View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2835_low_31 (Length: 250)

Name: NF2835_low_31
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2835_low_31
NF2835_low_31
[»] chr4 (17 HSPs)
chr4 (1-243)||(253636-253882)
chr4 (78-206)||(5856260-5856388)
chr4 (78-203)||(5562915-5563040)
chr4 (78-203)||(5888146-5888271)
chr4 (78-204)||(5611731-5611857)
chr4 (78-203)||(5897009-5897134)
chr4 (136-219)||(5603671-5603754)
chr4 (80-202)||(5891158-5891279)
chr4 (78-203)||(5551362-5551487)
chr4 (78-202)||(5849936-5850060)
chr4 (152-234)||(5557204-5557286)
chr4 (133-203)||(5854911-5854981)
chr4 (137-200)||(5423075-5423138)
chr4 (137-200)||(5467378-5467441)
chr4 (89-208)||(5573064-5573183)
chr4 (89-208)||(5585271-5585390)
chr4 (140-198)||(3747174-3747232)
[»] chr8 (1 HSPs)
chr8 (155-227)||(1481432-1481504)
[»] chr5 (1 HSPs)
chr5 (137-200)||(20329764-20329827)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 253882 - 253636
Alignment:
Q  1 tatagcacactcattagttactagtgccactaccaccataaaattgtgaatttttgtcctctatggaaccttgaaatttttgtctaggagttgccaataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  253882 tatagcacactcattagttactagtgccactaccaccataaaattgtgaatttttgtcctctatggaaccttgaaatttttgtctaggagttgccgataa 253783  T
Q  101 cttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  253782 cttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaac 253683  T
Q  201 aag----atagccctctacatgctggttgtgaatgcaatctctgctc 243  Q
    |||    ||||||||||||||||||||||||||||||||||||||||    
T  253682 aagatatatagccctctacatgctggttgtgaatgcaatctctgctc 253636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 5856260 - 5856388
Alignment:
Q  78 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 177  Q
    ||||||| | ||||| |||||||| ||| |||||||| ||| |||| || | || |||||| | | ||||||||||||||| |||||| ||||||| |||    
T  5856260 ttttgtccatgagtttccaataacctaccctccattgcttccaaaacatgatgggaccaataacacttccaagcccaaaaataaatcctagttccacact 5856359  T
Q  178 taaaaaattccaatcaattgaacaagata 206  Q
    ||||||||||||||||||| |||||||||    
T  5856360 taaaaaattccaatcaattaaacaagata 5856388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 5562915 - 5563040
Alignment:
Q  78 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 177  Q
    ||||||||| ||||| |||||||||||| |||||||  ||| |||| |  |||| ||||| ||  ||||| ||||||||||||||||| | ||||| |||    
T  5562915 ttttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacgatgattccgagcccaaaaacaaatcccaattccacact 5563014  T
Q  178 taaaaaattccaatcaattgaacaag 203  Q
    |||||||||||| |||||||||||||    
T  5563015 taaaaaattccagtcaattgaacaag 5563040  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 5888271 - 5888146
Alignment:
Q  78 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 177  Q
    ||||||||| ||||| |||||||||||| |||||||  ||| |||| |  |||| ||||| ||  |||||||| ||||||| |||||| | ||||| |||    
T  5888271 ttttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacgatgattccaagtccaaaaataaatcccaattccacact 5888172  T
Q  178 taaaaaattccaatcaattgaacaag 203  Q
    |||||||||||| |||||||||||||    
T  5888171 taaaaaattccattcaattgaacaag 5888146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 5611731 - 5611857
Alignment:
Q  78 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 177  Q
    ||||||||| ||||| |||||||||||| |||||||  ||| |||| | ||| | ||| ||||  ||||| ||||||||||||||||| |  |||| |||    
T  5611731 ttttgtctacgagtttccaataacttactctccatttcttccaaaacaaaagaggaccgatgatgattccgagcccaaaaacaaatcccaactccacact 5611830  T
Q  178 taaaaaattccaatcaattgaacaaga 204  Q
    |||||||||||| ||||||||| ||||    
T  5611831 taaaaaattccagtcaattgaagaaga 5611857  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 5897134 - 5897009
Alignment:
Q  78 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 177  Q
    ||||||||| ||||| |||||||||||| |||||||  ||| |||| |  |||| ||||| ||  |||||||| ||||||| |||||| | ||||| |||    
T  5897134 ttttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacgatgattccaagtccaaaaataaatcccaattccacact 5897035  T
Q  178 taaaaaattccaatcaattgaacaag 203  Q
    |||||||||||  |||||||||||||    
T  5897034 taaaaaattccgttcaattgaacaag 5897009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 5603671 - 5603754
Alignment:
Q  136 aatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaagatagccctctacatgc 219  Q
    ||||| |||||||||||||||||  ||||| | ||||| ||||| ||||||||| ||||||||||||| ||||| |||||||||    
T  5603671 aatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaacaagctagccttctacatgc 5603754  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 5891279 - 5891158
Alignment:
Q  80 ttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatactta 179  Q
    ||||||| ||||| |||||||||||| |||||||  ||| |||  | | |||| |||||||  ||||| | ||||||||||||||| |  |||| |||||    
T  5891279 ttgtctacgagtttccaataacttactctccatttcttccaaacaagagggga-ccaatgatgattccgaacccaaaaacaaatcccaactccacactta 5891181  T
Q  180 aaaaattccaatcaattgaacaa 202  Q
    |||||||||||||||||||||||    
T  5891180 aaaaattccaatcaattgaacaa 5891158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 5551362 - 5551487
Alignment:
Q  78 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 177  Q
    ||||||||  ||||| |||||| ||||| |||||||  ||| |||| |  |||| ||  ||||  ||||||||||||||||||||||| |  |||| |||    
T  5551362 ttttgtctgcgagtttccaatagcttactctccatttcttccaaaacaagaggggacagatgatgattccaagcccaaaaacaaatcccaactccacact 5551461  T
Q  178 taaaaaattccaatcaattgaacaag 203  Q
    |||||||||||| |||||||||||||    
T  5551462 taaaaaattccagtcaattgaacaag 5551487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 5850060 - 5849936
Alignment:
Q  78 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 177  Q
    ||||||||| ||||| |||||||||||| |||||||  ||| |||| |  |||| |   |||| |||||| ||||||||||||||||| |  |||| |||    
T  5850060 ttttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggagtgatgataattccgagcccaaaaacaaatcccaactccacact 5849961  T
Q  178 taaaaaattccaatcaattgaacaa 202  Q
    |||||||||||| ||||| ||||||    
T  5849960 taaaaaattccagtcaatcgaacaa 5849936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 5557204 - 5557286
Alignment:
Q  152 ccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaagatagccctctacatgctggttgtgaatgcaa 234  Q
    ||||| |||||||| ||||| | ||||| ||||||||| |||||||||||||  |||| || |||||||||||||| ||||||    
T  5557204 ccaaacacaaatcccagttctacacttataaaattccagtcaattgaacaagtaagccttccacatgctggttgtggatgcaa 5557286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 5854981 - 5854911
Alignment:
Q  133 accaatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaag 203  Q
    ||||||||  ||||| ||||||||||||||||| |  |||||||| ||||||||||| |||||||||||||    
T  5854981 accaatgatgattccgagcccaaaaacaaatcccaactccatactcaaaaaattccagtcaattgaacaag 5854911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 5423075 - 5423138
Alignment:
Q  137 atgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaac 200  Q
    |||||||||||||| ||||||| |||||| |  |||| |||||| |||||||||||||||||||    
T  5423075 atgaaaattccaaggccaaaaataaatcccaactccacacttaagaaattccaatcaattgaac 5423138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 5467378 - 5467441
Alignment:
Q  137 atgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaac 200  Q
    |||||||||||||| ||||||| | |||| |  ||||||||||| ||| |||||||||||||||    
T  5467378 atgaaaattccaaggccaaaaatacatcccaactccatacttaagaaactccaatcaattgaac 5467441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 5573183 - 5573064
Alignment:
Q  89 agttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattcc 188  Q
    |||| |||||| ||||  |||||||| ||| |||| || || | |||||||| |||||| || ||||||||||| || | ||| | ||||||||| ||||    
T  5573183 agtttccaatatcttatcctccattgcttccaaaacattagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaatttcc 5573084  T
Q  189 aatcaattgaacaagatagc 208  Q
    | ||  ||||||||||||||    
T  5573083 agtctgttgaacaagatagc 5573064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 5585390 - 5585271
Alignment:
Q  89 agttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattcc 188  Q
    |||| |||||| ||||  |||||||| ||| |||| || || | |||||||| |||||| || ||||||||||| || | ||| | ||||||||| ||||    
T  5585390 agtttccaatatcttatcctccattgcttccaaaacattagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaatttcc 5585291  T
Q  189 aatcaattgaacaagatagc 208  Q
    | ||  ||||||||||||||    
T  5585290 agtctgttgaacaagatagc 5585271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 3747174 - 3747232
Alignment:
Q  140 aaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattga 198  Q
    ||||| |||||||| ||||||||||||| ||||| |||||||| |||||| ||| ||||    
T  3747174 aaaatcccaagcccgaaaacaaatccaaattccacacttaaaatattccagtcacttga 3747232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 1481432 - 1481504
Alignment:
Q  155 aaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaagatagccctctacatgctggttgtg 227  Q
    |||| |||||| | ||||| ||||| ||||||||| |||| |||||||| |||||||||||||| ||||||||    
T  1481432 aaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagccctctacatgttggttgtg 1481504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 20329827 - 20329764
Alignment:
Q  137 atgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaac 200  Q
    |||||||||||||| ||||||| |||||| |  |||| |||||| |||||||||||||||||||    
T  20329827 atgaaaattccaaggccaaaaataaatcccaactccacacttaagaaattccaatcaattgaac 20329764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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