View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2836_low_18 (Length: 251)

Name: NF2836_low_18
Description: NF2836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2836_low_18
NF2836_low_18
[»] chr4 (7 HSPs)
chr4 (19-204)||(47293457-47293642)
chr4 (19-162)||(45876737-45876880)
chr4 (19-151)||(45858817-45858949)
chr4 (19-182)||(55705882-55706045)
chr4 (24-174)||(56208520-56208670)
chr4 (51-171)||(54304257-54304377)
chr4 (202-251)||(47293673-47293722)
[»] chr5 (3 HSPs)
chr5 (19-162)||(35854543-35854686)
chr5 (20-182)||(10521303-10521465)
chr5 (19-94)||(35802504-35802579)
[»] chr8 (2 HSPs)
chr8 (19-181)||(7972058-7972220)
chr8 (19-175)||(7961694-7961850)
[»] chr2 (1 HSPs)
chr2 (20-151)||(24357457-24357588)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 47293457 - 47293642
Alignment:
Q  19 agacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctatt 118  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47293457 agacaagatggaagaggttgcacagggaaggatttggaccagtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctatt 47293556  T
Q  119 gctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtggagcactcaatccctagtccgaatcttcctga 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47293557 gctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtggagcgctcaatccctagtccgaatcttcctga 47293642  T

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Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 45876880 - 45876737
Alignment:
Q  19 agacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctatt 118  Q
    |||||||||||||||||||||||| || ||| |||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||| || ||||||    
T  45876880 agacaagatggaagaggttgcacaagggagggtttggaccggtaaggatgcagcatcccatggtttggttgatgctattggtgggctatctcgtgctatt 45876781  T
Q  119 gctatagcaaaattgaaggccaatatacctcaaaacagacaggt 162  Q
    ||||||||||||||||| || |||||||||||| ||||||||||    
T  45876780 gctatagcaaaattgaaagctaatatacctcaagacagacaggt 45876737  T

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Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 45858949 - 45858817
Alignment:
Q  19 agacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctatt 118  Q
    ||||||||||||||||| ||||||||  ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| || ||||||    
T  45858949 agacaagatggaagaggctgcacaggagagggtttggaccggtaaggatgcagtatctcatggtctggttgatgctattggtgggctatcacgtgctatt 45858850  T
Q  119 gctatagcaaaattgaaggccaatatacctcaa 151  Q
    |||||||| ||||||||||||||||||||||||    
T  45858849 gctatagccaaattgaaggccaatatacctcaa 45858817  T

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Target: chr4; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 55705882 - 55706045
Alignment:
Q  19 agacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctatt 118  Q
    ||||||||||||||||||||| || || ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||  ||||||| ||||||    
T  55705882 agacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctatt 55705981  T
Q  119 gctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtggagcactcaa 182  Q
    |||||  |||||||||| || |||||||||||||||||| |||| | | ||||||||| |||||    
T  55705982 gctattacaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctcaa 55706045  T

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Target: chr4; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 56208670 - 56208520
Alignment:
Q  24 agatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctattgctat 123  Q
    |||||||||||||||||||||| ||| ||| ||||||||| || ||| |||||| |||||||||||||||||||||||| ||||| || |||||||||||    
T  56208670 agatggaagaggttgcacaggggagggtttagaccggtaaagatgcactatctcttggtttggttgatgctattggtgggctatctcgtgctattgctat 56208571  T
Q  124 agcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtgga 174  Q
    |||||||||||||||   |||||||||| ||| ||| || ||| |||||||    
T  56208570 agcaaaattgaaggctggtatacctcaagacaaacatgttactgttgtgga 56208520  T

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Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 171
Target Start/End: Original strand, 54304257 - 54304377
Alignment:
Q  51 tttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctattgctatagcaaaattgaaggccaatatacctca 150  Q
    ||||||| ||||||||||||  |||||  |||||||||||||||||||| ||  | || || ||||||||||||||||||||||||||||||||||||||    
T  54304257 tttggactggtaaggacgcaacatctctcggtttggttgatgctattggcgggatgtctcgtgctattgctatagcaaaattgaaggccaatatacctca 54304356  T
Q  151 aaacagacaggtcactcttgt 171  Q
    ||| ||  |||| ||||||||    
T  54304357 aaatagtgaggttactcttgt 54304377  T

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Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 47293673 - 47293722
Alignment:
Q  202 tgatgggagggtctgggcccattgtaatggagctccattggctattggct 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47293673 tgatgggagggtctgggcccattgtaatggagctccattggctattggct 47293722  T

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Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 35854543 - 35854686
Alignment:
Q  19 agacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctatt 118  Q
    |||||||||| || |||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| ||||||    
T  35854543 agacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctatt 35854642  T
Q  119 gctatagcaaaattgaaggccaatatacctcaaaacagacaggt 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  35854643 gctatagcaaaattgaaggccaatatacctcaaaacagacaggt 35854686  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 10521303 - 10521465
Alignment:
Q  20 gacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctattg 119  Q
    ||||||||| ||||| || ||||  | |||||||||| ||| |||||||||| |||||| |||||||||||||||||||||||  ||||||| |||||||    
T  10521303 gacaagatgaaagagattccacataggaggatttggatcgggaaggacgcagcatctcaaggtttggttgatgctattggtgggatatcgcgtgctattg 10521402  T
Q  120 ctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtggagcactcaa 182  Q
    |||| |||||||| |||||||||||||||||||||| |||||| | |||||| |||| |||||    
T  10521403 ctatcgcaaaattcaaggccaatatacctcaaaacaaacaggttaatcttgtcgagctctcaa 10521465  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 35802579 - 35802504
Alignment:
Q  19 agacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgct 94  Q
    |||||||||| || |||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35802579 agacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgct 35802504  T

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Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 7972220 - 7972058
Alignment:
Q  19 agacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctatt 118  Q
    ||||||||||||||||||||||||| | ||||||||||||||||| || ||||||||| |||||||||| ||||||||  ||||||||||||| ||||||    
T  7972220 agacaagatggaagaggttgcacagaggaggatttggaccggtaaagatgcagtatctaatggtttggtcgatgctatcagtggactatcgcgtgctatt 7972121  T
Q  119 gctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtggagcactca 181  Q
    |||||||||||||||||||||||| | |||||||||||||| || ||| ||||||||| ||||    
T  7972120 gctatagcaaaattgaaggccaatcttcctcaaaacagacatgttactattgtggagctctca 7972058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 7961850 - 7961694
Alignment:
Q  19 agacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctatt 118  Q
    |||||||||||||||||||||||| || || |||||||| ||||| || ||| ||||| ||| |||||| ||||||||||||||| |||||| |||||||    
T  7961850 agacaagatggaagaggttgcacaagggagaatttggactggtaaagatgcaatatctaatgatttggtcgatgctattggtggaatatcgcacgctatt 7961751  T
Q  119 gctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtggag 175  Q
    |||||||||||||||||||||||||| |||||||||| ||| || ||| ||||||||    
T  7961750 gctatagcaaaattgaaggccaatattcctcaaaacaaacatgttactattgtggag 7961694  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 24357457 - 24357588
Alignment:
Q  20 gacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctattg 119  Q
    |||||||||||  |||| |||||||| ||  ||||||| ||||| || |||| ||| |||||||||||||||||||||||||| || || || |||||||    
T  24357457 gacaagatggagaaggtagcacaggggagagtttggactggtaaagatgcagcatcacatggtttggttgatgctattggtggcctttcccgagctattg 24357556  T
Q  120 ctatagcaaaattgaaggccaatatacctcaa 151  Q
    | ||||||||||||||||||||||||||||||    
T  24357557 ccatagcaaaattgaaggccaatatacctcaa 24357588  T

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