View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2835_low_33 (Length: 240)
Name: NF2835_low_33
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 22996656 - 22996565
Alignment:
| Q |
20 |
ataaactcgctagtgtattgtcctatatgctaaaaatccaaataacttattcaaatgatgactcataagagaataattgtgctaaaaatttcaa |
113 |
Q |
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| T |
22996656 |
ataaactcgctagtgtactgtcctatatgctaaaaatccaaataacttatatagatgatgactc--aagagaataattgtgataaaaatttcaa |
22996565 |
T |
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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 22964910 - 22964949
Alignment:
| Q |
20 |
ataaactcgctagtgtattgtcctatatgctaaaaatcca |
59 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |
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| T |
22964910 |
ataaactcgctagtgtactgtcctatatgctaaaaatcca |
22964949 |
T |
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