View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2836_low_10 (Length: 363)

Name: NF2836_low_10
Description: NF2836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2836_low_10
NF2836_low_10
[»] chr7 (27 HSPs)
chr7 (8-108)||(7483518-7483620)
chr7 (151-218)||(7483418-7483485)
chr7 (8-87)||(7490291-7490372)
chr7 (283-341)||(7483306-7483364)
chr7 (151-215)||(31309724-31309788)
chr7 (160-218)||(40358462-40358520)
chr7 (13-80)||(7497995-7498066)
chr7 (160-216)||(678634-678690)
chr7 (151-215)||(10040844-10040908)
chr7 (151-218)||(3584120-3584187)
chr7 (167-218)||(13640921-13640972)
chr7 (160-215)||(24389840-24389895)
chr7 (151-218)||(31177348-31177415)
chr7 (160-218)||(5789212-5789270)
chr7 (161-218)||(14625130-14625187)
chr7 (166-218)||(9059333-9059385)
chr7 (155-202)||(9059873-9059920)
chr7 (151-218)||(13703286-13703353)
chr7 (155-202)||(35791927-35791974)
chr7 (160-218)||(2475405-2475462)
chr7 (151-197)||(12650708-12650754)
chr7 (160-218)||(35070963-35071021)
chr7 (160-218)||(35079622-35079680)
chr7 (181-218)||(40659468-40659505)
chr7 (166-218)||(7806716-7806768)
chr7 (167-211)||(21819563-21819607)
chr7 (166-218)||(45266333-45266383)
[»] chr8 (15 HSPs)
chr8 (151-214)||(15920041-15920104)
chr8 (151-218)||(35173374-35173441)
chr8 (160-218)||(3539288-3539346)
chr8 (160-215)||(7975952-7976007)
chr8 (153-218)||(4205180-4205245)
chr8 (166-218)||(29038013-29038065)
chr8 (151-214)||(11439092-11439155)
chr8 (167-201)||(4438287-4438321)
chr8 (160-218)||(6235040-6235098)
chr8 (181-215)||(19341860-19341894)
chr8 (160-218)||(28622295-28622353)
chr8 (151-214)||(32161913-32161978)
chr8 (185-218)||(2442257-2442290)
chr8 (160-215)||(9184102-9184154)
chr8 (156-200)||(11903573-11903617)
[»] chr2 (10 HSPs)
chr2 (151-218)||(10886527-10886594)
chr2 (160-218)||(44959609-44959667)
chr2 (151-215)||(14690129-14690193)
chr2 (160-218)||(20110973-20111031)
chr2 (165-218)||(9045231-9045284)
chr2 (155-215)||(16568245-16568305)
chr2 (165-218)||(1743440-1743493)
chr2 (161-218)||(30610325-30610382)
chr2 (171-216)||(45271344-45271389)
chr2 (160-200)||(38801692-38801732)
[»] chr5 (15 HSPs)
chr5 (151-218)||(39178154-39178221)
chr5 (165-218)||(17704299-17704352)
chr5 (155-215)||(31202017-31202077)
chr5 (151-218)||(1592081-1592148)
chr5 (160-218)||(9666148-9666206)
chr5 (164-214)||(11487548-11487598)
chr5 (160-218)||(13998645-13998703)
chr5 (163-199)||(26917772-26917808)
chr5 (164-215)||(7457194-7457245)
chr5 (151-218)||(27175148-27175215)
chr5 (165-215)||(27598334-27598384)
chr5 (160-196)||(25536961-25536997)
chr5 (165-201)||(38629280-38629316)
chr5 (166-214)||(39850394-39850442)
chr5 (175-215)||(42522744-42522784)
[»] chr4 (9 HSPs)
chr4 (151-219)||(4815865-4815933)
chr4 (164-218)||(7712943-7712997)
chr4 (151-197)||(10981668-10981714)
chr4 (151-217)||(56084820-56084886)
chr4 (160-216)||(12294308-12294364)
chr4 (151-218)||(7456660-7456727)
chr4 (151-214)||(49308251-49308314)
chr4 (160-202)||(28915579-28915621)
chr4 (156-197)||(28715451-28715492)
[»] chr3 (18 HSPs)
chr3 (151-214)||(18955811-18955873)
chr3 (161-215)||(19578670-19578724)
chr3 (160-218)||(37681335-37681393)
chr3 (156-210)||(38869878-38869932)
chr3 (164-201)||(22354755-22354792)
chr3 (167-215)||(14771277-14771325)
chr3 (179-215)||(34804379-34804415)
chr3 (160-218)||(35368309-35368364)
chr3 (160-218)||(20244363-20244422)
chr3 (160-214)||(2699525-2699579)
chr3 (181-215)||(6833897-6833931)
chr3 (160-218)||(17035220-17035278)
chr3 (160-218)||(17583197-17583255)
chr3 (164-202)||(18721355-18721393)
chr3 (164-214)||(21960501-21960550)
chr3 (151-201)||(39948865-39948915)
chr3 (160-201)||(53056338-53056379)
chr3 (166-218)||(34666973-34667025)
[»] chr1 (8 HSPs)
chr1 (151-211)||(4968729-4968789)
chr1 (151-201)||(42560996-42561046)
chr1 (151-194)||(8454457-8454500)
chr1 (151-218)||(11067115-11067182)
chr1 (167-214)||(14487108-14487155)
chr1 (160-199)||(33578791-33578830)
chr1 (151-218)||(40368047-40368114)
chr1 (166-218)||(40780797-40780849)
[»] scaffold1017 (1 HSPs)
scaffold1017 (151-218)||(2066-2133)
[»] scaffold0013 (2 HSPs)
scaffold0013 (160-215)||(97002-97057)
scaffold0013 (152-218)||(93722-93788)
[»] chr6 (11 HSPs)
chr6 (152-219)||(4119143-4119210)
chr6 (151-218)||(20469596-20469663)
chr6 (151-214)||(34672618-34672681)
chr6 (155-201)||(5493024-5493070)
chr6 (161-218)||(11573366-11573423)
chr6 (166-218)||(2536577-2536629)
chr6 (162-218)||(23659230-23659286)
chr6 (165-215)||(12185322-12185372)
chr6 (160-218)||(25342101-25342159)
chr6 (167-215)||(22968730-22968778)
chr6 (167-215)||(23819615-23819663)
[»] scaffold0025 (1 HSPs)
scaffold0025 (160-218)||(11658-11715)
[»] scaffold0003 (1 HSPs)
scaffold0003 (151-215)||(226421-226484)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 7483620 - 7483518
Alignment:
Q  8 ccaagaatatagcattttgtttctaactcaaactattttcaaggactaacttaaaaccttatcttaaaggtacatctata--ttatatataaagaaaata 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  7483620 ccaacaatatagcattttgtttctaactcaaactattttcaaggactaacttaaaaccttatcttaaaggtacatctatactatatatataaagaaaata 7483521  T
Q  106 gcc 108  Q
    |||    
T  7483520 gcc 7483518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 7483485 - 7483418
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7483485 attctaatcatacccttaaacaagttttattataataatgttatattgttgacgttattaaaaaagat 7483418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 7490372 - 7490291
Alignment:
Q  8 ccaagaatatagcattttgtttctaactcaaac--tattttcaaggactaacttaaaaccttatcttaaaggtacatctata 87  Q
    |||| |||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  7490372 ccaacaatatagcattttgtttctaactcaaaaaatatttccaaggactaacttaaaaccttatcttaaaggtacatatata 7490291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 7483364 - 7483306
Alignment:
Q  283 tatggtttgttgagtttcttacattcgaaaaagtgtatcccacctttatattaatagaa 341  Q
    |||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  7483364 tatgatttgttgagtttcttacatttgaaaaagtgtatcccacctatatattaatagaa 7483306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 31309724 - 31309788
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaa 215  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||  | ||||||||||    
T  31309724 attctaattatacccttaaacaaattttattatattaatgttatattgttggtggtattaaaaaa 31309788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 40358462 - 40358520
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||||||||||||||  ||||| |||||||||||||||| |||||||||||||||    
T  40358462 atacccttaaacaaattttcctataacaatgttatattgttgatgttattaaaaaagat 40358520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 7498066 - 7497995
Alignment:
Q  13 aatatagcattttgtttctaactc--aaactattttcaaggactaactt--aaaaccttatcttaaaggtac 80  Q
    |||||| |||||||||| |||| |  |||||||||||||||||||||||  |||||||||||||||||||||    
T  7498066 aatataacattttgtttgtaacactaaaactattttcaaggactaacttaaaaaaccttatcttaaaggtac 7497995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 678634 - 678690
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaag 216  Q
    ||||| ||||| |||||||  |||||||||||||||||||||| |||||||||||||    
T  678634 atacctttaaataaatttttgtataataatgttatattgttgatgttattaaaaaag 678690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 10040908 - 10040844
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaa 215  Q
    |||||||| |||||||||||||||||||  ||||| |||||||||||||||  |||||| |||||    
T  10040908 attctaattatacccttaaacaaattttcctataaaaatgttatattgttggtgttattgaaaaa 10040844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 3584120 - 3584187
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||| ||| |||| ||||| |||||||| |||||||||| |||||||||||  |||||||||||||||    
T  3584120 attccaattatacgcttaagcaaattttcttataataatattatattgttggtgttattaaaaaagat 3584187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 13640921 - 13640972
Alignment:
Q  167 taaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||||||| ||||||||||||||||||||||   ||||||||||||||    
T  13640921 taaacaaattttgttataataatgttatattgttggttttattaaaaaagat 13640972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 24389840 - 24389895
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaa 215  Q
    |||||| |||||||||||| |||||| |||||||||||||| | ||||||||||||    
T  24389840 atacccataaacaaattttcttataacaatgttatattgttaatgttattaaaaaa 24389895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 31177415 - 31177348
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||| |||||  |||||||||||| ||||||||||||||||  ||||  |||||||||||||||    
T  31177415 attctaattatacctataaacaaattttcttataataatgttataccgttggtgttattaaaaaagat 31177348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 5789212 - 5789270
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||| |||||||||||| ||||| ||||||||||||||||  | |||||||||||||    
T  5789212 atacccataaacaaattttcttatattaatgttatattgttggtggtattaaaaaagat 5789270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 14625187 - 14625130
Alignment:
Q  161 tacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||||| |||||||  ||||| ||||||||||| |||| |||||||||||||||    
T  14625187 tacccttaaataaattttcctataacaatgttatattattgatgttattaaaaaagat 14625130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 9059385 - 9059333
Alignment:
Q  166 ttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||||||||  |||| ||||||||||||||||  |||||||||||||||    
T  9059385 ttaaacaaatttttctatattaatgttatattgttggtgttattaaaaaagat 9059333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 9059873 - 9059920
Alignment:
Q  155 taatcatacccttaaacaaattttattataataatgttatattgttga 202  Q
    ||||||||| ||||||||||||||  |||| |||||||||||||||||    
T  9059873 taatcatacacttaaacaaattttcctatattaatgttatattgttga 9059920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 13703286 - 13703353
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||| ||| ||| ||||||||||||||| |||||||||| ||||||||||    ||||||||||||||    
T  13703286 attccaattatatccttaaacaaattttcttataataatcttatattgttagttttattaaaaaagat 13703353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 35791927 - 35791974
Alignment:
Q  155 taatcatacccttaaacaaattttattataataatgttatattgttga 202  Q
    |||| ||||| |||||||||||||  ||||||||||||||||||||||    
T  35791927 taattatacctttaaacaaattttcctataataatgttatattgttga 35791974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 2475405 - 2475462
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    ||||||||||||||||||| |||| |||| ||||||||||||  |||| ||||||||||    
T  2475405 atacccttaaacaaatttttttat-ataacgttatattgttggtgttactaaaaaagat 2475462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 12650754 - 12650708
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatatt 197  Q
    |||||||| |||| |||||||||||||| |||||||||| |||||||    
T  12650754 attctaattatactcttaaacaaatttttttataataattttatatt 12650708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 35071021 - 35070963
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    ||||||||||| |||| ||  |||||||||||||||||||||  || ||||||||||||    
T  35071021 atacccttaaataaatatttctataataatgttatattgttgttgtaattaaaaaagat 35070963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 35079680 - 35079622
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    ||||||||||||||||  |  |||||||||||||||||||||  || ||||||||||||    
T  35079680 atacccttaaacaaataattctataataatgttatattgttgttgtaattaaaaaagat 35079622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 40659505 - 40659468
Alignment:
Q  181 tataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||||||||||||||||  |||||||||||||||    
T  40659505 tataataatgttatattgttggtgttattaaaaaagat 40659468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 7806716 - 7806768
Alignment:
Q  166 ttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    ||||| ||||||| || ||| |||||||||||||||  |||||||||||||||    
T  7806716 ttaaataaattttgttgtaacaatgttatattgttggtgttattaaaaaagat 7806768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 21819607 - 21819563
Alignment:
Q  167 taaacaaattttattataataatgttatattgttgacgttattaa 211  Q
    ||||||||||| ||||||| |||||||| ||||||| ||||||||    
T  21819607 taaacaaatttgattataagaatgttattttgttgatgttattaa 21819563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 45266333 - 45266383
Alignment:
Q  166 ttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    ||||||||||||| ||||||||||||| ||||||||  |||||||||||||||    
T  45266333 ttaaacaaatttt-ttataataatgtt-tattgttggtgttattaaaaaagat 45266383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 15920041 - 15920104
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaa 214  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||  |||||||||||    
T  15920041 attctaattatacccttaaacaaattttcttataataatgttatattgttggtgttattaaaaa 15920104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 35173441 - 35173374
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||| |||||||||||||||| ||  ||||| |||||||||||||||| |||||||||| ||||    
T  35173441 attctaattatacccttaaacaaatgttcctataagaatgttatattgttgatgttattaaaatagat 35173374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 3539288 - 3539346
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||||||||||||||  |||||||| ||||||||||||| |||||||| ||||||    
T  3539288 atacccttaaacaaattttcatataataacgttatattgttgaggttattaataaagat 3539346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 7976007 - 7975952
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaa 215  Q
    ||||| ||||||||||||| |||||||||||| |||||||||  ||||||||||||    
T  7976007 atacctttaaacaaattttcttataataatgtcatattgttggtgttattaaaaaa 7975952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 4205245 - 4205180
Alignment:
Q  153 tctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||| |||| |||||||||||||| ||||| |||||||||||||||   | |||||||||||||    
T  4205245 tctaattatactcttaaacaaattttcttatattaatgttatattgttcgtgatattaaaaaagat 4205180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 29038065 - 29038013
Alignment:
Q  166 ttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    ||||||| |||||  |||||||||||||||||||||  |||||||||||||||    
T  29038065 ttaaacatattttcctataataatgttatattgttggtgttattaaaaaagat 29038013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 11439155 - 11439092
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaa 214  Q
    |||||||| ||||  ||||||||||||| |||||||||| ||||||| ||| |||| |||||||    
T  11439155 attctaattatacttttaaacaaattttcttataataatattatatttttggcgttgttaaaaa 11439092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 4438287 - 4438321
Alignment:
Q  167 taaacaaattttattataataatgttatattgttg 201  Q
    |||||||||||| ||||||||||||||||||||||    
T  4438287 taaacaaatttttttataataatgttatattgttg 4438321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 6235040 - 6235098
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||||||||||||||  ||||||||| ||||| |||||   ||||||||||||||    
T  6235040 atacccttaaacaaattttcatataataatattatactgttggtattattaaaaaagat 6235098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 19341860 - 19341894
Alignment:
Q  181 tataataatgttatattgttgacgttattaaaaaa 215  Q
    ||||||||||||||||||||| |||||||||||||    
T  19341860 tataataatgttatattgttggcgttattaaaaaa 19341894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 28622353 - 28622295
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||||||||| | ||  ||||||||||||||||||||   |||||||||||||||    
T  28622353 atacccttaaacaagtgttcctataataatgttatattgttatagttattaaaaaagat 28622295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 32161913 - 32161978
Alignment:
Q  151 attctaatcatacccttaaacaaattttattat--aataatgttatattgttgacgttattaaaaa 214  Q
    |||||||| |||||||||||||| |||| || |  ||||||||||||||||||  |||||||||||    
T  32161913 attctaattatacccttaaacaattttttttctgtaataatgttatattgttgttgttattaaaaa 32161978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 2442257 - 2442290
Alignment:
Q  185 ataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||||||||||||| |||||||||||||||    
T  2442257 ataatgttatattgttgatgttattaaaaaagat 2442290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 9184154 - 9184102
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaa 215  Q
    ||||||||||||||  || |||||| |||||||||||||||| |||||||||||||    
T  9184154 atacccttaaacaa--ttcattatattaatgttatattgttg-cgttattaaaaaa 9184102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 11903573 - 11903617
Alignment:
Q  156 aatcatacccttaaacaaattttattataataatgttatattgtt 200  Q
    |||||||| ||||||||||||| | |||||||||||||| |||||    
T  11903573 aatcatactcttaaacaaatttaaatataataatgttatcttgtt 11903617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 10886527 - 10886594
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||| || | ||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  10886527 attctaattattctcttaaacaatttttattataataatgttatattgttgatgttattaaaaaagat 10886594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 44959609 - 44959667
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    ||||||||||||| |||||| ||||||||||||| ||||||| |||||||| |||||||    
T  44959609 atacccttaaacatattttactataataatgttacattgttggcgttattataaaagat 44959667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 14690193 - 14690129
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaa 215  Q
    |||| ||| ||||||||||||| |||||  |||||||||||||||||||||  ||||||||||||    
T  14690193 attccaattatacccttaaacatattttcctataataatgttatattgttggtgttattaaaaaa 14690129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 20110973 - 20111031
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    ||||||||||| |||||||  ||||||||| |||||||||||  |||||||||||||||    
T  20110973 atacccttaaataaatttttatataataatattatattgttggagttattaaaaaagat 20111031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 9045284 - 9045231
Alignment:
Q  165 cttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    ||||||||||||||  ||||||||| |||| |||||| ||||||||||||||||    
T  9045284 cttaaacaaatttttatataataatattatcttgttggcgttattaaaaaagat 9045231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 16568245 - 16568305
Alignment:
Q  155 taatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaa 215  Q
    |||| ||||| ||||| |||||||  |||| ||||||||||||||||| ||||||||||||    
T  16568245 taattatacctttaaataaatttttctatactaatgttatattgttgatgttattaaaaaa 16568305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 1743440 - 1743493
Alignment:
Q  165 cttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    ||||||||||||||  ||||||||| |||||||||||  || ||||||||||||    
T  1743440 cttaaacaaatttttctataataattttatattgttgttgtaattaaaaaagat 1743493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 30610382 - 30610325
Alignment:
Q  161 tacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||| |||||||||||  |||| ||||||||||||||||  | |||||||||||||    
T  30610382 taccctgaaacaaattttcatatattaatgttatattgttggtggtattaaaaaagat 30610325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 45271389 - 45271344
Alignment:
Q  171 caaattttattataataatgttatattgttgacgttattaaaaaag 216  Q
    ||||||||  |||| |||||||||||| ||||||||||||||||||    
T  45271389 caaattttcatatattaatgttatattattgacgttattaaaaaag 45271344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 38801692 - 38801732
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgtt 200  Q
    |||||| ||||||||| || |||||||||||||||||||||    
T  38801692 atacccataaacaaatatttttataataatgttatattgtt 38801732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 39178221 - 39178154
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||| ||||||||||| |||||||  |||||||||||||||||||||| |||||||||| ||||    
T  39178221 attctaattatacccttaaataaattttcctataataatgttatattgttgatgttattaaaatagat 39178154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 17704299 - 17704352
Alignment:
Q  165 cttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    ||||||||||||||| ||||| ||||||||||| |||| |||||||||||||||    
T  17704299 cttaaacaaattttactataacaatgttatattattgatgttattaaaaaagat 17704352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 31202017 - 31202077
Alignment:
Q  155 taatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaa 215  Q
    |||| ||||||||||||||||||| |||||| |||||||||| ||||  ||||||||||||    
T  31202017 taattatacccttaaacaaattttcttataacaatgttatatcgttggtgttattaaaaaa 31202077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 1592081 - 1592148
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||| |||||||||||||||||||  |||||||||||| |||| ||   |||||||||||||||    
T  1592081 attctaattatacccttaaacaaatttttctataataatgttctattattagtgttattaaaaaagat 1592148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 9666148 - 9666206
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||||||||||| ||  |||||||||||||||||||||  || ||||||||||||    
T  9666148 atacccttaaacaaatatttctataataatgttatattgttgttgtaattaaaaaagat 9666206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 11487598 - 11487548
Alignment:
Q  164 ccttaaacaaattttattataataatgttatattgttgacgttattaaaaa 214  Q
    |||||||||||||||  ||||||||||||||||| ||| ||||||||||||    
T  11487598 ccttaaacaaattttcctataataatgttatattattggcgttattaaaaa 11487548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 13998703 - 13998645
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||||||||||||||  ||||||| |||||||||||||  |||||||||| ||||    
T  13998703 atacccttaaacaaattttcatataatagtgttatattgttggtgttattaaaatagat 13998645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 26917772 - 26917808
Alignment:
Q  163 cccttaaacaaattttattataataatgttatattgt 199  Q
    ||||||||||||||||| |||||||||||||||||||    
T  26917772 cccttaaacaaattttactataataatgttatattgt 26917808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 7457245 - 7457194
Alignment:
Q  164 ccttaaacaaattttattataataatgttatattgttgacgttattaaaaaa 215  Q
    |||| |||||||||| ||||||||||||||||||||||  ||||||| ||||    
T  7457245 ccttgaacaaattttcttataataatgttatattgttgttgttattagaaaa 7457194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 27175148 - 27175215
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||| ||| ||||| ||||||||  |||  |||||||||||||||||||||  |||||||||||||||    
T  27175148 attccaattataccattaaacaatgttttctataataatgttatattgttggtgttattaaaaaagat 27175215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 27598334 - 27598384
Alignment:
Q  165 cttaaacaaattttattataataatgttatattgttgacgttattaaaaaa 215  Q
    |||||||||||||| |||||||| |||||||||||||   |||||||||||    
T  27598334 cttaaacaaattttcttataatagtgttatattgttggtattattaaaaaa 27598384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 25536961 - 25536997
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatat 196  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  25536961 atacccttaaacaaatttttttatattaatgttatat 25536997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 38629316 - 38629280
Alignment:
Q  165 cttaaacaaattttattataataatgttatattgttg 201  Q
    ||||||||||||||  |||||||||||||||||||||    
T  38629316 cttaaacaaattttcctataataatgttatattgttg 38629280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 39850394 - 39850442
Alignment:
Q  166 ttaaacaaattttattataataatgttatattgttgacgttattaaaaa 214  Q
    ||||||||||||   |||||||||||||||||||| | |||||||||||    
T  39850394 ttaaacaaatttgtctataataatgttatattgttaaagttattaaaaa 39850442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 42522784 - 42522744
Alignment:
Q  175 ttttattataataatgttatattgttgacgttattaaaaaa 215  Q
    |||| ||||||||||||||||||||||  ||||||||||||    
T  42522784 ttttcttataataatgttatattgttggtgttattaaaaaa 42522744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 4815865 - 4815933
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagatt 219  Q
    |||| ||| |||||||||| ||||||||  |||||||||||||||||||||  ||||||||||||||||    
T  4815865 attccaattatacccttaagcaaattttcgtataataatgttatattgttggtgttattaaaaaagatt 4815933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 7712943 - 7712997
Alignment:
Q  164 ccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||    
T  7712943 ccttaaactaatttttttataataatgctatattgttgatgttattaaaaaagat 7712997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 10981714 - 10981668
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatatt 197  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  10981714 attccaattatacccttaaacaaattttcttataataatgttatatt 10981668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 56084886 - 56084820
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaaga 217  Q
    ||||||||| ||| |||||| | ||||| | ||||||||||||||||||||  ||||||||||||||    
T  56084886 attctaatcgtacacttaaatatattttttgataataatgttatattgttggtgttattaaaaaaga 56084820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 12294308 - 12294364
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaag 216  Q
    |||| ||||||||||||||  ||||||||| |||||||||||  |||||||||||||    
T  12294308 atacgcttaaacaaattttcatataataatattatattgttggtgttattaaaaaag 12294364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 7456727 - 7456660
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||| ||| ||||||||| | ||||| |  |||||||||||||||||||||| || ||||||||||||    
T  7456727 attccaattatacccttagaaaaattattctataataatgttatattgttgatgtcattaaaaaagat 7456660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 49308251 - 49308314
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaa 214  Q
    |||||||| ||| ||||||||||||| |  |||||||| |||||||||||| ||||||| ||||    
T  49308251 attctaattataaccttaaacaaattatcctataataacgttatattgttggcgttattgaaaa 49308314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 28915579 - 28915621
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttga 202  Q
    |||| |||||||||||||| |||||||||||||||||| ||||    
T  28915579 atactcttaaacaaatttttttataataatgttatattattga 28915621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 28715492 - 28715451
Alignment:
Q  156 aatcatacccttaaacaaattttattataataatgttatatt 197  Q
    ||||||||||||||||||||||  |||||| |||||||||||    
T  28715492 aatcatacccttaaacaaatttgcttataaaaatgttatatt 28715451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 18955811 - 18955873
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaa 214  Q
    |||||||| |||||||||||||||| || ||||| |||||||||||||||| ||||||||||||    
T  18955811 attctaattatacccttaaacaaatattcttata-taatgttatattgttggcgttattaaaaa 18955873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 19578670 - 19578724
Alignment:
Q  161 tacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaa 215  Q
    ||||||||||||||||||   ||||||||||||||||||||  ||||||||||||    
T  19578670 tacccttaaacaaattttccaataataatgttatattgttggtgttattaaaaaa 19578724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 37681335 - 37681393
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||||||||||||||  |||| ||||||||||||||||  | |||||||||||||    
T  37681335 atacccttaaacaaattttcctatattaatgttatattgttggtggtattaaaaaagat 37681393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 38869878 - 38869932
Alignment:
Q  156 aatcatacccttaaacaaattttattataataatgttatattgttgacgttatta 210  Q
    ||||||||||||||| || ||||  ||||||||||||||||||||| ||||||||    
T  38869878 aatcatacccttaaataatttttcctataataatgttatattgttggcgttatta 38869932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 22354792 - 22354755
Alignment:
Q  164 ccttaaacaaattttattataataatgttatattgttg 201  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  22354792 ccttaaataaattttattataataatgttatattgttg 22354755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 14771325 - 14771277
Alignment:
Q  167 taaacaaattttattataataatgttatattgttgacgttattaaaaaa 215  Q
    |||||||||||| ||||||||||| |||||||||| ||||| |||||||    
T  14771325 taaacaaattttcttataataatgctatattgttggcgttactaaaaaa 14771277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 34804379 - 34804415
Alignment:
Q  179 attataataatgttatattgttgacgttattaaaaaa 215  Q
    |||||||||||||||||||||||| ||||||||||||    
T  34804379 attataataatgttatattgttgatgttattaaaaaa 34804415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 35368309 - 35368364
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    ||||| ||||||||||||| ||||||||   |||||||||||| |||||||||||||||    
T  35368309 atacctttaaacaaatttttttataata---ttatattgttgatgttattaaaaaagat 35368364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 20244422 - 20244363
Alignment:
Q  160 atacccttaaacaaat-tttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    ||||||||||| |||| ||| |||||||| |||||||||||||  |||||||||||||||    
T  20244422 atacccttaaataaatatttcttataatattgttatattgttggtgttattaaaaaagat 20244363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 2699579 - 2699525
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaa 214  Q
    ||||||||| | |||||||  |||||||||||||||||||||  |||||||||||    
T  2699579 atacccttatataaatttttatataataatgttatattgttggtgttattaaaaa 2699525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 6833897 - 6833931
Alignment:
Q  181 tataataatgttatattgttgacgttattaaaaaa 215  Q
    ||||||||||||||||||||| |||||||||||||    
T  6833897 tataataatgttatattgttggcgttattaaaaaa 6833931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 17035220 - 17035278
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||||||||||| ||  ||| ||||| |||||||||||  |||||||||||||||    
T  17035220 atacccttaaacaaatcttcatatgataatattatattgttggtgttattaaaaaagat 17035278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 17583197 - 17583255
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||||| || |||||  |||| ||||||||||||||||  |||||||||||||||    
T  17583197 atacccttaatcatattttcctatagtaatgttatattgttggtgttattaaaaaagat 17583255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 18721355 - 18721393
Alignment:
Q  164 ccttaaacaaattttattataataatgttatattgttga 202  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  18721355 ccttaaacaaattttataataataatgttttattgttga 18721393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 21960550 - 21960501
Alignment:
Q  164 ccttaaacaaattttattataataatgttatattgttgacgttattaaaaa 214  Q
    ||||||||||||||| ||||| ||||||||||||||||  |||||||||||    
T  21960550 ccttaaacaaattttcttata-taatgttatattgttggtgttattaaaaa 21960501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 39948865 - 39948915
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttg 201  Q
    |||||||| |||| |||||||| |||||  |||||||||||||||||||||    
T  39948865 attctaattatacacttaaacatatttttctataataatgttatattgttg 39948915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 53056338 - 53056379
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttg 201  Q
    ||||||||||||| |||||  |||||||||||||||||||||    
T  53056338 atacccttaaacatatttttctataataatgttatattgttg 53056379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 34666973 - 34667025
Alignment:
Q  166 ttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||||||||  |||||||||  ||||||||||  |||||||||||||||    
T  34666973 ttaaacaaatttttctataataatagtatattgttggtgttattaaaaaagat 34667025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 4968789 - 4968729
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaa 211  Q
    |||||||| ||||  ||||||||||||| ||||||||||||||||||||||  ||||||||    
T  4968789 attctaattatacttttaaacaaattttcttataataatgttatattgttggtgttattaa 4968729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 42561046 - 42560996
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttg 201  Q
    |||| ||| |||||||||||||||||||  |||||||||||||||||||||    
T  42561046 attccaattatacccttaaacaaatttttctataataatgttatattgttg 42560996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 8454500 - 8454457
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttat 194  Q
    |||| ||| ||||||||||||||||||| |||||||||||||||    
T  8454500 attccaattatacccttaaacaaattttcttataataatgttat 8454457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 11067182 - 11067115
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||| ||| ||| ||||||| ||| ||| | ||||||||||||||||||||  |||||||||||||||    
T  11067182 attccaattatatccttaaataaaatttttaataataatgttatattgttggtgttattaaaaaagat 11067115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 14487155 - 14487108
Alignment:
Q  167 taaacaaattttattataataatgttatattgttgacgttattaaaaa 214  Q
    ||||||||||||  |||||||||||||||||||||  |||||||||||    
T  14487155 taaacaaatttttatataataatgttatattgttggtgttattaaaaa 14487108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 33578830 - 33578791
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgt 199  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  33578830 atacccttaaacaaatttttctataataatgttatattgt 33578791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 40368047 - 40368114
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||| ||| |||||||||||||||||||  |||| ||||||||||||||||  || ||| ||||||||    
T  40368047 attccaattatacccttaaacaaatttttctatattaatgttatattgttggtgtcattgaaaaagat 40368114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 40780797 - 40780849
Alignment:
Q  166 ttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    ||||| |||||||  ||||||||| |||||||||||  |||||||||||||||    
T  40780797 ttaaataaatttttctataataatattatattgttggtgttattaaaaaagat 40780849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1017 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 2133 - 2066
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||| ||| ||||||||||||| |||||  ||||||||||||||||||||   |||||||||||||||    
T  2133 attccaattatacccttaaacatatttttctataataatgttatattgtttgtgttattaaaaaagat 2066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 97002 - 97057
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaa 215  Q
    ||||||||||||||||||| |||||||||| |||||||||||  || |||||||||    
T  97002 atacccttaaacaaatttttttataataatattatattgttggtgtgattaaaaaa 97057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 93788 - 93722
Alignment:
Q  152 ttctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    ||||||| ||||| |||||||||||| |||| || |||||||| || ||||||||||| | ||||||    
T  93788 ttctaattatacctttaaacaaatttgattacaaaaatgttattttattgacgttattcagaaagat 93722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 4119210 - 4119143
Alignment:
Q  152 ttctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagatt 219  Q
    ||||||| ||||||||||||||||||| ||||||||||| | |||||||   || |||||||||||||    
T  4119210 ttctaattatacccttaaacaaattttgttataataatgctttattgtttgtgtcattaaaaaagatt 4119143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 20469663 - 20469596
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||| ||| |||||||||||||||||||  |||| ||||||||||||||||  | |||||||||||||    
T  20469663 attccaattatacccttaaacaaattttcctatattaatgttatattgttggtggtattaaaaaagat 20469596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 34672681 - 34672618
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaa 214  Q
    |||| ||| ||||||||||| ||||||| ||||| ||||||||||||||||| | |||||||||    
T  34672681 attccaattatacccttaaataaatttttttatattaatgttatattgttgatgatattaaaaa 34672618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 5493070 - 5493024
Alignment:
Q  155 taatcatacccttaaacaaattttattataataatgttatattgttg 201  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||    
T  5493070 taattatacccttaaacaaatttttctataataatgttatattgttg 5493024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 11573366 - 11573423
Alignment:
Q  161 tacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    ||||||||||||||||||  ||||| ||||||||||| |||  |||||||||||||||    
T  11573366 tacccttaaacaaatttttctataaaaatgttatattcttggtgttattaaaaaagat 11573423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 2536629 - 2536577
Alignment:
Q  166 ttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||||||||  ||||||||| |||||||||||  |||||||||||||||    
T  2536629 ttaaacaaatttttctataataatattatattgttgttgttattaaaaaagat 2536577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 23659230 - 23659286
Alignment:
Q  162 acccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    ||||||||||| |||||  |||||||||||||||||||||  ||||||| |||||||    
T  23659230 acccttaaacatatttttctataataatgttatattgttggtgttattataaaagat 23659286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 12185322 - 12185372
Alignment:
Q  165 cttaaacaaattttattataataatgttatattgttgacgttattaaaaaa 215  Q
    |||||||||||||| ||||| ||||||||||||||||  | ||||||||||    
T  12185322 cttaaacaaattttcttatattaatgttatattgttggtggtattaaaaaa 12185372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 25342101 - 25342159
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||||||||||||||||||  |||| ||||||||||||||  | | |||||||||||||    
T  25342101 atacccttaaacaaatttttctatattaatgttatattgtcaatggtattaaaaaagat 25342159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 22968730 - 22968778
Alignment:
Q  167 taaacaaattttattataataatgttatattgttgacgttattaaaaaa 215  Q
    ||||||||||||  ||||||||||||||||| |||  ||||||||||||    
T  22968730 taaacaaatttttctataataatgttatattattgttgttattaaaaaa 22968778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 23819663 - 23819615
Alignment:
Q  167 taaacaaattttattataataatgttatattgttgacgttattaaaaaa 215  Q
    ||||||||||||  ||||||||||||||||| |||  ||||||||||||    
T  23819663 taaacaaatttttctataataatgttatattattgttgttattaaaaaa 23819615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 11658 - 11715
Alignment:
Q  160 atacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaagat 218  Q
    |||| |||||||||| ||| | ||||||||||||||||||||  |||||||||||||||    
T  11658 atactcttaaacaaactttct-ataataatgttatattgttggtgttattaaaaaagat 11715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 226484 - 226421
Alignment:
Q  151 attctaatcatacccttaaacaaattttattataataatgttatattgttgacgttattaaaaaa 215  Q
    |||||||| ||||  ||||||||||||| ||||| |||||||||||||||   ||||||||||||    
T  226484 attctaattatacgattaaacaaattttcttata-taatgttatattgttcgtgttattaaaaaa 226421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University