View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2836_high_4 (Length: 461)
Name: NF2836_high_4
Description: NF2836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2836_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 29 - 443
Target Start/End: Original strand, 4776410 - 4776824
Alignment:
| Q |
29 |
aggtcccctccagtaatatatctcttttatttttcttaagagcattaaatattcttatataacaacctaaaaagctagtgcaaaacacacaaaaaatgat |
128 |
Q |
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| T |
4776410 |
aggtcccctccagtaatatatctcttttatttttcttaagagcattaaatattcttatataacaacctaaaaagctagtgcaaaacacacaaaaaatgat |
4776509 |
T |
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| Q |
129 |
ggctagtgaaggttggccagagccagtgattagagtccaagccttagctgaaagtggcataagctcaatccctcaacatttcatcaaaccaaaatcccaa |
228 |
Q |
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| T |
4776510 |
ggctagtgaaggttggccagagccagtgattagagtccaagccttagctgaaagtggcataagctcaatccctcaacatttcatcaaaccaaaatcccaa |
4776609 |
T |
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| Q |
229 |
agacctaccaaaacaaactctttcactagccaaacttttcatcatgttcatgatgaaaacaacaagaataacatcaatattccagtcattgatttacaac |
328 |
Q |
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| T |
4776610 |
agacctaccaaaacaaactctttcactagccaaacttttcatcatgttcatgatgaaaacaacaagaataacatcaatattccagtcattgatttacaac |
4776709 |
T |
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| Q |
329 |
acttatacggcgaggacgagaagctccgtgaggagacgctaaagcgcgtctcggaggcgtgtagagaatggggattcttccaagttttgaaccatggagt |
428 |
Q |
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| T |
4776710 |
acttatacggcgaggacgagaagctccgcgaggagacgctaaagcgcgtctcggaggcgtgtagagaatggggattcttccaagttttgaaccatggagt |
4776809 |
T |
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| Q |
429 |
tagtcatgacttgat |
443 |
Q |
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| T |
4776810 |
tagtcatgacttgat |
4776824 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 25179685 - 25179645
Alignment:
| Q |
161 |
gagtccaagccttagctgaaagtggcataagctcaatccct |
201 |
Q |
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| T |
25179685 |
gagtccaagccttagctgaaagtggcctaacctcaatccct |
25179645 |
T |
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