View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2835_low_7 (Length: 534)
Name: NF2835_low_7
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 14432777 - 14433086
Alignment:
| Q |
19 |
actagggtatgtttcagatatctcattggtgaagttacagtacgcccttggatacttggttacagtgaagaccttgctttgttcaacagctcctctaaaa |
118 |
Q |
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| T |
14432777 |
actagggtatgtttcagatatctcattggtgaagttacagtacgcccttggatacttggttacagtgaagaccttgctttgttcaacagctcctctaaaa |
14432876 |
T |
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| Q |
119 |
ttctcccatctttctctcatgagacgtttgctatattcaaagaagagttcagattcaattgacttgaaattttggtaaccatcacaaatcactccaatga |
218 |
Q |
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| T |
14432877 |
ttctcccatctttctctcatgagacgtttgctatattcaaagaagagttcagattcaattgacttgaaattttggtaaccatcacaaatcactccaatga |
14432976 |
T |
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| Q |
219 |
tcttagctgctcttgtttgggattcttttgatacgcccattgagcttgattgcacaaatgtcaccatcttcttagcaacttcaatgtccttcacaatagc |
318 |
Q |
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| T |
14432977 |
tcttagctgctcttgtttgggattcttttgatacgcccattgagcttgattgcacaaatgtcaccatcttcttagcaacttcaatgtccttcacaatagc |
14433076 |
T |
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| Q |
319 |
ccagcttaac |
328 |
Q |
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| T |
14433077 |
ccagcttaac |
14433086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 361 - 534
Target Start/End: Original strand, 14433119 - 14433292
Alignment:
| Q |
361 |
tttgtcactcttaatctaacggtgtacaattaatttacgaactcaccctatacgggaaccagcatgaccagtgcatttggagaatgtgaagagcattaca |
460 |
Q |
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| T |
14433119 |
tttgtcactcttaatctaacggtgtacaattaatttacgaactcaccctatacgggaaccagcatgaccagtgcatttggagaatgtgaagagcattaca |
14433218 |
T |
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| Q |
461 |
tcatggtcagcctcataagtaataggagtgtattgtggccaataataggccaagtcatgaatcaatttcccttt |
534 |
Q |
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| T |
14433219 |
tcatggtcagcctcataagtaataggagtgtattgtggccaataataggccaagtcatgaatcaatttcccttt |
14433292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 89 - 314
Target Start/End: Original strand, 14440934 - 14441162
Alignment:
| Q |
89 |
accttgctttgttcaacagctcctctaaaattctcccatctttctctcatgagacgtttgctatattcaaagaagagtt---cagattcaattgacttga |
185 |
Q |
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| T |
14440934 |
accttgcttttctcaatagctcccttaaatttctcccacctttctatcatgagttttttggtataattaaaaaagaggtgatcagatccaacggacttga |
14441033 |
T |
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| Q |
186 |
aattttggtaaccatcacaaatcactccaatgatcttagctgctcttgtttgggattcttttgatacgcccattgagcttgattgcacaaatgtcaccat |
285 |
Q |
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| T |
14441034 |
aattttcgtaaccatcacaaatcacttcaatgatcttagcagctcgaatttgggattcttttgacaccccaatggaacttaggtgcatgaatctcatcat |
14441133 |
T |
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| Q |
286 |
cttcttagcaacttcaatgtccttcacaa |
314 |
Q |
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| T |
14441134 |
cttcttagcaacttcaatgtccttcacaa |
14441162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 401 - 533
Target Start/End: Original strand, 14441490 - 14441622
Alignment:
| Q |
401 |
actcaccctatacgggaaccagcatgaccagtgcatttggagaatgtgaagagcattacatcatggtcagcctcataagtaataggagtgtattgtggcc |
500 |
Q |
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| T |
14441490 |
actcacccgatacgggaaccaccatgaccggtgcatttggataacgtgaagagcgtaacatcttgattaatctggtgagtaattggagtgtattgtggcc |
14441589 |
T |
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| Q |
501 |
aataataggccaagtcatgaatcaatttccctt |
533 |
Q |
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| T |
14441590 |
agtaataggccaaatcataaattagtttccctt |
14441622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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