View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2836_high_10 (Length: 324)
Name: NF2836_high_10
Description: NF2836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2836_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 42619227 - 42619340
Alignment:
| Q |
28 |
gtatattttcgtaattttgatacatttagagactataggaacaaactactcgcatattcaagaaccaagatgtcagtctactcactaaatatactatcaa |
127 |
Q |
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| T |
42619227 |
gtatattttcgtaattttgatatattcagagactatatgaacaaactactcgcatattcaaggaccaaaatgacagtctactcacaaaatatactatcaa |
42619326 |
T |
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| Q |
128 |
attagctaaactca |
141 |
Q |
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||||| |||||||| |
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| T |
42619327 |
attagttaaactca |
42619340 |
T |
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Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 221 - 308
Target Start/End: Original strand, 42619406 - 42619490
Alignment:
| Q |
221 |
cttgtaattaaccaaattagctagtaaaacaaagagaattgacaataatgcnnnnnnnccaacctcagtgcaaactccaacaacttct |
308 |
Q |
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| T |
42619406 |
cttgtaattaaccaaattagctagtaaaac--agagaattgacaataatgc-aaaagaccgacctcagtgcaaactccaacaacttct |
42619490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 26446451 - 26446575
Alignment:
| Q |
16 |
atacatatataagtatattttcgtaattttgatacatttagagactataggaacaaactactcgcatattcaagaaccaagatgtcagtctactcactaa |
115 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||| ||| ||||| ||| | | ||| ||||||| |
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| T |
26446451 |
atacatatataagtatatttttgtaattttgatacatttagagactattggaacaaacttgtcgcatattgaaggaccaaaatgactggcta-tcactaa |
26446549 |
T |
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| Q |
116 |
atatactatcaaattagctaaactca |
141 |
Q |
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|||||||||||||||||||||||||| |
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| T |
26446550 |
atatactatcaaattagctaaactca |
26446575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 221 - 308
Target Start/End: Original strand, 26446654 - 26446742
Alignment:
| Q |
221 |
cttgtaattaaccaaattagctagtaaaacaaagagaattgacaataatgc-nnnnnnnccaacctcagtgcaaactccaacaacttct |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26446654 |
cttgtaattaaccaaattagctagtaaaacaaagagaattgacaataatgcaaaaaaaaccaacctcagtgcaaactccaacaacttct |
26446742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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