View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2836_high_3 (Length: 583)

Name: NF2836_high_3
Description: NF2836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2836_high_3
NF2836_high_3
[»] chr5 (26 HSPs)
chr5 (450-569)||(1083521-1083640)
chr5 (213-294)||(19533891-19533974)
chr5 (213-294)||(25935274-25935357)
chr5 (216-294)||(8674460-8674538)
chr5 (213-294)||(14834827-14834910)
chr5 (213-294)||(22766955-22767038)
chr5 (213-304)||(35379347-35379439)
chr5 (213-294)||(37722878-37722961)
chr5 (213-294)||(40090398-40090481)
chr5 (213-294)||(41762199-41762282)
chr5 (213-293)||(22303855-22303937)
chr5 (250-291)||(12479949-12479990)
chr5 (225-294)||(37145485-37145554)
chr5 (213-294)||(927305-927388)
chr5 (213-294)||(20320632-20320715)
chr5 (213-294)||(37090284-37090367)
chr5 (214-294)||(9894306-9894388)
chr5 (240-294)||(8255059-8255112)
chr5 (213-292)||(20523208-20523289)
chr5 (213-294)||(32250082-32250164)
chr5 (213-282)||(3563280-3563351)
chr5 (250-294)||(12064452-12064496)
chr5 (213-282)||(20523136-20523207)
chr5 (250-294)||(28490034-28490078)
chr5 (250-294)||(33146215-33146259)
chr5 (258-294)||(34105121-34105157)
[»] chr6 (20 HSPs)
chr6 (19-104)||(26652576-26652661)
chr6 (19-104)||(26758544-26758629)
chr6 (213-294)||(28918168-28918251)
chr6 (310-420)||(27420571-27420681)
chr6 (19-200)||(27605649-27605829)
chr6 (19-118)||(26654493-26654595)
chr6 (19-118)||(26760463-26760565)
chr6 (19-194)||(27334565-27334735)
chr6 (19-194)||(27395305-27395475)
chr6 (240-299)||(26901746-26901805)
chr6 (213-294)||(1368480-1368563)
chr6 (225-294)||(13487292-13487361)
chr6 (245-294)||(15832503-15832552)
chr6 (21-68)||(31282880-31282928)
chr6 (213-294)||(34244967-34245050)
chr6 (213-292)||(776155-776236)
chr6 (227-305)||(29395495-29395573)
chr6 (250-294)||(8475203-8475247)
chr6 (216-305)||(10737695-10737786)
chr6 (213-294)||(29889421-29889504)
[»] scaffold0003 (1 HSPs)
scaffold0003 (310-420)||(66682-66792)
[»] chr4 (17 HSPs)
chr4 (213-304)||(42776640-42776733)
chr4 (213-294)||(41139478-41139559)
chr4 (226-294)||(1539659-1539727)
chr4 (213-294)||(10633035-10633118)
chr4 (213-294)||(31473852-31473935)
chr4 (213-282)||(36456011-36456082)
chr4 (213-290)||(55266852-55266931)
chr4 (259-294)||(17727116-17727151)
chr4 (259-294)||(40338239-40338274)
chr4 (213-299)||(52493929-52494015)
chr4 (213-272)||(5715747-5715808)
chr4 (250-292)||(27284651-27284693)
chr4 (213-292)||(36455910-36455991)
chr4 (213-294)||(2125860-2125943)
chr4 (250-294)||(40548205-40548249)
chr4 (250-294)||(42775647-42775691)
chr4 (250-294)||(56339175-56339219)
[»] chr8 (22 HSPs)
chr8 (213-294)||(36103104-36103187)
chr8 (220-294)||(35404739-35404813)
chr8 (213-291)||(14242-14321)
chr8 (225-294)||(8049271-8049340)
chr8 (213-294)||(515529-515612)
chr8 (213-294)||(29257348-29257431)
chr8 (213-294)||(44889357-44889440)
chr8 (214-294)||(44346675-44346757)
chr8 (213-292)||(3853619-3853700)
chr8 (213-292)||(3858077-3858158)
chr8 (213-291)||(33986007-33986087)
chr8 (213-294)||(23011737-23011820)
chr8 (250-294)||(29611412-29611456)
chr8 (213-294)||(33377294-33377377)
chr8 (213-294)||(35979001-35979084)
chr8 (213-293)||(24044963-24045045)
chr8 (213-304)||(28324649-28324742)
chr8 (228-293)||(15186815-15186880)
chr8 (250-294)||(26520436-26520480)
chr8 (213-294)||(29482804-29482887)
chr8 (250-294)||(30444930-30444974)
chr8 (250-294)||(34008823-34008867)
[»] chr2 (23 HSPs)
chr2 (213-294)||(13017782-13017865)
chr2 (213-294)||(769039-769122)
chr2 (213-294)||(1583796-1583879)
chr2 (213-294)||(2274775-2274858)
chr2 (213-294)||(11141308-11141391)
chr2 (213-294)||(33189244-33189327)
chr2 (225-304)||(30698298-30698377)
chr2 (245-299)||(31613849-31613903)
chr2 (213-294)||(10480122-10480205)
chr2 (213-294)||(11532240-11532323)
chr2 (213-294)||(11793898-11793981)
chr2 (213-294)||(35047666-35047749)
chr2 (259-293)||(7167655-7167689)
chr2 (213-304)||(7227989-7228082)
chr2 (213-292)||(27033493-27033574)
chr2 (225-294)||(11606730-11606799)
chr2 (246-294)||(1730091-1730139)
chr2 (226-294)||(3092300-3092368)
chr2 (250-294)||(8736428-8736472)
chr2 (213-282)||(11716411-11716482)
chr2 (213-282)||(14365703-14365774)
chr2 (213-282)||(14537202-14537273)
chr2 (250-294)||(32840179-32840223)
[»] chr1 (20 HSPs)
chr1 (212-305)||(51847854-51847948)
chr1 (224-294)||(946929-946999)
chr1 (213-294)||(24273207-24273290)
chr1 (213-294)||(26501066-26501149)
chr1 (511-571)||(46763196-46763256)
chr1 (213-294)||(47165199-47165282)
chr1 (213-299)||(8224771-8224859)
chr1 (250-294)||(47820255-47820299)
chr1 (213-292)||(6470675-6470756)
chr1 (213-292)||(15034662-15034743)
chr1 (213-292)||(43622967-43623048)
chr1 (259-304)||(34003512-34003557)
chr1 (212-290)||(37036940-37037020)
chr1 (225-294)||(37448388-37448457)
chr1 (227-304)||(44570697-44570774)
chr1 (213-282)||(15034744-15034815)
chr1 (250-294)||(15467950-15467994)
chr1 (213-282)||(23536070-23536141)
chr1 (215-292)||(34756432-34756511)
chr1 (250-294)||(50471792-50471836)
[»] chr7 (24 HSPs)
chr7 (213-304)||(25189189-25189282)
chr7 (213-294)||(23548584-23548667)
chr7 (213-294)||(26162110-26162193)
chr7 (213-294)||(39342615-39342698)
chr7 (213-292)||(31632725-31632806)
chr7 (250-291)||(19865530-19865571)
chr7 (213-294)||(6498738-6498821)
chr7 (213-294)||(14603235-14603318)
chr7 (213-294)||(18789219-18789302)
chr7 (213-294)||(28539141-28539224)
chr7 (213-294)||(35455807-35455890)
chr7 (213-294)||(35776928-35777011)
chr7 (225-292)||(5976549-5976616)
chr7 (214-294)||(23455220-23455302)
chr7 (214-294)||(30629061-30629143)
chr7 (213-292)||(29065822-29065903)
chr7 (250-304)||(30080764-30080818)
chr7 (225-294)||(29639188-29639257)
chr7 (214-304)||(34115610-34115702)
chr7 (213-291)||(40110740-40110820)
chr7 (213-294)||(9784904-9784987)
chr7 (250-294)||(32650615-32650659)
chr7 (250-294)||(45984382-45984426)
chr7 (250-294)||(45988742-45988786)
[»] chr3 (21 HSPs)
chr3 (222-294)||(50168596-50168668)
chr3 (213-294)||(53129829-53129912)
chr3 (259-294)||(9007441-9007476)
chr3 (214-294)||(21307518-21307600)
chr3 (213-277)||(46635860-46635926)
chr3 (213-304)||(47767435-47767528)
chr3 (226-294)||(19475834-19475902)
chr3 (213-294)||(53470415-53470498)
chr3 (213-293)||(37054397-37054479)
chr3 (213-293)||(42005940-42006022)
chr3 (213-304)||(7302349-7302442)
chr3 (226-304)||(30766571-30766649)
chr3 (213-292)||(44436261-44436342)
chr3 (213-282)||(9129429-9129500)
chr3 (213-282)||(9137536-9137607)
chr3 (250-294)||(26323398-26323442)
chr3 (232-304)||(34396483-34396555)
chr3 (213-290)||(36397979-36398058)
chr3 (213-282)||(44692907-44692978)
chr3 (213-282)||(46672801-46672872)
chr3 (213-294)||(48947608-48947691)
[»] scaffold0400 (1 HSPs)
scaffold0400 (213-294)||(4485-4568)
[»] scaffold0365 (1 HSPs)
scaffold0365 (213-294)||(5129-5212)
[»] scaffold0129 (1 HSPs)
scaffold0129 (213-287)||(19779-19854)
[»] scaffold0301 (1 HSPs)
scaffold0301 (213-294)||(7154-7237)
[»] scaffold0169 (1 HSPs)
scaffold0169 (226-294)||(4093-4161)
[»] scaffold0337 (1 HSPs)
scaffold0337 (250-294)||(16361-16405)
[»] scaffold0048 (1 HSPs)
scaffold0048 (213-282)||(82946-83017)
[»] scaffold0027 (1 HSPs)
scaffold0027 (213-294)||(10889-10972)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 4e-61; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 450 - 569
Target Start/End: Original strand, 1083521 - 1083640
Alignment:
Q  450 gtgaattttaatctgatgaattgaaacatgtttcctttatcaggaggtggcttggaatacagaagcaggagtagtttgtctgagagagagccaagcacaa 549  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1083521 gtgaattttaatctgatgaattgaaacatgtttcctttatcaggaggtggcttggaatacagaagcaggagtagtttgtctgagagagagccaagcacaa 1083620  T
Q  550 tcaaaaagagcaaaacaggt 569  Q
    ||||||||||||||||||||    
T  1083621 tcaaaaagagcaaaacaggt 1083640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 19533974 - 19533891
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||||||||||||  ||| |||| || | ||| |||||||||||||| |||||||||||||||||||||    
T  19533974 gtgtgtttggatggaggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaatttcattgtttgga 19533891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 25935357 - 25935274
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| |||| || | |||||||||||||||||| ||||||||| |||||||||||    
T  25935357 gtgtgtttggatgggggaatgttttgagggaatgtaatgttatgaggaaattcaaatactttgaggtgaattccattgtttgga 25935274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 8674538 - 8674460
Alignment:
Q  216 tgtttggatgggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||| ||| |||||| |||| |||| ||||||| |||||||| || ||||| ||||||| |||||||||||    
T  8674538 tgtttggatggggatgctttgaggtaatataatgttttaagaaaattcaattaattttaagtgaattccattgtttgga 8674460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 14834827 - 14834910
Alignment:
Q  213 gtgtgtttggatggga--atgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||| ||||||  |||||| |||  ||| |||| |||||||| ||| |||||||||| |||||||||||||||||||||    
T  14834827 gtgtgtttgcatgggagaatgtttcgagggaatgtaatgttttaagggaatccaaatactttgaggtgaatttcattgtttgga 14834910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 22766955 - 22767038
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||| |||||||||||||| |||||||||  ||||||||||    
T  22766955 gtgtgtttggatgggggaatgttttgagggaatataatgttttgagggaattcaaatactttaaggtgaattctattgtttgga 22767038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 304
Target Start/End: Original strand, 35379347 - 35379439
Alignment:
Q  213 gtgtgtttggatggg-aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 304  Q
    ||||||||||||||| ||||||||||| |||| |||| |||| ||| ||||||||| |||| | |||||||| |||| ||||| |||| ||||    
T  35379347 gtgtgtttggatggggaatgttttgagataatgtaatgttttgagggaattcaaattctttgaagtgaattttattgattggatgataatttg 35379439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 37722961 - 37722878
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  ||| |||||||  ||| |||| |||| ||| |||||||||||||| ||||||||| |||||||||||    
T  37722961 gtgtgtttggatgggggaatattttgagggaatgtaatgttttgagggaattcaaatactttgaggtgaattccattgtttgga 37722878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 40090481 - 40090398
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| | | |||||||||||||| ||||||||| |||||||||||    
T  40090481 gtgtgtttggatgggggaatgttttgaggaaatgtaatgttttgatggaattcaaatactttgaggtgaattccattgtttgga 40090398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 41762282 - 41762199
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  |||||||| |||||||||||    
T  41762282 gtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtgaattccattgtttgga 41762199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 22303937 - 22303855
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgg 293  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| | | ||||||||||| || ||||||||||||||||||||    
T  22303937 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtgaatttcattgtttgg 22303855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 12479949 - 12479990
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgttt 291  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  12479949 ttttgaggaaattcaaatactttgaggtgaatttcattgttt 12479990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 37145554 - 37145485
Alignment:
Q  225 gggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||| |||| || | ||  |||||||||||||| |||||||||||||||||||||    
T  37145554 gggaatgttttgagggaatgtaatgttatgagagaattcaaatactttgaggtgaatttcattgtttgga 37145485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 927305 - 927388
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| || | |||| ||| ||||||||||||||  |||||||| |||||||||||    
T  927305 gtgtgtttggatggggaaatgttttgagggaatgtattgttttgagggaattcaaatactttggggtgaattccattgtttgga 927388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 20320715 - 20320632
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||   |||||||||||   ||| ||||||||||||| ||||||||||||||   ||||||| |||||||||||    
T  20320715 gtgtgtttggatgaatgaatgttttgaaggaatgtaatattttaagggaattcaaatactttggtgtgaattccattgtttgga 20320632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 37090284 - 37090367
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||| |  |||||||||||| ||||   || |||| |||||||||||||| ||||| ||||||| |||||||||||    
T  37090284 gtgtgtttggatagaagaatgttttgaggtaatgcgatgttttgaggaaattcaaatatttttatgtgaattccattgtttgga 37090367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 9894388 - 9894306
Alignment:
Q  214 tgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  |||||||||||  ||| |||| ||   ||| |||||||||||||| ||||||||| |||||||||||    
T  9894388 tgtgtttggatgggggaatgttttgagggaatgtaatgttaccagggaattcaaatactttgaggtgaattccattgtttgga 9894306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 8255059 - 8255112
Alignment:
Q  240 taatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||| |||| |||| ||| |||||||||| |||||||||||||||||||||||||    
T  8255059 taatgtaatgttttgagggaattcaaata-ttttaggtgaatttcattgtttgga 8255112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 20523289 - 20523208
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 292  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||  ||||||||    
T  20523289 gtgtgtttggatgggggaatgttttgagagaatgtaatgttttgagggaattcaactactttaaggtgaattctattgtttg 20523208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 32250164 - 32250082
Alignment:
Q  213 gtgtgtttggatggg-aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||| |||||||||||  ||  |||| |||| ||| ||||||||||| || || |||||| |||||||||||    
T  32250164 gtgtgtttggatggggaatgttttgagggaaagtaatgttttgagggaattcaaataccttgagatgaattccattgtttgga 32250082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 3563280 - 3563351
Alignment:
Q  213 gtgtgtttggat--gggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatt 282  Q
    ||||||||||||  ||||||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||    
T  3563280 gtgtgtttggataggggaatgttttgagggaatgtaatgttttgagggaattcaactactttaaggtgaatt 3563351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 12064496 - 12064452
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||| ||| |||| ||||||||| |||||||||||||||||||||    
T  12064496 ttttgagggaatttaaatactttgaggtgaatttcattgtttgga 12064452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 20523136 - 20523207
Alignment:
Q  213 gtgtgtttggatggga--atgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatt 282  Q
    ||||||||||||||||  ||||||||||  ||| ||||||| | ||| ||||||| |||||| |||||||||    
T  20523136 gtgtgtttggatgggagaatgttttgagggaatgtaatattctgagggaattcaactactttgaggtgaatt 20523207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 28490034 - 28490078
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||| ||| |||||||||||||| ||||||||| |||||||||||    
T  28490034 ttttgagggaattcaaatactttgaggtgaattccattgtttgga 28490078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 33146215 - 33146259
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||| ||| |||||||||||||| ||||||||| |||||||||||    
T  33146215 ttttgagggaattcaaatactttgaggtgaattccattgtttgga 33146259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 34105121 - 34105157
Alignment:
Q  258 aaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||| || ||||||||||||||||||    
T  34105121 aaattcaaatactttgagatgaatttcattgtttgga 34105157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 26652661 - 26652576
Alignment:
Q  19 ccttaaaaatcaatgtcaatgccttaaaatcaaagtgacatttccaagtgggaacttaaaaattaattgagagcggatattttgtt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26652661 ccttaaaaatcaatgtcaatgccttaaaatcaaagtgacatttccaagtgggaacttcaaaattaattgagagcggatattttgtt 26652576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 26758629 - 26758544
Alignment:
Q  19 ccttaaaaatcaatgtcaatgccttaaaatcaaagtgacatttccaagtgggaacttaaaaattaattgagagcggatattttgtt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26758629 ccttaaaaatcaatgtcaatgccttaaaatcaaagtgacatttccaagtgggaacttcaaaattaattgagagcggatattttgtt 26758544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 28918168 - 28918251
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||||||||||||  ||| |||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  28918168 gtgtgtttggatggaggaatgttttgagggaatgtaatgttttaaggaaattcaaatactttgaggtgaatttcattgtttgga 28918251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 420
Target Start/End: Original strand, 27420571 - 27420681
Alignment:
Q  310 taaaagaacaaatcttcttaatgctcctgttagcggaaacgttattgacagtctgtagctaaaaactgaaacgattcaaactaatttacgttttcttctt 409  Q
    ||||| |||||| | | |||||||| ||||||| |||||  || |||||||||||||||| ||||||||||| |||||||||||||  |||||| | |||    
T  27420571 taaaacaacaaaccatattaatgcttctgttagaggaaattttgttgacagtctgtagcttaaaactgaaacaattcaaactaattagcgttttgtactt 27420670  T
Q  410 tgctgcatagc 420  Q
    ||| |||||||    
T  27420671 tgccgcatagc 27420681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 27605649 - 27605829
Alignment:
Q  19 ccttaaaaatcaatgtcaatgccttaaaa-tcaaagtgacatttccaagtgggaacttaaaaattaattgagagc--ggatattttgtttagacctcaaa 115  Q
    |||||||| ||||||| |||||||||||| ||||| ||| |||| |||||||||   ||||||| ||||||||||   |||||||||||||||||| |||    
T  27605649 ccttaaaagtcaatgttaatgccttaaaagtcaaactgaaattttcaagtgggatgctaaaaatgaattgagagctgtgatattttgtttagaccttaaa 27605748  T
Q  116 agttnnnnnnnngtcgttctcatatttcctgtgtttgtgtccaaacaaatacttaatctcgtctatcgaactgacatttccaact 200  Q
    |||         ||| || | ||||||  |||||||| | || ||||||||||||||||| ||| | ||||||||||||||||||    
T  27605749 agt----caaaagtcattatgatatttattgtgtttgcggccgaacaaatacttaatctcatctttggaactgacatttccaact 27605829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 26654595 - 26654493
Alignment:
Q  19 ccttaaaaatcaatgtcaatgcctt-aaaatcaaagtgacatttccaagtgggaacttaaaaattaattgagagc--ggatattttgtttagacctcaaa 115  Q
    |||||||||| |||||||||||||| ||||||||| |||||||| |||||| || |||| |||| |||||| |||   |||||||||||||||| |||||    
T  26654595 ccttaaaaattaatgtcaatgccttaaaaatcaaactgacattttcaagtgagaccttagaaatgaattgacagctgtgatattttgtttagacttcaaa 26654496  T
Q  116 agt 118  Q
    |||    
T  26654495 agt 26654493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 26760565 - 26760463
Alignment:
Q  19 ccttaaaaatcaatgtcaatgcctt-aaaatcaaagtgacatttccaagtgggaacttaaaaattaattgagagc--ggatattttgtttagacctcaaa 115  Q
    |||||||||| |||||||||||||| ||||||||| |||||||| |||||| || |||| |||| |||||| |||   |||||||||||||||| |||||    
T  26760565 ccttaaaaattaatgtcaatgccttaaaaatcaaactgacattttcaagtgagaccttagaaatgaattgacagctgtgatattttgtttagacttcaaa 26760466  T
Q  116 agt 118  Q
    |||    
T  26760465 agt 26760463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 27334565 - 27334735
Alignment:
Q  19 ccttaaaaatcaatgtcaatgccttaaaa-tcaaagtgacatttccaagtgggaacttaaaaattaattgagagcgg--atattttgtttagacctcaaa 115  Q
    |||| |||||||||||||||| ||||||| ||||| |||||||| ||| ||||  | |||||||||||  ||| | |  |||||||||||||||||||||    
T  27334565 cctttaaaatcaatgtcaatgacttaaaaatcaaactgacattttcaaatgggtccctaaaaattaatcaagaactgtgatattttgtttagacctcaaa 27334664  T
Q  116 agttnnnnnnnngtcgttctcatatttcctgtgtttgtgtccaaacaaatacttaatctcgtctatcgaactgacattt 194  Q
    ||||        |||||||| ||||||  | |||    |||||||||||||||||||||| ||||| ||||||||||||    
T  27334665 agttaaaa----gtcgttctgatatttattatgt----gtccaaacaaatacttaatctcatctattgaactgacattt 27334735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 27395305 - 27395475
Alignment:
Q  19 ccttaaaaatcaatgtcaatgccttaaaa-tcaaagtgacatttccaagtgggaacttaaaaattaattgagagcgg--atattttgtttagacctcaaa 115  Q
    |||| |||||||||||||||| ||||||| ||||| |||||||| ||| ||||  | |||||||||||  ||| | |  |||||||||||||||||||||    
T  27395305 cctttaaaatcaatgtcaatgacttaaaaatcaaactgacattttcaaatgggtccctaaaaattaatcaagaactgtgatattttgtttagacctcaaa 27395404  T
Q  116 agttnnnnnnnngtcgttctcatatttcctgtgtttgtgtccaaacaaatacttaatctcgtctatcgaactgacattt 194  Q
    ||||        |||||||| ||||||  | |||    |||||||||||||||||||||| ||||| ||||||||||||    
T  27395405 agttaaaa----gtcgttctgatatttattatgt----gtccaaacaaatacttaatctcatctattgaactgacattt 27395475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 26901805 - 26901746
Alignment:
Q  240 taatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggata 299  Q
    |||| ||||||||| ||| |||||||||| ||||||||||||||||||||| ||||||||    
T  26901805 taatgtaatattttgagggaattcaaataattttaggtgaatttcattgttcggaggata 26901746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 1368480 - 1368563
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||||||||||||  ||| ||||||||||||| |||||||||  ||| |||||||||  ||||||||||    
T  1368480 gtgtgtttggatggaggaatgttttgagagaatgtaatattttaagggaattcaaatgttttgaggtgaattctattgtttgga 1368563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 13487292 - 13487361
Alignment:
Q  225 gggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||| || | || | ||| |||||||||||||| |||||||||||||||||||||    
T  13487292 gggaatgttttgagggaatgtagtgttatgagggaattcaaatactttgaggtgaatttcattgtttgga 13487361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 15832503 - 15832552
Alignment:
Q  245 taatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||| |||||||| ||||||||||||||  ||||||||||||||||||||    
T  15832503 taatgttttaagggaattcaaatactttggggtgaatttcattgtttgga 15832552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 31282928 - 31282880
Alignment:
Q  21 ttaaaaatcaatgtcaatgcctt-aaaatcaaagtgacatttccaagtg 68  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| |||||    
T  31282928 ttaaaaatcaatgtcaatgccttaaaaatcaaaatgacatttctaagtg 31282880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 34245050 - 34244967
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||||||||||||  ||| |||| |||| ||| |||||||||||||| | || |||| |||||||||||    
T  34245050 gtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaaatactttgatgtaaattccattgtttgga 34244967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 776236 - 776155
Alignment:
Q  213 gtgtgtttggatgggaa--tgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 292  Q
    |||||||||||| ||||  |||||||||  ||| |||| |||| ||||||||||| |||||| |||||||||  ||||||||    
T  776236 gtgtgtttggataggaaaatgttttgagggaatgtaatgttttgaggaaattcaactactttaaggtgaattctattgtttg 776155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 305
Target Start/End: Complemental strand, 29395573 - 29395495
Alignment:
Q  227 gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttgg 305  Q
    |||||||||||| |||| ||||||| | ||| | ||||||| |||||| || |||||||||| ||||| |||| |||||    
T  29395573 gaatgttttgaggtaatgtaatattgtgagggagttcaaatgcttttaagtcaatttcattggttggatgataatttgg 29395495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 8475203 - 8475247
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||| ||| ||||||||||||||| |||||||| |||||||||||    
T  8475203 ttttgagggaattcaaatacttttgggtgaattccattgtttgga 8475247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 305
Target Start/End: Complemental strand, 10737786 - 10737695
Alignment:
Q  216 tgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttgg 305  Q
    |||||||||||  |||||||| ||| |||| || | |||  ||| |||| |||| ||||||||| ||||||||||||| || ||||||||||    
T  10737786 tgtttggatggaggaatgtttcgaggtaatatattttttcgagggaatttaaattcttttaggtaaatttcattgttttgatgatagtttgg 10737695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 29889504 - 29889421
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  |||||||||||   ||| |||| |||| ||| |||||||||||||| | ||||||| |||| ||||||    
T  29889504 gtgtgtttggatggaggaatgttttgatggaatgtaatgttttgagggaattcaaatactttgatgtgaattccattatttgga 29889421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 420
Target Start/End: Complemental strand, 66792 - 66682
Alignment:
Q  310 taaaagaacaaatcttcttaatgctcctgttagcggaaacgttattgacagtctgtagctaaaaactgaaacgattcaaactaatttacgttttcttctt 409  Q
    ||||| |||||| | | |||||||| ||||||| |||||  || |||||||||||||||| ||||||||||| |||||||||||||  |||||| | |||    
T  66792 taaaacaacaaaccatattaatgcttctgttagaggaaattttgttgacagtctgtagcttaaaactgaaacaattcaaactaattagcgttttgtactt 66693  T
Q  410 tgctgcatagc 420  Q
    ||| |||||||    
T  66692 tgccgcatagc 66682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 304
Target Start/End: Original strand, 42776640 - 42776733
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 304  Q
    ||||||||||||||  ||||||||| || | || |||| |||| || ||||||||||||||||||||||||||||||||||||| |||| ||||    
T  42776640 gtgtgtttggatggaagaatgtttttaggttatgtaatgttttgagtaaattcaaatacttttaggtgaatttcattgtttggatgataatttg 42776733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 41139478 - 41139559
Alignment:
Q  213 gtgtgtttggatgggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||| | | |||||| |||| |||| |||| ||||||||||||||||||||||||||||  ||||||||||    
T  41139478 gtgtgtttggatggggaagctttgaggtaatgtaatgttttgaggaaattcaaatacttttaggtgaattctattgtttgga 41139559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 1539659 - 1539727
Alignment:
Q  226 ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||  ||| |||| |||| ||| |||||||||||||| |||||||||||||||||||||    
T  1539659 ggaatgttttgagggaatgtaatgttttgagggaattcaaatactttgaggtgaatttcattgtttgga 1539727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 10633035 - 10633118
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| |||| || | ||| |||||||||||||| |||||||||||||||||||||    
T  10633035 gtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaatttcattgtttgga 10633118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 31473852 - 31473935
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| |||| || | ||| |||||||||||||| |||||||||| ||||||||||    
T  31473852 gtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattttattgtttgga 31473935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 36456082 - 36456011
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatt 282  Q
    ||||||||||||||  ||||||||||||  ||| ||||||||| ||||||||||| |||||| |||||||||    
T  36456082 gtgtgtttggatggaggaatgttttgagggaatgtaatattttgaggaaattcaactactttaaggtgaatt 36456011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 55266931 - 55266852
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtt 290  Q
    ||||||||||||||  ||||||||||||  ||| ||||||||| ||| ||||||| |||||| |||||||||| ||||||    
T  55266931 gtgtgtttggatggatgaatgttttgaggaaatataatattttgagggaattcaactactttaaggtgaattttattgtt 55266852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 17727116 - 17727151
Alignment:
Q  259 aattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||| |||||||||||||||||||||    
T  17727116 aattcaaatactttgaggtgaatttcattgtttgga 17727151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 40338274 - 40338239
Alignment:
Q  259 aattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||| |||||||||||||||||||||    
T  40338274 aattcaaatactttgaggtgaatttcattgtttgga 40338239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 299
Target Start/End: Original strand, 52493929 - 52494015
Alignment:
Q  213 gtgtgtttggatggg-aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggata 299  Q
    ||||||||||||||| ||||||||||  |||| |||| ||| | |||| || ||||| ||||||||||||||| ||||||||| ||||    
T  52493929 gtgtgtttggatggggaatgttttgaagtaatgtaatgtttgagggaa-ttaaaatatttttaggtgaatttcgttgtttggatgata 52494015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 5715747 - 5715808
Alignment:
Q  213 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttt 272  Q
    |||||||||||||  ||||||||||||| |||| |||| |||| ||| ||||||||||||||    
T  5715747 gtgtgtttggatgagggaatgttttgagataatgtaatgttttgaggtaattcaaatacttt 5715808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 27284693 - 27284651
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttg 292  Q
    |||||||  |||||||||||||| |||||||||||||||||||    
T  27284693 ttttaagagaattcaaatactttgaggtgaatttcattgtttg 27284651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 36455910 - 36455991
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 292  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||  ||||||||    
T  36455910 gtgtgtttggatgggggaatgttttgagggaatctaatgttttgagggaattcaactactttaaggtgaattctattgtttg 36455991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 2125860 - 2125943
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  ||| |||||||  ||| || | |||| ||| ||||||||||||||  |||||||| |||||||||||    
T  2125860 gtgtgtttggatgggggaatattttgagggaatgtattgttttgagggaattcaaatactttggggtgaattccattgtttgga 2125943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 40548249 - 40548205
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||| ||||||||||||||||||  |||||||| |||||||||||    
T  40548249 ttttgaggaaattcaaatactttggggtgaattccattgtttgga 40548205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 42775647 - 42775691
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||| ||| |||||||||||||| ||||||||| |||||||||||    
T  42775647 ttttgagggaattcaaatactttgaggtgaattccattgtttgga 42775691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 56339175 - 56339219
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||| ||| |||||||||||||| | |||||||||||||||||||    
T  56339175 ttttgagggaattcaaatactttgatgtgaatttcattgtttgga 56339219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 36103104 - 36103187
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||||||||||||  ||| |||| ||||||||||||||||||||||| | ||||||| |||||||||||    
T  36103104 gtgtgtttggatggaggaatgttttgagggaatgtaatgttttaaggaaattcaaatactttgatgtgaattgcattgtttgga 36103187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 35404813 - 35404739
Alignment:
Q  220 tggatgggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||| |||| ||||||||| |||||||||||||||||| |||||||||| | ||||||||    
T  35404813 tggatgggaatgttacgaggtaatgtaatattttgaggaaattcaaatactttgaggtgaattttactgtttgga 35404739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 291
Target Start/End: Original strand, 14242 - 14321
Alignment:
Q  213 gtgtgtttggatggg-aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgttt 291  Q
    ||||||||||||||| ||||||| |||  ||| |||| |||||||| ||||||||||||||  |||||||||||||||||    
T  14242 gtgtgtttggatggggaatgtttggagggaatgtaatgttttaagggaattcaaatactttggggtgaatttcattgttt 14321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 8049271 - 8049340
Alignment:
Q  225 gggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||| |||| |||| ||| |||||||||||||| |||| ||||||||||||||||    
T  8049271 gggaatgttttgagggaatataatgttttgagggaattcaaatactttgaggtaaatttcattgtttgga 8049340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 515612 - 515529
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  |||||||||||   ||| |||| |||||||| | |||||||||||| | |||||||||||||||||||    
T  515612 gtgtgtttggatggaggaatgttttgaaggaatgtaatgttttaagggagttcaaatactttgatgtgaatttcattgtttgga 515529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 29257431 - 29257348
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  |||||||| |||||||||||    
T  29257431 gtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtgaattccattgtttgga 29257348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 44889357 - 44889440
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||||||||||||  ||| |||| |||| ||| |||||||||||||| | ||||||| |||||||||||    
T  44889357 gtgtgtttggatggaggaatgttttgagggaatataatgttttgagggaattcaaatactttgatgtgaattccattgtttgga 44889440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 44346757 - 44346675
Alignment:
Q  214 tgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  |||||||| |||||||||||    
T  44346757 tgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtgaattccattgtttgga 44346675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 3853619 - 3853700
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 292  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||||||||||| |||||| |||||||||  ||||||||    
T  3853619 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggaaattcaactactttgaggtgaattctattgtttg 3853700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 3858077 - 3858158
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 292  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||||||||||| |||||| |||||||||  ||||||||    
T  3858077 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggaaattcaactactttgaggtgaattctattgtttg 3858158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 213 - 291
Target Start/End: Original strand, 33986007 - 33986087
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgttt 291  Q
    |||||||||||||||  ||||| ||||  |||| |||| |||| ||  |||||||||||||| ||||||||||||||||||    
T  33986007 gtgtgtttggatgggggaatgtcttgaagtaatgtaatgttttgagagaattcaaatactttgaggtgaatttcattgttt 33986087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 23011737 - 23011820
Alignment:
Q  213 gtgtgtttggatggga--atgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||| ||||  ||||||||||  ||| |||| || | ||| |||||||||||||| ||||||||| |||||||||||    
T  23011737 gtgtgtttggacgggagaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattccattgtttgga 23011820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 29611412 - 29611456
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||| ||| |||||||||||||| |||||||||||||||||||||    
T  29611412 ttttgagggaattcaaatactttgaggtgaatttcattgtttgga 29611456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 33377377 - 33377294
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| || | |||| ||| ||||||||||||||  |||||||| |||||||||||    
T  33377377 gtgtgtttggatgggggaatgttttgagggaatatattgttttgagggaattcaaatactttggggtgaattccattgtttgga 33377294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 35979084 - 35979001
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||||||||||||  ||| |||| ||   ||| |||||||||||||| ||||||||| |||||||||||    
T  35979084 gtgtgtttggatggaggaatgttttgagggaatgtaatcttaagagggaattcaaatactttgaggtgaattccattgtttgga 35979001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 24044963 - 24045045
Alignment:
Q  213 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgg 293  Q
    |||||||||||||  |||||||||||||  ||| |||| |||| | | ||||||||||| || ||||||||| ||||||||||    
T  24044963 gtgtgtttggatgagggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtgaattccattgtttgg 24045045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 304
Target Start/End: Complemental strand, 28324742 - 28324649
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 304  Q
    ||||||||||||||  ||||||||||||  ||| |||| |||| | | ||||||||||| || || |||||| |||||||||||  ||||||||    
T  28324742 gtgtgtttggatggaggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgagctgaattacattgtttggataatagtttg 28324649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 15186880 - 15186815
Alignment:
Q  228 aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgg 293  Q
    ||||||||||| |||| |||| |||| || ||||||||||| ||| |||||||||  |||||||||    
T  15186880 aatgttttgagataatgtaatgttttgagtaaattcaaatagtttaaggtgaattctattgtttgg 15186815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 26520480 - 26520436
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||| ||| |||||||||||||| ||||||||| |||||||||||    
T  26520480 ttttgagggaattcaaatactttgaggtgaattccattgtttgga 26520436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 29482887 - 29482804
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||  || | |||| ||| ||||||||||||||  |||||||| |||||||||||    
T  29482887 gtgtgtttggatgggggaatgttttgagggaacgtattgttttgagggaattcaaatactttggggtgaattccattgtttgga 29482804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 30444974 - 30444930
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||| ||| |||||||||||||| ||||||||| |||||||||||    
T  30444974 ttttgagggaattcaaatactttgaggtgaattccattgtttgga 30444930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 34008823 - 34008867
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||| ||| |||||||||||||| ||||||||| |||||||||||    
T  34008823 ttttgagggaattcaaatactttgaggtgaattccattgtttgga 34008867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 13017782 - 13017865
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||| |  |||||||||||  ||| ||||||||||||| |||||||||||||| ||||||||| |||||||||||    
T  13017782 gtgtgtttggatgtggaaatgttttgagggaatgtaatattttaagggaattcaaatactttgaggtgaattccattgtttgga 13017865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 769039 - 769122
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  |||||||| |||||||||||    
T  769039 gtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtgaattccattgtttgga 769122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 1583879 - 1583796
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  |||||||| |||||||||||    
T  1583879 gtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtgaattccattgtttgga 1583796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 2274858 - 2274775
Alignment:
Q  213 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||  ||||||||| ||| ||||  |||||||||||| |||||||||| |||||| | |||| |||||||||||    
T  2274858 gtgtgtttggatgaaggaatgtttcgaggtaatacaatattttaagggaattcaaatatttttagatcaattccattgtttgga 2274775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 11141308 - 11141391
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  |||||||| |||||||||||    
T  11141308 gtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtgaattacattgtttgga 11141391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 33189327 - 33189244
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  |||||||| |||||||||||    
T  33189327 gtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtgaattccattgtttgga 33189244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 304
Target Start/End: Original strand, 30698298 - 30698377
Alignment:
Q  225 gggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 304  Q
    ||||||||||||||  ||| |||| |||| | | ||||||||||| || |||||||||||||||||||||  ||||||||    
T  30698298 gggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtgaatttcattgtttggataatagtttg 30698377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 31613849 - 31613903
Alignment:
Q  245 taatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggata 299  Q
    ||||||||| |||||||||||||| ||||| || |||||||||||||||| ||||    
T  31613849 taatattttgaggaaattcaaatatttttaagtaaatttcattgtttggatgata 31613903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 10480122 - 10480205
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| |||| ||   ||| |||||||||||||| ||||||||| |||||||||||    
T  10480122 gtgtgtttggatgggggaatgttttgagggaatgtaatgttacgagggaattcaaatactttgaggtgaattccattgtttgga 10480205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 11532323 - 11532240
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  ||| ||| |||  ||| |||| |||| ||| |||||||||||||| ||||||||| |||||||||||    
T  11532323 gtgtgtttggatgggggaatatttggagggaatgtaatgttttgagggaattcaaatactttgaggtgaattccattgtttgga 11532240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 11793898 - 11793981
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  ||| |||||||  ||| |||| || | ||| |||||||||||||| ||||||||| |||||||||||    
T  11793898 gtgtgtttggatgggggaatattttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattccattgtttgga 11793981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 35047749 - 35047666
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  |||||||| || ||||||||    
T  35047749 gtgtgtttggatgggggaatgttttgaggaaatgtattgttttaagggaattcaaatactttggggtgaattccaatgtttgga 35047666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 293
Target Start/End: Complemental strand, 7167689 - 7167655
Alignment:
Q  259 aattcaaatacttttaggtgaatttcattgtttgg 293  Q
    |||||||||||||| ||||||||||||||||||||    
T  7167689 aattcaaatactttgaggtgaatttcattgtttgg 7167655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 304
Target Start/End: Complemental strand, 7228082 - 7227989
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 304  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| | | |||| |||||| || |||| ||||||||||||||||  ||||||||    
T  7228082 gtgtgtttggatggggaaatgttttgagagaatgtaatgttttgaaggaatttaaataccttgaggtaaatttcattgtttggataatagtttg 7227989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 27033493 - 27033574
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 292  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||  ||||||||    
T  27033493 gtgtgtttggatgggggaatgttttgagagaatgtaatgttttgagggaattcaactactttgaggtgaattctattgtttg 27033574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 11606730 - 11606799
Alignment:
Q  225 gggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||   ||| ||||||||| | | ||| |||||||||| |||||||||| ||||||||||    
T  11606730 gggaatgttttgaaggaatgtaatattttcaaggaatacaaatactttgaggtgaatttaattgtttgga 11606799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 1730091 - 1730139
Alignment:
Q  246 aatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||| ||| |||| ||||||||| || ||||||||||||||||||    
T  1730091 aatattttgagggaatttaaatactttgagatgaatttcattgtttgga 1730139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 3092300 - 3092368
Alignment:
Q  226 ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||  ||| || | |||| ||||||||||||||||||  ||| |||| |||||||||||    
T  3092300 ggaatgttttgagggaatgtattgttttgaggaaattcaaatactttggggtaaattccattgtttgga 3092368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 8736472 - 8736428
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||| ||| |||||||||||||| ||||||||| |||||||||||    
T  8736472 ttttgagggaattcaaatactttgaggtgaattccattgtttgga 8736428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 11716411 - 11716482
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatt 282  Q
    ||||||||||||||  ||||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||    
T  11716411 gtgtgtttggatggaagaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaatt 11716482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 14365703 - 14365774
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatt 282  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||    
T  14365703 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaatt 14365774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 14537202 - 14537273
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatt 282  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||    
T  14537202 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggtaattcaactactttgaggtgaatt 14537273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 32840223 - 32840179
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||| ||| |||| ||||||||| |||||||||||||||||||||    
T  32840223 ttttgagggaatttaaatactttgaggtgaatttcattgtttgga 32840179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 305
Target Start/End: Original strand, 51847854 - 51847948
Alignment:
Q  212 tgtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttgg 305  Q
    |||||||||||||||  |||||||||||| |||| |||| |||||| ||||||||||||| |||||||||||| ||| ||||||| |||| |||||    
T  51847854 tgtgtgtttggatggaggaatgttttgaggtaatgtaatgttttaaagaaattcaaatac-tttaggtgaattccatcgtttggatgataatttgg 51847948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 224 - 294
Target Start/End: Original strand, 946929 - 946999
Alignment:
Q  224 tgggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  ||| || |||||| |||||||||||||||| | ||||||||| |||||||||||    
T  946929 tgggaatgttttgagggaatgtattattttgaggaaattcaaatactatgaggtgaattccattgtttgga 946999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 24273290 - 24273207
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| |||| || | ||| |||||||||||||| ||||||||| |||||||||||    
T  24273290 gtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattccattgtttgga 24273207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 26501149 - 26501066
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||||||||||||  ||| |||| |||| ||| |||||||||||||| | ||||||| |||||||||||    
T  26501149 gtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaaatactttgatgtgaattccattgtttgga 26501066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 511 - 571
Target Start/End: Original strand, 46763196 - 46763256
Alignment:
Q  511 gaagcaggagtagtttgtctgagagagagccaagcacaatcaaaaagagcaaaacaggtga 571  Q
    |||| |||| ||| || ||||||||||| ||| ||||||||||||||||||||||||||||    
T  46763196 gaagtaggaatagcttctctgagagagaaccatgcacaatcaaaaagagcaaaacaggtga 46763256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 47165282 - 47165199
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||   |||||||||||  ||| |||| |||| ||| |||||||||||||| ||||||||| |||||||||||    
T  47165282 gtgtgtttggatggagaaatgttttgaggaaatgtaatgttttgagggaattcaaatactttaaggtgaattccattgtttgga 47165199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 213 - 299
Target Start/End: Original strand, 8224771 - 8224859
Alignment:
Q  213 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggata 299  Q
    |||||||||||||  |||||||||||||  ||| |||| |||| ||| |||| ||||||||| | ||||||| ||||||||||| ||||    
T  8224771 gtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaattgaaatactttgatgtgaattccattgtttggatgata 8224859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 47820255 - 47820299
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||| ||||||||||||||  ||||||||||||||||||||    
T  47820255 ttttaagggaattcaaatactttagggtgaatttcattgtttgga 47820299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 6470756 - 6470675
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 292  Q
    ||||||||||||||  ||||||||||||  ||| |||| |||| ||| ||||||||| |||| ||||| ||| |||||||||    
T  6470756 gtgtgtttggatggcggaatgttttgagagaatgtaatgttttgagggaattcaaattctttgaggtggattccattgtttg 6470675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 15034662 - 15034743
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 292  Q
    ||||||||||||||  ||||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||  ||||||||    
T  15034662 gtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaactactttaaggtgaattctattgtttg 15034743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 43623048 - 43622967
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 292  Q
    |||||||||||||||  ||||||||||   ||| |||| |||| || ||||| ||||||||| |||||||||||||| ||||    
T  43623048 gtgtgtttggatgggggaatgttttgatggaatgtaatgttttgagaaaatttaaatactttgaggtgaatttcattatttg 43622967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 34003512 - 34003557
Alignment:
Q  259 aattcaaatacttttaggtgaatttcattgtttggaggatagtttg 304  Q
    |||||||||||||| ||||||||| ||||||||||| |||| ||||    
T  34003512 aattcaaatactttgaggtgaattccattgtttggatgataatttg 34003557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 290
Target Start/End: Complemental strand, 37037020 - 37036940
Alignment:
Q  212 tgtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtt 290  Q
    ||||||||||||||  |||||||||||||| ||| |||| |||| ||| |||||||||| ||| | || |||| |||||||    
T  37037020 tgtgtgtttggatgagggaatgttttgagtgaatgtaatgttttgagggaattcaaatattttgatgtaaattccattgtt 37036940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 37448457 - 37448388
Alignment:
Q  225 gggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||| |||| |||| ||| |||| ||||||||| | ||||||| |||||||||||    
T  37448457 gggaatgttttgagagaatgtaatgttttgagggaatttaaatactttgatgtgaattccattgtttgga 37448388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 44570697 - 44570774
Alignment:
Q  227 gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 304  Q
    ||||||||||||  ||| |||| |||| | | ||||||||||| || ||||||||| |||||||||||  ||||||||    
T  44570697 gaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtgaattccattgtttggataatagtttg 44570774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 15034815 - 15034744
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatt 282  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||    
T  15034815 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaatt 15034744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 15467994 - 15467950
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||| ||||||||||||||  |||||||| |||||||||||    
T  15467994 ttttaagggaattcaaatactttggggtgaattccattgtttgga 15467950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 23536070 - 23536141
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatt 282  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||    
T  23536070 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaatt 23536141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 292
Target Start/End: Original strand, 34756432 - 34756511
Alignment:
Q  215 gtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 292  Q
    |||||||||||||  |||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||  ||||||||    
T  34756432 gtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaattctattgtttg 34756511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 50471792 - 50471836
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||| ||| |||||||||||||| |||||||||| ||||||||||    
T  50471792 ttttgagggaattcaaatactttcaggtgaattttattgtttgga 50471836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 213 - 304
Target Start/End: Complemental strand, 25189282 - 25189189
Alignment:
Q  213 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 304  Q
    |||||||||||||  ||||||||||||| ||||  ||| |||| ||| |||||||||||||| | ||||||||||||||||||| |||| ||||    
T  25189282 gtgtgtttggatgtgggaatgttttgaggtaatgcaatgttttgagggaattcaaatactttgaagtgaatttcattgtttggatgataatttg 25189189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 23548667 - 23548584
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||||||||||||  ||| || | |||| ||||||||||||||||||  |||||||| |||||||||||    
T  23548667 gtgtgtttggatggaggaatgttttgagggaatgtattgttttgaggaaattcaaatactttggggtgaattccattgtttgga 23548584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 26162193 - 26162110
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| |||| || | ||| |||||||||||||| ||||||||| |||||||||||    
T  26162193 gtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattccattgtttgga 26162110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 39342698 - 39342615
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  |||||||| |||||||||||    
T  39342698 gtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtgaattccattgtttgga 39342615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 31632725 - 31632806
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 292  Q
    |||||||||||||||  |||||||||||  ||| |||| || | ||| |||||||||||||| ||||||||| |||||||||    
T  31632725 gtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattccattgtttg 31632806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 19865571 - 19865530
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgttt 291  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  19865571 ttttgaggaaattcaaatactttgaggtgaatttcattgttt 19865530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 6498821 - 6498738
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||||||||||||  ||| |||| |||| ||| |||||||||||||| | ||||||  |||||||||||    
T  6498821 gtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaaatactttgatgtgaataccattgtttgga 6498738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 14603318 - 14603235
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  ||| |||| |||||||||||    
T  14603318 gtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtaaattccattgtttgga 14603235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 18789302 - 18789219
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  |||| |||||||  ||| |||| || | ||| |||||||||||||| ||||||||| |||||||||||    
T  18789302 gtgtgtttggatggaggaatattttgagagaatataatgttatgagggaattcaaatactttaaggtgaattccattgtttgga 18789219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 28539224 - 28539141
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| || | |||| ||| ||||||||||||||  |||||||| |||||||||||    
T  28539224 gtgtgtttggatgggggaatgttttgagggaatgtattgttttgagggaattcaaatactttggggtgaattccattgtttgga 28539141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 35455807 - 35455890
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  ||| |||| |||||||||||    
T  35455807 gtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtaaattccattgtttgga 35455890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 35777011 - 35776928
Alignment:
Q  213 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||  |||||||||||||  ||| |||| || | ||| |||||||||||||| ||||||||| |||| ||||||    
T  35777011 gtgtgtttggatgagggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattccattatttgga 35776928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 5976616 - 5976549
Alignment:
Q  225 gggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 292  Q
    |||||||||||||| |||| |||||||||   | ||| |||||| |||||| ||||||||||||||||    
T  5976616 gggaatgttttgaggtaatataatattttgtcgtaatacaaatatttttagctgaatttcattgtttg 5976549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 23455302 - 23455220
Alignment:
Q  214 tgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||  |||||||||||||  ||| || | |||| ||| ||||||||||||||  |||||||| |||||||||||    
T  23455302 tgtgtttggatgagggaatgttttgagggaatgtattgttttgagggaattcaaatactttggggtgaattccattgtttgga 23455220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 30629061 - 30629143
Alignment:
Q  214 tgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  |||||||||||  ||| || | |||||||  |||| |||||||||  ||||||||||||||||||||    
T  30629061 tgtgtttggatgggggaatgttttgagggaatgtattgttttaagagaatttaaatactttggggtgaatttcattgtttgga 30629143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 29065822 - 29065903
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 292  Q
    ||||||||||||||  ||||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||  ||||||||    
T  29065822 gtgtgtttggatggatgaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaattctattgtttg 29065903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 30080818 - 30080764
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 304  Q
    |||| |||||||| ||||||||| ||||||||| ||||||||||| |||| ||||    
T  30080818 ttttgaggaaatttaaatactttcaggtgaattccattgtttggatgataatttg 30080764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 29639257 - 29639188
Alignment:
Q  225 gggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||| ||  ||| |||| || | |||||||||||||| ||| ||||||||| |||||||||||    
T  29639257 gggaatgttttcagggaatgtaatgttatgaggaaattcaaatattttgaggtgaattccattgtttgga 29639188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 304
Target Start/End: Complemental strand, 34115702 - 34115610
Alignment:
Q  214 tgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 304  Q
    |||||||||||||  |||||||||||||||||  ||| |||| ||  ||||||||| |||||| || ||  |||||||||||  |||||||||    
T  34115702 tgtgtttggatggaggaatgttttgagttaataaaatgttttgagataattcaaatccttttacgtaaacctcattgtttgggtgatagtttg 34115610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 291
Target Start/End: Original strand, 40110740 - 40110820
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgttt 291  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||  |||||||    
T  40110740 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttaaggtgaattctattgttt 40110820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 9784987 - 9784904
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||||||||||||  ||| || | |||| ||| ||||||||||||||  |||||| | |||||||||||    
T  9784987 gtgtgtttggatggaggaatgttttgagggaatgtattgttttgagggaattcaaatactttggggtgaaatccattgtttgga 9784904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 32650615 - 32650659
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||| ||| |||||||||||||| |||||||||| ||||||||||    
T  32650615 ttttgagggaattcaaatactttgaggtgaattttattgtttgga 32650659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 45984382 - 45984426
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||| |||||||||||||| |||||||||  ||||||||||    
T  45984382 ttttaagggaattcaaatactttgaggtgaattcaattgtttgga 45984426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 45988742 - 45988786
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||| |||||||||||||| |||||||||  ||||||||||    
T  45988742 ttttaagggaattcaaatactttgaggtgaattcaattgtttgga 45988786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 50168668 - 50168596
Alignment:
Q  222 gatgggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||||| |||| |||| |||| |||||| ||||||| |||||| |||||| |||||||||||    
T  50168668 gatgggaatgttttgaggtaatgtaatgttttgaggaaactcaaataattttagctgaattccattgtttgga 50168596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 53129912 - 53129829
Alignment:
Q  213 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||  ||||||||| |||  ||| |||| |||||||| ||||||||||||||  |||||||| |||||||||||    
T  53129912 gtgtgtttggatgagggaatgtttcgagggaatgtaatgttttaagggaattcaaatactttggggtgaattccattgtttgga 53129829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 9007476 - 9007441
Alignment:
Q  259 aattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||||||||||||||||||||||||    
T  9007476 aattcaaatacttttaggtgaatttcattgtttgga 9007441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 21307600 - 21307518
Alignment:
Q  214 tgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||||||||| |  ||| |||| |||| ||| |||||||||||||| ||||||||| |||||||||||    
T  21307600 tgtgtttggatgggggaatgttttgcgggaatgtaatgttttgagggaattcaaatactttgaggtgaattccattgtttgga 21307518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 46635860 - 46635926
Alignment:
Q  213 gtgtgtttggatgggaa--tgttttgagttaatttaatattttaaggaaattcaaatacttttaggt 277  Q
    ||||||||||||| |||  ||||||||| |||| |||| |||| |||||||||||||||||||||||    
T  46635860 gtgtgtttggatgagaaaatgttttgagctaatgtaatgttttgaggaaattcaaatacttttaggt 46635926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 304
Target Start/End: Original strand, 47767435 - 47767528
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 304  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| | | ||||||||||| || ||||||||| |||||||||||  ||||||||    
T  47767435 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtgaattacattgtttggataatagtttg 47767528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 19475834 - 19475902
Alignment:
Q  226 ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||  ||| |||| || | ||| |||||||||||||| ||||||||| |||||||||||    
T  19475834 ggaatgttttgagggaatgtaatgttatgaggtaattcaaatactttgaggtgaattccattgtttgga 19475902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 53470498 - 53470415
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||| |  |||||||||||  ||| || | |||| ||| ||||||||||||||  ||||||||||||||||||||    
T  53470498 gtgtgtttggatgaggaaatgttttgagggaatctattgttttgagggaattcaaatactttggggtgaatttcattgtttgga 53470415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 37054397 - 37054479
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgg 293  Q
    |||||||||||||||  |||||||| ||  ||| |||| |||| | | ||||||||||| || ||||||||||||||||||||    
T  37054397 gtgtgtttggatgggggaatgttttaagggaatgtaatgttttgaaggaattcaaataccttgaggtgaatttcattgtttgg 37054479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 42006022 - 42005940
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgg 293  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| | | |||| |||||| || ||||||||||||||||||||    
T  42006022 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaaggaatttaaataccttgaggtgaatttcattgtttgg 42005940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 304
Target Start/End: Original strand, 7302349 - 7302442
Alignment:
Q  213 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 304  Q
    |||||||||||||  |||||||||||||  ||| |||| |||| | | |||||| |||| || ||||||||| |||||||||||  ||||||||    
T  7302349 gtgtgtttggatgagggaatgttttgagagaatgtaatgttttgaaggaattcagataccttgaggtgaattccattgtttggataatagtttg 7302442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 304
Target Start/End: Original strand, 30766571 - 30766649
Alignment:
Q  226 ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 304  Q
    |||||||||||||  ||| |||| |||| | | ||||||||||| || ||||||||| |||||||||||  ||||||||    
T  30766571 ggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtgaattccattgtttggataatagtttg 30766649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 44436261 - 44436342
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 292  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||||||||||| || ||| |||||||||  ||||||||    
T  44436261 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggaaattcaactattttaaggtgaattctattgtttg 44436342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 9129500 - 9129429
Alignment:
Q  213 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatt 282  Q
    |||||||||||||  |||||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||    
T  9129500 gtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaatt 9129429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 9137607 - 9137536
Alignment:
Q  213 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatt 282  Q
    |||||||||||||  |||||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||    
T  9137607 gtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaatt 9137536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 26323398 - 26323442
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||| ||| |||||||||||||||||||||||| | |||||||||    
T  26323398 ttttgaggtaattcaaatacttttaggtgaattccgttgtttgga 26323442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 34396555 - 34396483
Alignment:
Q  232 ttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 304  Q
    |||||||  ||| |||||||  |||| |||||||||||||| |||| ||||||||| |||||| |||| ||||    
T  34396555 ttttgagggaatgtaatattacaagggaattcaaatactttgaggtaaatttcattctttggatgataatttg 34396483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 36398058 - 36397979
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtt 290  Q
    |||||||||||||||  |||||||||||  ||| || | |||| ||| ||||||||||||||  |||||||| |||||||    
T  36398058 gtgtgtttggatgggggaatgttttgagggaatgtattgttttgagggaattcaaatactttggggtgaattccattgtt 36397979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 44692978 - 44692907
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatt 282  Q
    ||||||||||||||  ||||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||    
T  44692978 gtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaatt 44692907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 46672872 - 46672801
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatt 282  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||    
T  46672872 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaatt 46672801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 48947608 - 48947691
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||||||||||||  ||| || | |||| ||  ||||||||||||||  |||||||| |||||||||||    
T  48947608 gtgtgtttggatggaagaatgttttgagggaatgtattgttttgagagaattcaaatactttggggtgaattccattgtttgga 48947691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 4568 - 4485
Alignment:
Q  213 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||  |||||||||||||  ||| |||| |||| |||||||||||||| |||  |||||||| |||||||||||    
T  4568 gtgtgtttggatgagggaatgttttgagggaatataatgttttgaggaaattcaaatattttggggtgaattccattgtttgga 4485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 5212 - 5129
Alignment:
Q  213 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||  |||||||||||||  ||| |||| |||| |||||||||||||| |||  |||||||| |||||||||||    
T  5212 gtgtgtttggatgagggaatgttttgagggaatataatgttttgaggaaattcaaatattttggggtgaattccattgtttgga 5129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 287
Target Start/End: Complemental strand, 19854 - 19779
Alignment:
Q  213 gtgtgtttggatggga-atgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcatt 287  Q
    |||||||||||||||  ||||||||||  ||| |||| ||||||| ||||||||||||||| ||||||||| ||||    
T  19854 gtgtgtttggatgggggatgttttgagggaatgtaatgttttaagaaaattcaaatactttgaggtgaattacatt 19779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 7154 - 7237
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||  ||||||||||||  ||| || | |||||||| ||||||||||||||   ||||||| |||||||||||    
T  7154 gtgtgtttggatggaggaatgttttgagggaatgtattgttttaagggaattcaaatactttggagtgaattccattgtttgga 7237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 4093 - 4161
Alignment:
Q  226 ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    |||||||||||||  ||| |||| |||| ||| |||||||||||||| |||||||||  ||||||||||    
T  4093 ggaatgttttgagagaatgtaatgttttgagggaattcaaatactttgaggtgaattctattgtttgga 4161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 16405 - 16361
Alignment:
Q  250 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||||||||||||| ||| |||| |||| |||||||||||    
T  16405 ttttaaggaaattcaaatattttgaggtaaattccattgtttgga 16361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 82946 - 83017
Alignment:
Q  213 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatt 282  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||    
T  82946 gtgtgtttggatgggtgaatgttttgagggaatgtaatgttttgagggaattcaactactttaaggtgaatt 83017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 10889 - 10972
Alignment:
Q  213 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 294  Q
    ||||||||| ||||  ||||||||| ||  ||| |||| |||| ||| |||||||||||||| | ||||||| |||||||||||    
T  10889 gtgtgtttgaatggaagaatgttttaagggaatgtaatgttttgagggaattcaaatactttgacgtgaattccattgtttgga 10972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University