View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2836_high_13 (Length: 243)
Name: NF2836_high_13
Description: NF2836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2836_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 11000107 - 10999888
Alignment:
| Q |
15 |
attatttataatccaagaaatatgagaaagttacatactggatgtattatttgcacccattatttgaacactattccatggaaaaaacttcccccataaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11000107 |
attatttataatccaagaaatatgagaaagttacatattagatgtattatttgcacccattatttgaacactattccaaggaaaaaacttcccccataaa |
11000008 |
T |
|
| Q |
115 |
tatccaccagttttatttattttccactcgcaattgtgacaaatatctcgtttttgcttataaacttcaatataatgacgattgggatttcctggccatg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
11000007 |
tatccaccagttttatttattttccactcgcaattgtgacaaatatctcgtttttgcttataaacttcaatataatgacgattaggatttcctgaccatg |
10999908 |
T |
|
| Q |
215 |
taaagctgcagaagaataat |
234 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
10999907 |
taaagctgcagaagaataat |
10999888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 74 - 234
Target Start/End: Complemental strand, 10973646 - 10973486
Alignment:
| Q |
74 |
ttatttgaacactattccatggaaaaaacttcccccataaatatccaccagttttatttattttccactcgcaattgtgacaaatatctcgtttttgctt |
173 |
Q |
| |
|
|||||| |||||||||||| ||| |||||| ||||||||||||||||||||||||| | ||||||||||||| || | ||| ||||||| ||||||| |
|
|
| T |
10973646 |
ttatttcaacactattccaaggataaaactgcccccataaatatccaccagttttaatcattttccactcgcggttttcacatccatctcgtctttgctt |
10973547 |
T |
|
| Q |
174 |
ataaacttcaatataatgacgattgggatttcctggccatgtaaagctgcagaagaataat |
234 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
10973546 |
ataaacttcaatataatgacgatcgggatttcctggccacgtaaagctgcaaaagaataat |
10973486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 233
Target Start/End: Original strand, 11041014 - 11041208
Alignment:
| Q |
39 |
agaaagttacatactggatgtattatttgcacccattatttgaacactattccatggaaaaaacttcccccataaatatccaccagttttatttattttc |
138 |
Q |
| |
|
||||||||||| |||||||| ||||||| |||||||| ||||||| |||| ||| | |||| |||| || | |||||||||||||||| |||||| |
|
|
| T |
11041014 |
agaaagttacaacttggatgtaccatttgcatgcattatttcaacactactccaaggatagaactgccccgatttaaatccaccagttttattcattttc |
11041113 |
T |
|
| Q |
139 |
cactcgcaattgtgacaaatatctcgtttttgcttataaacttcaatataatgacgattgggatttcctggccatgtaaagctgcagaagaataa |
233 |
Q |
| |
|
|||| | | | || |||||||||||| | |||| ||||||||||||||||| ||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
11041114 |
cactggaggctattgcacccatctcgtttttgactgtaaatttcaatataatgacgatatggacttccttgccatgtaaaactgcagaagaataa |
11041208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 233
Target Start/End: Complemental strand, 7846988 - 7846791
Alignment:
| Q |
36 |
atgagaaagttacatactggatgtattatttgcacccattatttgaacactattccatggaaaaaacttcccccataaatatccaccagttttatttatt |
135 |
Q |
| |
|
|||||||| ||| || |||||||| | |||||| ||||||||| |||||| ||||| ||| | ||||||||||| | ||||||||||| |||| ||| |
|
|
| T |
7846988 |
atgagaaaattaaattttggatgtactgtttgcatccattatttcaacacttttccaaggataccacttcccccatttagatccaccagttctattcatt |
7846889 |
T |
|
| Q |
136 |
ttccactcgcaattgtgacaaatatctcgtttttgcttataaacttcaatataatgacgattgggatttcctggccatgtaaagctgcagaagaataa |
233 |
Q |
| |
|
||||||| | | | || |||||||||||| | |||| |||||||||||||||| ||| ||||| ||||||||||||||||||| ||||| |
|
|
| T |
7846888 |
ttccactggaggctattgcagccatctcgtttttgactgtaaatatcaatataatgacgatatggacttccttgccatgtaaagctgcagaaaaataa |
7846791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 233
Target Start/End: Complemental strand, 11073486 - 11073306
Alignment:
| Q |
53 |
tggatgtattatttgcacccattatttgaacactattccatggaaaaaacttcccccataaatatccaccagttttatttattttccactcgcaattgtg |
152 |
Q |
| |
|
|||||||| |||||||| ||||||||| || ||| ||||| ||| | ||||||||||| | ||||||||||| |||| |||||||||| || | |
|
|
| T |
11073486 |
tggatgtactatttgcatccattatttcaatacttttccaaggataccacttcccccatttagatccaccagttctattcattttccactgaagatcatc |
11073387 |
T |
|
| Q |
153 |
acaaatatctcgtttttgcttataaacttcaatataatgacgattgggatttcctggccatgtaaagctgcagaagaataa |
233 |
Q |
| |
|
|| |||||||||||| | |||| |||||||||||||||| ||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
11073386 |
gcagccatctcgtttttgactgtaaatatcaatataatgacgatatggacttccctgccatgtaaagctgcagaaaaataa |
11073306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 11059705 - 11059630
Alignment:
| Q |
159 |
atctcgtttttgcttataaacttcaatataatgacgattgggatttcctggccatgtaaagctgcagaagaataat |
234 |
Q |
| |
|
|||||||||||| | |||| |||||||||||||||| ||| ||||| ||||||||||||||||||| |||||| |
|
|
| T |
11059705 |
atctcgtttttgactgtaaatatcaatataatgacgatatggacttccttgccatgtaaagctgcagaaaaataat |
11059630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University