  || |||||||||||||||| ||||    
T  17698961 aaacaaaaatggaatatattactatgaatactgtaattgttgaagcacaa 17699010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 2169819 - 2169863
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaag 251  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||    
T  2169819 aaacaaaaatggaatatattactatgaacaccgtaattgttgaag 2169863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 37433613 - 37433661
Alignment:
Q  209 acaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    |||||||| |||||||||||||  ||||||||||||||| ||| |||||    
T  37433613 acaaaaatagaatatattactatcaacactgtaattgttaaagcacaag 37433661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 23911295 - 23911341
Alignment:
Q  204 aacaaacaaaaatggaatatattactaaaaacactgtaattgttgaa 250  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||    
T  23911295 aacaaacaaaaatgaaatatattactaaaaacactataattgttgaa 23911341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 25618938 - 25618988
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    |||||||||||||||||||||||| |||||  ||||||||||||| |||||    
T  25618938 aaacaaaaatggaatatattactataaacaacgtaattgttgaagcacaag 25618988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 18529989 - 18530038
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaa 256  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||| ||||    
T  18529989 aaacaaaaatggaatatattactatgaacaccgtaattgttgaagcacaa 18530038  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 4548880 - 4548830
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  4548880 aaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaag 4548830  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 12697292 - 12697342
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    |||||||||||||||||||||| | |||||||||||||||||||| |||||    
T  12697292 aaacaaaaatggaatatattacgataaacactgtaattgttgaagcacaag 12697342  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 41973619 - 41973669
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  41973619 aaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaag 41973669  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 8360607 - 8360657
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  |||| |||||||||||||| |||||    
T  8360607 aaacaaaaatggaatatattactatgaacattgtaattgttgaagcacaag 8360657  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 19468553 - 19468503
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||| ||||||||||||||  ||||||||||||||||||| |||||    
T  19468553 aaacaaaaacggaatatattactatgaacactgtaattgttgaagcacaag 19468503  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 24506291 - 24506241
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  |||||||| |||||||||| |||||    
T  24506291 aaacaaaaatggaatatattactatgaacactgtgattgttgaagcacaag 24506241  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 5142898 - 5142948
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  ||||| || |||||||||| |||||    
T  5142898 aaacaaaaatggaatatattactatgaacaccgttattgttgaagcacaag 5142948  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 5147318 - 5147368
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  ||||| || |||||||||| |||||    
T  5147318 aaacaaaaatggaatatattactatgaacaccgttattgttgaagcacaag 5147368  T

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Target: scaffold0178 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 16965 - 16915
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||| |||||    
T  16965 aaacaaaaatggaatatattactatgaacaccgtaattgttgaagcacaag 16915  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 11000611 - 11000561
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||| |||||    
T  11000611 aaacaaaaatggaatatattactatgaacaccgtaattgttgaagcacaag 11000561  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 14439235 - 14439285
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||| |||||    
T  14439235 aaacaaaaatggaatatattactatgaacaccgtaattgttgaagcacaag 14439285  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 3400514 - 3400558
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaag 251  Q
    |||| |||||||||||||||||||  ||||| |||||||||||||    
T  3400514 aaactaaaatggaatatattactatgaacaccgtaattgttgaag 3400558  T

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Target: scaffold0472 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 7471 - 7421
Alignment:
Q  207 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagtacaag 257  Q
    ||||||||||| ||||||||| ||  ||||||||||||||||||| |||||    
T  7471 aaacaaaaatgaaatatattattatgaacactgtaattgttgaagcacaag 7421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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