View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2836_low_20 (Length: 249)
Name: NF2836_low_20
Description: NF2836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2836_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 15210737 - 15210518
Alignment:
| Q |
14 |
cacagatagcaactctttatcaggtctgagtctccaagcttttgaatttccctctgcaatgagagctacaatggcagatatgattaccacaaaacagcaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15210737 |
cacagatagcaactctttatcaggtctgagtctccaagcatttgaatttccctctgcaatgagagctacaatggtagatatgattaccacaaaacagcaa |
15210638 |
T |
|
| Q |
114 |
caaatggtgtttatcactagctcttctggataatccctgacaatccaagtctgtatatatatacatagatggnnnnnnnttgaatatatttccctattga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15210637 |
caaatggtgtttatcactagctcttctggataatccctgacaatccaagtctgtatatatatacatagatggaaaaaaattgaatatatttccctattga |
15210538 |
T |
|
| Q |
214 |
tatgataattacacgttgat |
233 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
15210537 |
tatgataattacacgttgat |
15210518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 15203962 - 15203802
Alignment:
| Q |
14 |
cacagatagcaactctttatcaggtctgagtctccaagcttttgaatttccctctgcaatgagagctacaatggcagatatgattaccacaaaacagcaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15203962 |
cacagatagcaactctttatcaggtctgagtctccaagcttttgaatttccctctgcaatgagagctacaatggtagatatgattaccacaaaacagcaa |
15203863 |
T |
|
| Q |
114 |
caaatggtgtttatcactagctcttctggataatccctgacaatccaagtctgtatatata |
174 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
15203862 |
caaatggttgttatcactagctcttctggataatccttgacaatccaagtctgcatatata |
15203802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 15182057 - 15181896
Alignment:
| Q |
14 |
cacagatagcaactctttatcaggtctgagtctccaagcttttgaatttccctctgcaatgagagctacaatggcagatatgattaccacaaaacagcaa |
113 |
Q |
| |
|
||||| || |||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| | | |||| |
|
|
| T |
15182057 |
cacagctaccaactccctatcaggtctgagaatccaaacttttgaatttccctctgcaatgagagctacaattgcagatagaattaccaccatgctgcaa |
15181958 |
T |
|
| Q |
114 |
caaatggtgtttatcactagctcttctggataatccctgacaatccaagtctgtatatatat |
175 |
Q |
| |
|
|||||| | ||| |||||||||||| ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
15181957 |
caaatgcttgttaccactagctcttcaggataatcccttataatccaagtctgtatatatat |
15181896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University