View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2835_low_9 (Length: 461)
Name: NF2835_low_9
Description: NF2835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2835_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 19 - 443
Target Start/End: Complemental strand, 6848020 - 6847596
Alignment:
| Q |
19 |
tttgtacctcactgtcatcattttctgttctaatcatatttcctttaagcctgtgcaattcagcctgaacctgatcaaccttagggtgtgattgatctcc |
118 |
Q |
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| T |
6848020 |
tttgtacctcactgtcatcattttctgttctaatcatatttcctttaagcctgtgcaattcagcctgcacctgatcaaccttagggtgtgattgatctcc |
6847921 |
T |
|
| Q |
119 |
agaagagaacacatgaatgtcattcttggcctcaatccaacttaacccaggttctttttccattatcaatctcttcatatttcttcttatttcagcaact |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6847920 |
agaagagaacacatgaatgtcattcttggcctcaatccaacttaacccaggttctttttccattatcaatcccttcatatttcttcttatttcagcaact |
6847821 |
T |
|
| Q |
219 |
tcatcccatctccctgcagcagcataaagattagaaagcaaaacaagtgttggaccatcttctgcattgaatctcaaaacttcttctgccgcacgaactc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6847820 |
tcatcccatctccctgcagcagcataaagattagaaagcaaaataagtgttggaccatcttctgcattgaatctcaaaacttcttctgccgcacgaactc |
6847721 |
T |
|
| Q |
319 |
ccactttcaaatttttatttataacacaggcacttagcaaagttctccataattcaacattgtcctcaagataaggtgatttgttgatgatttcttctgc |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6847720 |
ccactttcaaatttttatttataacacaggcacttagcaaagttctccataattcaacattgtcctcaacataaggtgatttgttgatgatttcttctgc |
6847621 |
T |
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| Q |
419 |
ttcttccaataatgccgcacgactc |
443 |
Q |
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||||||||||||||||||||||||| |
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| T |
6847620 |
ttcttccaataatgccgcacgactc |
6847596 |
T |
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