View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2835_low_34 (Length: 238)
Name: NF2835_low_34
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4179720 - 4179500
Alignment:
| Q |
1 |
ccattagattaagagagatagatattatctctcttaatctaatgaacaacaatcgactgcaacctaaaacgactatagatgatctaggtttgatatatgc |
100 |
Q |
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| T |
4179720 |
ccattagattaagagagatagatattatctctcttaatctaatgaacaacaatcgactgcaacctaaaacaactatagatgatctaggtttgatatatgc |
4179621 |
T |
|
| Q |
101 |
tacctcaacatgaacatcatttaccaaaaattaaataaaataaatatgtgaatatatttgcctgaacataaaagaggggagagaacagaggaaattggcc |
200 |
Q |
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| T |
4179620 |
tacctcaacatgaacatcatttaccaaaaattaaataaaataaatatgtgaatatatttgcctgaacataaaagaggggagagaacagaggaaattggcc |
4179521 |
T |
|
| Q |
201 |
atcaatttcattccagaaaac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
4179520 |
atcaatttcattccagaaaac |
4179500 |
T |
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