View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2836_high_2 (Length: 584)
Name: NF2836_high_2
Description: NF2836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2836_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 19 - 572
Target Start/End: Original strand, 51507406 - 51507959
Alignment:
| Q |
19 |
aataagtcgattaaaaaatcgtaagcatattttccattnnnnnnnnngactagaaagcaaagagtatcaagccaaatggtccatcccattatgaatttgc |
118 |
Q |
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| T |
51507406 |
aataagtcgattaaaaaatcgtaagcatattttccattaaaaaaaaagactagaaagcaaagagtatcaagccaaatggtccatcccattatgaatttgc |
51507505 |
T |
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| Q |
119 |
cttggcccacaataacaatgcatgaattggaacctctcttagagaggcatggagagacagaagaagacactgaatacgatcgaataacatgacaaaaatt |
218 |
Q |
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| T |
51507506 |
cttggcccacaataacaatgcatgaattggaacctctcttagagaggcatggagagacagaagaagacactgaatacgattgaataacatgacaaaaatt |
51507605 |
T |
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| Q |
219 |
gcagtgtattcagaatggccaataagaaattatgagtgagacacctagattttcttatcgtgactttcataggtatctagaatttcctattatcatgtat |
318 |
Q |
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| T |
51507606 |
gcagtgtattcagaatggccaataagaaattatgagtgagacacctagattttcttatcgtgactttcataggtatctagaatttcctattatcatgtat |
51507705 |
T |
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| Q |
319 |
tccttcaggtatggggagccgtacgggtacatcaatataaaattagtttttaatcataatataacatgatagaattatattgttcaaatggcaaccaaaa |
418 |
Q |
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| T |
51507706 |
tccttcaggtatggggagctgtacgggtacatcaatataaaattagtttttaatcataatataacatgatagaattatattgttcaaatggaaaccaaaa |
51507805 |
T |
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| Q |
419 |
tcaaaaatctatttgttcaaaaaactcaagatctatatgcatgactattaaaaatcacactctgacactgtcaataacaatatcactatatctttttccg |
518 |
Q |
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| T |
51507806 |
tcaaaaacctatttgttcaaaaaactcaagatctatatgcatgactattaaaaatcacactctgacactgtcaataacaatatcactatatctttttccc |
51507905 |
T |
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| Q |
519 |
caagtaaaagttcaagttttaaataaatggctgcttacttcaagttccgagtat |
572 |
Q |
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| T |
51507906 |
caagtaaaagttcaagttttaaataaatggctgcttacttcaagttccgagtat |
51507959 |
T |
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