View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2836_low_21 (Length: 248)
Name: NF2836_low_21
Description: NF2836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2836_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 36313150 - 36313377
Alignment:
| Q |
1 |
ttgccattatactccaatacaagctctggctgtggaagcaaatggttttgcagcctcataaccaaaggtacccttgtacaaattccttgtccacgtggca |
100 |
Q |
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| T |
36313150 |
ttgccattatactccaatacaagctctggctgtggaagcaaatggttttgcagcctcataaccaaaggtacccttgtacaaattccttgtccacgtggca |
36313249 |
T |
|
| Q |
101 |
agctgataccagctaatgattcaaggacactagactttccagatgattgatctccaacaacaacaatggttggaagctggattccctctttggcaatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36313250 |
agctgataccagctaatgattcaaggacactagactttccagatgattgatctccaacaacaacaatggttggaagctggattccctctttggcaatgtt |
36313349 |
T |
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| Q |
201 |
gagacgccttagattttcaagagcatca |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
36313350 |
gagacgccttagattttcaagagcatca |
36313377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 36290748 - 36290893
Alignment:
| Q |
82 |
attccttgtccacgtggcaagctgataccagctaatgattcaaggacactagactttccagatgattgatctccaacaacaacaatggttggaagctgga |
181 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| | |
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| T |
36290748 |
attccttgtccacgtggcaagctgataccagctaaagattcaaggacactggactttcctgaagattgatctccaacaacaacaattgttggaagctgaa |
36290847 |
T |
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| Q |
182 |
ttccctctttggcaatgttgagacgccttagattttcaagagcatc |
227 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
36290848 |
ttccttctttggcaatgttgagacgccttagattctcaagggcatc |
36290893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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