View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2835_low_38 (Length: 208)
Name: NF2835_low_38
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_low_38 |
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| [»] chr8 (5 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 5e-95; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 2983059 - 2983266
Alignment:
| Q |
1 |
taatgtgtgcttgtgttaagctggcttgctcaataaaagaaatggaagactgaaggagatgcatgaagatggctgctctagatattaagagttttgattt |
100 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
2983059 |
taatgtgtgcttgttttaagctagcttgctcaataaaagaaatggaagactgaaggagatgcgtgaagatggctgctctagatattaagagttttgactt |
2983158 |
T |
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| Q |
101 |
tgtgaatgattattagttaaatttcttttcttgttattgtgttattttgtacttgctcataaacaagagactgattgatcaagggttctctttgttaaga |
200 |
Q |
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| T |
2983159 |
tctgaatgattataagttaactttcttttcttgttattgtgttattttgtacttgctcataaacatgagactgattgatcaagggttctctttgttaaga |
2983258 |
T |
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| Q |
201 |
gttctctt |
208 |
Q |
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|||||||| |
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| T |
2983259 |
gttctctt |
2983266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 2706428 - 2706221
Alignment:
| Q |
1 |
taatgtgtgcttgtgttaagctggcttgctcaataaaagaaatggaagactgaaggagatgcatgaagatggctgctctagatattaagagttttgattt |
100 |
Q |
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|||||||||||| |||||| || ||||||||||||||||||||||| ||||| | |||| ||||||||||||||||||||||| | |||| |||| |
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| T |
2706428 |
taatgtgtgcttttgttaatctagcttgctcaataaaagaaatggaggactggaaaagatttgtgaagatggctgctctagatattcaagttttttattt |
2706329 |
T |
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| Q |
101 |
tgtgaatgattattagttaaatttcttttcttgttattgtgttattttgtacttgctcataaacaagagactgattgatcaagggttctctttgttaaga |
200 |
Q |
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| T |
2706328 |
tctgcatgattattagttaattttcttttcttgtttttgtgttattttgtacttgctcataaacaagcgacctattgatcaagggttctctttgttaaga |
2706229 |
T |
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| Q |
201 |
gttctctt |
208 |
Q |
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|||||||| |
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| T |
2706228 |
gttctctt |
2706221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 74 - 208
Target Start/End: Complemental strand, 2708839 - 2708705
Alignment:
| Q |
74 |
tgctctagatatt-aagagttttgattttgtgaatgattattagttaaatttcttttcttgttattgtgttattttgtacttgctcataaacaagagact |
172 |
Q |
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||||||||||||| |||| |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2708839 |
tgctctagatattcaagattttt-attttctgaatgattattagttaattttcttttcttgttattgtgttattttatacttgctcataaacaagagact |
2708741 |
T |
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| Q |
173 |
gattgatcaagggttctctttgttaagagttctctt |
208 |
Q |
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| T |
2708740 |
gattgatcaagggtcctctttgttaagagttctctt |
2708705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 2992130 - 2992200
Alignment:
| Q |
2 |
aatgtgtgcttgtgttaagctggcttgctcaataaaagaaatggaagactgaaggagatgcatgaagatgg |
72 |
Q |
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| T |
2992130 |
aatgtgttcttgtgttaagctagctggctcaataaaagacatggaagactggaggagatgcgtgaagatgg |
2992200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 2992200 - 2992303
Alignment:
| Q |
96 |
gattttgtgaatgattattagttaaatttcttttcttgttattgtgttattttgtacttgctcataaacaagagactgattgatcaagggttctctttgt |
195 |
Q |
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|||||| ||||||||||||||| || |||||| |||||||| || ||||||||| |||||||||| ||| |||||||||| ||||||||||||| |
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| T |
2992200 |
gattttctgaatgattattagtgaattttcttgtcttgttaacgt--tattttgtatttgctcataa----gaggatgattgatcacgggttctctttgt |
2992293 |
T |
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| Q |
196 |
taagagttct |
205 |
Q |
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|||||||||| |
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| T |
2992294 |
taagagttct |
2992303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 10753031 - 10752825
Alignment:
| Q |
2 |
aatgtgtgcttgtgttaagctg-gcttgctcaataaaa-gaaatggaagactgaaggagatgcatgaagatggctgctctagatattaagagttttgatt |
99 |
Q |
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||||||||||||| | ||||| |||||||| |||||| ||||||||||||||||| |||||| ||||||||||||||||||||||| | ||||||| || |
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| T |
10753031 |
aatgtgtgcttgtttgaagctaagcttgctcgataaaaagaaatggaagactgaagtagatgcgtgaagatggctgctctagatattta-agttttggtt |
10752933 |
T |
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| Q |
100 |
ttgtgaatgattattagttaaatttcttttcttgttattg----tgttattttgtacttgctcataaacaagagactgattgatcaagggttctctttgt |
195 |
Q |
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|| ||||||||||||||| || |||||| |||||| ||| | |||||||||| ||||||| |||| |||||||||||| ||||||||||| |
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| T |
10752932 |
ttctgaatgattattagtaaattttcttagcttgtt-ttgttaatattattttgtatctgctcat----gagaggctgattgatcaaatgttctctttgt |
10752838 |
T |
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| Q |
196 |
taagagttctctt |
208 |
Q |
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||||||||||||| |
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| T |
10752837 |
taagagttctctt |
10752825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 18358518 - 18358580
Alignment:
| Q |
10 |
cttgtgttaagctggcttgctcaataaaagaaatggaagactgaaggagatgcatgaagatgg |
72 |
Q |
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||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||| ||||||||| |
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| T |
18358518 |
cttgtgttaagctagctggctcaataaaagacatggaagactggaggagatgcgtgaagatgg |
18358580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 18358656 - 18358689
Alignment:
| Q |
172 |
tgattgatcaagggttctctttgttaagagttct |
205 |
Q |
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| T |
18358656 |
tgattgatcacgggttctctttgttaagagttct |
18358689 |
T |
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