View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2835_low_28 (Length: 258)
Name: NF2835_low_28
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_low_28 |
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| [»] scaffold0126 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 49 - 241
Target Start/End: Original strand, 36793973 - 36794165
Alignment:
| Q |
49 |
gctatagttagctttaggtgatgagccactgaatgctattcttgacgagggcgtgccaaccacagagaactcaatgctcgcatacgatggaagtactcag |
148 |
Q |
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| T |
36793973 |
gctatagttagctttaggtgatgagccactgaatgctattcttgacgagggcgtgccaaccacagagaactcaatgctcgcatacgatggaagtactcag |
36794072 |
T |
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| Q |
149 |
ccatggcaagaaaacaccttgctgcttgacgcgtcgttaggatctgattcagacggtgaatggtttggtgccgtagattatctgcctgtaagt |
241 |
Q |
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| T |
36794073 |
ccatggcaagaaaacaccttgctgcttgacgcgtcgttaggatctgattcagacggtgaatggtttggtgccgtagattatctgcctgtaagt |
36794165 |
T |
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Target: scaffold0126 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 236
Target Start/End: Original strand, 18810 - 18962
Alignment:
| Q |
84 |
ctattcttgacgagggcgtgccaaccacagagaactcaatgctcgcatacgatggaagtactcagccatggcaagaaaacaccttgctgcttgacgcgtc |
183 |
Q |
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| T |
18810 |
ctattcttggcgaggacgggtcaaccagagagaactcaatgctcgaagacgatgaaagtactcagacattgcaaccaaacatcttgcagcttgacgaact |
18909 |
T |
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| Q |
184 |
gttaggatctgattcagacggtgaatggtttggtgccgtagattatctgcctg |
236 |
Q |
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| T |
18910 |
gttaacaactgatgcagacgatgaactgtttggtgcctcagattatctgcctg |
18962 |
T |
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