View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2836_low_23 (Length: 241)
Name: NF2836_low_23
Description: NF2836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2836_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 39582423 - 39582647
Alignment:
| Q |
1 |
ccaatgcaccacctcgaagatgcataattctccgaaaaaacaataactgagatcttagattcttcaatggcttttaaaagtgcaggtgatatatcttccc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39582423 |
ccaaggcaccacctcgaagatgcataattctccgaaaaaacaataactgagatcttagattcttcaatggcttttaaaagtgcaggtgatatatcttccc |
39582522 |
T |
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| Q |
101 |
ctattctcagattcttatcatcaaagaatggattgattcccctcttccgcaatgcatcgcgaagataactgataaaattgtgccgcgtatcttctcctct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
39582523 |
ctattctcagattcttatcatcaaagaatggattgattcccctcttccgcaatgcatcgcgaagataaccgataaaattgtgccgcgtatcttcccctct |
39582622 |
T |
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| Q |
201 |
gaaactaaggaaaacatcataggta |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
39582623 |
gaaactaaggaaaacatcataggta |
39582647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 39619357 - 39619134
Alignment:
| Q |
1 |
ccaatgcaccacctcgaagatgcataattctccgaaaaaacaataactgagatcttagattcttcaatggcttttaaaagtgcaggtgatatatcttccc |
100 |
Q |
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|||| ||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || ||||||| |
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| T |
39619357 |
ccaaggcaccacctggaagatgcataattctcagaaaaaacaataactgcgatcttagattcttcaatggcttttgaaagtgcaggtgaaatgtcttccc |
39619258 |
T |
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| Q |
101 |
ctattctcagattcttatcatcaaagaatggattgattcccctcttccgcaatgcatcgcgaagataactgataaaattgtgccgcgtatcttctcctct |
200 |
Q |
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|||||||||||||||| ||||||||||| | ||||||||||| | | ||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
39619257 |
ctattctcagattcttgtcatcaaagaaagcattgattccccgatgctgcaatgcatcgcgaagataaccaataaaattgtgccgcacatcttctcctct |
39619158 |
T |
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| Q |
201 |
gaaactaaggaaaacatcataggt |
224 |
Q |
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||||| ||||||||||||||||| |
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| T |
39619157 |
aaaacttaggaaaacatcataggt |
39619134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 39577509 - 39577596
Alignment:
| Q |
138 |
tcccctcttccgcaatgcatcgcgaagataactgataaaattgtgccgcgtatcttctcctctgaaactaaggaaaacatcataggta |
225 |
Q |
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||||||||||||||||||||||||||||| |||||||| |||||| || | ||||| ||||| ||||| ||||| ||||||||||| |
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| T |
39577509 |
tcccctcttccgcaatgcatcgcgaagatgactgataacattgtgtggcatgtcttcccctctaaaactgaggaatgcatcataggta |
39577596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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