View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2836_low_16 (Length: 288)
Name: NF2836_low_16
Description: NF2836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2836_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 101 - 282
Target Start/End: Complemental strand, 22364465 - 22364282
Alignment:
| Q |
101 |
aatagattgatttcacaattcacatgcaaccactttcgaaacaccgcatataatcatttaattattatannnnnnnn--cttcatatttatccatctaca |
198 |
Q |
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| T |
22364465 |
aatagattgatttcacaattcacatgcaaccactttcgaaacaccgcatataatcatttaattattatattttttttttcttcatatttatccatctaca |
22364366 |
T |
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| Q |
199 |
cttgctattttcataacaccaatgagacataaacatctataaatttcatacgttaattttacacttcattttatcttcatatca |
282 |
Q |
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| T |
22364365 |
cttgctattttcataacaccaatgagacataaacatctataaatttcatacgttaattttacacttcattttatcttcttatca |
22364282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 22364729 - 22364644
Alignment:
| Q |
17 |
ctttatcattccatcgttcaacttttccacgacagccaccaaaccatctttacaacacaatatt--ttttcttcttcttttgcaat |
100 |
Q |
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| T |
22364729 |
ctttatcattccatcgttcaacttttccacgacagccaccaaaccatctttacatcacaatattttttttcttcctcttttgcaat |
22364644 |
T |
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