View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2835_low_4 (Length: 573)
Name: NF2835_low_4
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 563
Target Start/End: Complemental strand, 3080994 - 3080450
Alignment:
| Q |
1 |
ttttacctttggattattaaattactataataatcgattaaccttaaattaattca-----actgatc---gattagtgtgagagagaagagaaggaaag |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||| |||||||||||| |||||||||| |
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| T |
3080994 |
ttttacctttggattattaaattactataataatcgattaaccttaaattaattcaaccacacctacctttgatgagtgtgagagag--gagaaggaaa- |
3080898 |
T |
|
| Q |
93 |
tggtggaaaaatcaaagcaacaaaaatgaaggcaattgtaataacaaaaccaggtgaacctgaagttctacaacttaaagaggttgaagaccctcaaatc |
192 |
Q |
| |
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| T |
3080897 |
-----------tcaaagcaacaaaaatgaaggcaattgtaataacaaaaccaggtgaacctgaagttctacaacttcaagaggttcaagaccctcaaatc |
3080809 |
T |
|
| Q |
193 |
aaagacgatgaagtcctcatcaaagttcacgccactgcccttaacagagctgatacccttcagaggaaaggcgcttatcctccccctcaaggtgctagcc |
292 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3080808 |
aaagacgatgaagtcctcatcaaagttcacgccactgcccttaacagagctgatacccttcagaggaaaggcgcttatcctccccctcaaggtgctagcc |
3080709 |
T |
|
| Q |
293 |
cttatccaggtcttgaatgttccggaatcattgaattcgttggcaaaaacgtctccaagtggaaaattggtgatcaggtacctatatagcttttccatta |
392 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3080708 |
cttatccaggtcttgaatgttccggaattattgaattcgttggcaaaaacgtctccaagtggaaaattggtgatcaggtacctatatagcttttccatta |
3080609 |
T |
|
| Q |
393 |
ttctaagnnnnnnnnnnnnnnnnnnngtacaaatccattattcgaagtttaaaatccatagttttaatatttttgaagtgggtttttctttattttgaaa |
492 |
Q |
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| T |
3080608 |
ttctaag-------------ttttttgaacaaatccattattccaagtttaaaatccattattttaatatttttgaagtgggtttttctttattttgaaa |
3080522 |
T |
|
| Q |
493 |
attgaattgtggttctataattttaacatgaa-tttgcagttttataatatgtagaatatcacgtacctttg |
563 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
3080521 |
attgaattgtggttctataattttaacatgaattttgcagttttataataggtagaatatcacgtacctttg |
3080450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 115 - 372
Target Start/End: Complemental strand, 3068008 - 3067751
Alignment:
| Q |
115 |
aaaatgaaggcaattgtaataacaaaaccaggtgaacctgaagttctacaacttaaagaggttgaagaccctcaaatcaaagacgatgaagtcctcatca |
214 |
Q |
| |
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||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||||||| |||||| ||||||| ||||||| |
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| T |
3068008 |
aaaatgaaggctattgtaataacaacaccaggtggacctgaagttctacaacttcaagaggttcaagaccctcaacctaaagacaatgaagtactcatca |
3067909 |
T |
|
| Q |
215 |
aagttcacgccactgcccttaacagagctgatacccttcagaggaaaggcgcttatcctccccctcaaggtgctagcccttatccaggtcttgaatgttc |
314 |
Q |
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||| || ||||||||||||||||| || || ||| |||||||||||||| ||| ||| |||||||||||| ||||| |||||||||||||||||||| |
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| T |
3067908 |
gagtccatgccactgcccttaacagtgccgacaccgttcagaggaaaggcttttaccctatccctcaaggtgcaagcccctatccaggtcttgaatgttc |
3067809 |
T |
|
| Q |
315 |
cggaatcattgaattcgttggcaaaaacgtctccaagtggaaaattggtgatcaggta |
372 |
Q |
| |
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||||| |||| || |||||| | |||||| ||||||||||||||||||||||||||| |
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| T |
3067808 |
cggaactattgtatgcgttggtataaacgtttccaagtggaaaattggtgatcaggta |
3067751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 115 - 372
Target Start/End: Original strand, 18011311 - 18011568
Alignment:
| Q |
115 |
aaaatgaaggcaattgtaataacaaaaccaggtgaacctgaagttctacaacttaaagaggttgaagaccctcaaatcaaagacgatgaagtcctcatca |
214 |
Q |
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||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||||||| |||||| ||||||| ||||||| |
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| T |
18011311 |
aaaatgaaggctattgtaataacaacaccaggtggacctgaagttctacaacttcaagaggttcaagaccctcaacctaaagacaatgaagtactcatca |
18011410 |
T |
|
| Q |
215 |
aagttcacgccactgcccttaacagagctgatacccttcagaggaaaggcgcttatcctccccctcaaggtgctagcccttatccaggtcttgaatgttc |
314 |
Q |
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||| || ||||||||||||||||| || || ||| |||||||||||||| ||| ||| |||||||||||| ||||| |||||||||||||||||||| |
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| T |
18011411 |
gagtccatgccactgcccttaacagtgccgacaccgttcagaggaaaggcttttaccctatccctcaaggtgcaagcccctatccaggtcttgaatgttc |
18011510 |
T |
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| Q |
315 |
cggaatcattgaattcgttggcaaaaacgtctccaagtggaaaattggtgatcaggta |
372 |
Q |
| |
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||||| |||| || |||||| | |||||| ||||||||||||||||||||||||||| |
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| T |
18011511 |
cggaactattgtatgcgttggtataaacgtttccaagtggaaaattggtgatcaggta |
18011568 |
T |
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Back To:
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