View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2836_low_27 (Length: 220)
Name: NF2836_low_27
Description: NF2836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2836_low_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 3056137 - 3056338
Alignment:
| Q |
1 |
tgtattcattgtagcaatatgtgtttgtacctccttcatttttcagtacaagaagaagcttagaagagttagcaaaagtgacacttctgttgaaaccaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056137 |
tgtattcattgtagcaatatgtgtttgtacctccttcatttttcagtacaagaagaagcttagaagagttagcaaaagtgacacttctgttgaaaccaat |
3056236 |
T |
|
| Q |
101 |
ttgcgttgcttcacttatgaagagcttgaagaagctaccaatggatttgacaaagagctaggaaggggagcttttggaatagtttacgaaggagtcatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056237 |
ttgcgttgcttcacttatgaagagcttgaagaagctaccaatggatttgacaaagagctaggaaggggagcttttggaatagtttacgaaggagtcatca |
3056336 |
T |
|
| Q |
201 |
ac |
202 |
Q |
| |
|
|| |
|
|
| T |
3056337 |
ac |
3056338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 37 - 202
Target Start/End: Complemental strand, 3070751 - 3070580
Alignment:
| Q |
37 |
catttttcagtacaagaagaagcttagaagagttagcaaaagtgacacttctgttgaaa------ccaatttgcgttgcttcacttatgaagagcttgaa |
130 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||| |||| ||||||| | |||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
3070751 |
catttttcagcacaagaaaaagcttagaagagttatcaaaggtgacacgtgtgttgaaattaaatccaatttgtgttgcttcacttatgaagagcttgaa |
3070652 |
T |
|
| Q |
131 |
gaagctaccaatggatttgacaaagagctaggaaggggagcttttggaatagtttacgaaggagtcatcaac |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
3070651 |
gaagctaccaatggatttgacaaagagctaggaaggggagcttttggtattgtttacgaaggagtcatcaac |
3070580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 3035291 - 3035470
Alignment:
| Q |
29 |
acctccttcatttttcagtacaagaagaagcttagaagagttagcaaaagtgacacttctgttgaaa------ccaatttgcgttgcttcacttatgaag |
122 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| || | |||||| || ||||||||||||||||||||| || |
|
|
| T |
3035291 |
acctccctcatttttaagtacaagaagaagcttagaagagttagcaaaagtgacgctagttttgaaattgaatcccatttgcgttgcttcacttatgcag |
3035390 |
T |
|
| Q |
123 |
agcttgaagaagctaccaatggatttgacaaagagctaggaaggggagcttttggaatagtttacgaaggagtcatcaac |
202 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||| ||||| |
|
|
| T |
3035391 |
agcttgaagaagctactaatggattcgacaaagagctaggaaggggagcttttggtattgtttatgaaggagtcgtcaac |
3035470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University