View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2836_low_5 (Length: 515)
Name: NF2836_low_5
Description: NF2836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2836_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 480; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 22 - 509
Target Start/End: Original strand, 5203574 - 5204061
Alignment:
| Q |
22 |
gcggtgaatgctatgtcttaccgaatggtgtaattgaattcaaatcgcttactgagttggtgttgatggggggaattagagttgatactgcgttcatgaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5203574 |
gcggtgaatgctatgtcttaccgaatggtgtaattgaagtcaaatcgcttactgagttggtgttgatggggggaattagagttgatactgcgttcatgaa |
5203673 |
T |
|
| Q |
122 |
tcattcaattaaatttttctcgttaagagtattgtcattgtgggctgtcctttcgagagatgaacatgcaattgagcatctcatttcttgttgtcctttg |
221 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5203674 |
tcattcaattaaatttttctcgttaaaagtattgtcattgtgggctgtcctttcgagagatgaacatgcaattgagcatctcatttcttgttgtcctttg |
5203773 |
T |
|
| Q |
222 |
attgaacatataactttgaagtgttgttctgtattgatccctaatgtcgcaacaaattttctacttgaatctgacacctctggggtcatgaagtctttga |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5203774 |
attgaacatataactttgaagtgttgttctgtattgatccctaatgtcgcaacaaattttctacttgaatctgacacctctggggtcatgaagtctttga |
5203873 |
T |
|
| Q |
322 |
atatgcatggtctacttaagttgaagacagttgatgttcaaggaatacaggaggtttatattgatgccccgtgtcttgagaaattttgttattgtcctgg |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5203874 |
atatgcatggtctacttaagttgaagacagttgatgttcaaggaatacaggaggtttatattgatgccccgtgtcttgagaaattttgttattgtcctgg |
5203973 |
T |
|
| Q |
422 |
tgattttgacgcaccgtttaagattgattttgataggtgccaaaatttgaaatatttagacttgttgtctttgaagagtagtattatc |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5203974 |
tgattttgacgcaccgtttaagattgattttgataggtgccaaaatttgaaatatttagacttgttgtctttgaagagtagtattatc |
5204061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 87 - 486
Target Start/End: Original strand, 6230077 - 6230476
Alignment:
| Q |
87 |
atggggggaattagagttgatactgcgttcatgaatcattcaattaaatttttctcgttaagagtattgtcattgtgggctgtcctttcgagagatgaac |
186 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||||| |||||||||||||||||| |||||| ||||||||||| | ||||||||| ||||| |||| |
|
|
| T |
6230077 |
atggggggaataagagttgatacagcattcatgaatcgttcaattaaatttttctcattaagaatattgtcattgaagcatgtcctttccagagacgaac |
6230176 |
T |
|
| Q |
187 |
atgcaattgagcatctcatttcttgttgtcctttgattgaacatataactttgaagtgttgttctgtattgatccctaatgtcgcaacaaattttctact |
286 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | |||||| | |||| |||||||| |||||||||| |||||| |
|
|
| T |
6230177 |
atgcaattgaacatctcatttcttgttgtcctttaattgaacatataactttgagggattgttcaatgttgagccctaatggcgcaacaaatcatctact |
6230276 |
T |
|
| Q |
287 |
tgaatctgacacctctggggtcatgaagtctttgaatatgcatggtctacttaagttgaagacagttgatgttcaaggaatacaggaggtttatattgat |
386 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6230277 |
tgaatctcacacctctggggtcatcaagtctttgagtatggatggtctacttaagttgaagacggttgatgttcaaggaatacaagaggtttatattgat |
6230376 |
T |
|
| Q |
387 |
gccccgtgtcttgagaaattttgttattgtcctggtgattttgacgcaccgtttaagattgattttgataggtgccaaaatttgaaatatttagacttgt |
486 |
Q |
| |
|
|||||| ||| |||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6230377 |
tccccgtctctcgagaaattacgttattgtcctggttattttgacgcaccatttaagattgattttgatagatgccaaaatttgaaatatttagacttgt |
6230476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 32 - 478
Target Start/End: Original strand, 5193346 - 5193780
Alignment:
| Q |
32 |
ctatgtcttaccgaatggtgtaattgaattcaaatcgcttactgagttggtgttgatggggggaattagagttgatactgcgttcatgaatcattcaatt |
131 |
Q |
| |
|
||||||| |||| || |||||||||||| ||||||||||||||||||| ||||||||| |||||| |||||||||| || |||||||||||||||||| |
|
|
| T |
5193346 |
ctatgtcctaccaaaaggtgtaattgaagtcaaatcgcttactgagttagtgttgatgccgggaatcggagttgatacagcattcatgaatcattcaatt |
5193445 |
T |
|
| Q |
132 |
aaatttttctcgttaagagtattgtcattgtgggctgtcctttcgagagatgaacatgcaattgagcatctcatttcttgttgtcctttgattgaacata |
231 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
5193446 |
aaatttttctcactaagagtattgtcattgtggggtgtccttgtgagagacgaacatgcaatcgaacatctcatttcttgttgtcctttgattgaacata |
5193545 |
T |
|
| Q |
232 |
taactttgaagtgttgttctgtattgatccctaatgtcgcaacaaattttctacttgaatctgacacctctggggtcatgaagtctttgaatatgcatgg |
331 |
Q |
| |
|
||||| ||| | |||||| || ||| |||||||| |||||||||| ||||||||| ||| |||||||||||||| |||| ||| |
|
|
| T |
5193546 |
taactgtgagcttttgttcagtgttgcgccctaatggcgcaacaaatcgtctacttga------------ggggagcatgaagtctttgagtatggttgg |
5193633 |
T |
|
| Q |
332 |
tctacttaagttgaagacagttgatgttcaaggaatacaggaggtttatattgatgccccgtgtcttgagaaattttgttattgtcctggtgattttgac |
431 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||| ||| |||| ||||| |||||||||||||||||||| | ||||||||||||| |||||||| |
|
|
| T |
5193634 |
tctacttaagttgaagacggttgatgttcgaggaatacaagagatttacattgacgccccgtgtcttgagaaattattttattgtcctggttattttgac |
5193733 |
T |
|
| Q |
432 |
gcaccgtttaagattgattttgataggtgccaaaatttgaaatattt |
478 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5193734 |
gaaccatttaagattgattttgataggtgccaaaatttgaaatattt |
5193780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 24 - 495
Target Start/End: Original strand, 5174427 - 5174898
Alignment:
| Q |
24 |
ggtgaatgctatgtcttaccgaatggtgtaattgaattcaaatcgcttactgagttggtgttgatggggggaattagagttgatactgcgttcatgaatc |
123 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||| ||||| || | |||||| | | ||||||||||| ||||||||| | ||||||||| |
|
|
| T |
5174427 |
ggtgaatgctatgtcttaccgaagggtataattgaaggaaaatcatttgttaagttggagctaatggggggaatcagagttgatcaatcattcatgaata |
5174526 |
T |
|
| Q |
124 |
attcaattaaatttttctcgttaagagtattgtcattgtgggctgtcctttcgagagatgaacatgcaattgagcatctcatttcttgttgtcctttgat |
223 |
Q |
| |
|
|||||||||| | |||||| || ||||||||||||||||||| ||||||| | |||| |||||||||||| |||| |||||| ||||||||||||| |
|
|
| T |
5174527 |
attcaattaagtgtttctcattgagagtattgtcattgtgggaggtcctttgtgaatatgagcatgcaattgagaatctgatttctcgttgtcctttgat |
5174626 |
T |
|
| Q |
224 |
tgaacatataactttgaagtgttgttctgtattgatccctaatgtcgcaacaaattttctacttgaatctgacacctctggggtcatgaagtctttgaat |
323 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| ||||| |||| | |||||| |||| |||||||||| ||| ||||| ||||||| ||||||| |
|
|
| T |
5174627 |
tgaacatataactttgaagtgttgttcagtgttgagccctagtgtcaccacaaatcatctatttgaatctgatacccctgggatcatgaaatctttgagc |
5174726 |
T |
|
| Q |
324 |
atgcatggtctacttaagttgaagacagttgatgttcaaggaatacaggaggtttatattgatgccccgtgtcttgagaaattttgttattgtcctggtg |
423 |
Q |
| |
|
|||| |||| || ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5174727 |
atgcgtggtttatcaaagctgaagacagttgatgttcaaggaatacaagaggtttatattgatgccccgtgtcttgagaatttttgttattgtcctggtg |
5174826 |
T |
|
| Q |
424 |
attttgacgcaccgtttaagattgattttgataggtgccaaaatttgaaatatttagacttgttgtctttga |
495 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| ||||||| ||| | ||| ||||||||||||||| |
|
|
| T |
5174827 |
attttgacgcaccatttaagattgattttgaaaggtgcaaaaatttaaaaaagttaaacttgttgtctttga |
5174898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 308 - 478
Target Start/End: Complemental strand, 1797510 - 1797340
Alignment:
| Q |
308 |
catgaagtctttgaatatgcatggtctacttaagttgaagacagttgatgttcaaggaatacaggaggtttatattgatgccccgtgtcttgagaaattt |
407 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | ||||||||||||||| ||||||| |||||||| |||||||||||||||| |||||||||| || |
|
|
| T |
1797510 |
catgaagtctttgagcatgcatggtctacttaagctcaagacagttgatgttgaaggaatccaggaggtatatattgatgccccgtatcttgagaaactt |
1797411 |
T |
|
| Q |
408 |
tgttattgtcctggtgattttgacgcaccgtttaagattgattttgataggtgccaaaatttgaaatattt |
478 |
Q |
| |
|
||||||||||| | ||||||| |||| | |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1797410 |
tgttattgtccggatgattttttttcaccatataagattgattttgatagatgccaaaatttgaaatattt |
1797340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 5170255 - 5170458
Alignment:
| Q |
24 |
ggtgaatgctatgtcttaccgaatggtgtaattgaattcaaatcgcttactgagttggtgttgatggggggaattagagttgatactgcgttcatgaatc |
123 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||| |||||| |||||| |||| |||||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
5170255 |
ggtgaatgctatgtattaccaaacggtgtaattgaagtcaaattgcttaccaagttagtgttggtggggggaattagagttgatcaagcattcatgaatc |
5170354 |
T |
|
| Q |
124 |
attcaattaaatttttctcgttaagagtattgtcattgtgggctgtcctttcgagagatgaacatgcaattgagcatctcatttcttgttgtcctttgat |
223 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||||| || ||| ||| || | |||||||||| ||||||||| |||||||||| |||| |||||||| |
|
|
| T |
5170355 |
attcaattaagtttttctcgttgagaaaattgtatttttggcgcatccctttgggagatgaacaagcaattgagtatctcatttcccgttgccctttgat |
5170454 |
T |
|
| Q |
224 |
tgaa |
227 |
Q |
| |
|
|||| |
|
|
| T |
5170455 |
tgaa |
5170458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 362 - 509
Target Start/End: Original strand, 5183348 - 5183498
Alignment:
| Q |
362 |
aggaatacaggaggtttatattgatgccccgtgtcttgagaaattttgttattgtcctgg---tgattttgacgcaccgtttaagattgattttgatagg |
458 |
Q |
| |
|
|||||| |||||||||||||||||||||| || ||||||||||||||||||| ||||||| | |||| |||||| |||||||||| ||||||||| |
|
|
| T |
5183348 |
aggaatccaggaggtttatattgatgcccagtatcttgagaaattttgttatagtcctggtcttcgttttaacgcacaatttaagattgtttttgataga |
5183447 |
T |
|
| Q |
459 |
tgccaaaatttgaaatatttagacttgttgtctttgaagagtagtattatc |
509 |
Q |
| |
|
||||||||||||||||||||| | ||||||| ||||| ||| ||||||||| |
|
|
| T |
5183448 |
tgccaaaatttgaaatatttaaaattgttgtatttgaggagaagtattatc |
5183498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 136 - 243
Target Start/End: Complemental strand, 1797625 - 1797518
Alignment:
| Q |
136 |
ttttctcgttaagagtattgtcattgtgggctgtcctttcgagagatgaacatgcaattgagcatctcatttcttgttgtcctttgattgaacatataac |
235 |
Q |
| |
|
||||||| ||||||||| |||||||||||| |||| |||||| ||| ||||||| |||||| ||| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
1797625 |
ttttctcattaagagtactgtcattgtgggatgtcgtttcgaaagacgaacatgtaattgaacattttatttcttgttgtccgttgattgaacatataac |
1797526 |
T |
|
| Q |
236 |
tttgaagt |
243 |
Q |
| |
|
|||||||| |
|
|
| T |
1797525 |
tttgaagt |
1797518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 387
Target Start/End: Original strand, 5170507 - 5170586
Alignment:
| Q |
308 |
catgaagtctttgaatatgcatggtctacttaagttgaagacagttgatgttcaaggaatacaggaggtttatattgatg |
387 |
Q |
| |
|
|||||| ||||||| || ||||| ||||| ||| | |||||||||||||||||||||||| | |||||| |||| |||| |
|
|
| T |
5170507 |
catgaaatctttgagcatacatggcctactaaagctaaagacagttgatgttcaaggaataaaagaggttcatatcgatg |
5170586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 26 - 240
Target Start/End: Original strand, 5176988 - 5177202
Alignment:
| Q |
26 |
tgaatgctatgtcttaccgaatggtgtaattgaattcaaatcgcttactgagttggtgttgatggggggaattagagttgatactgcgttcatgaatcat |
125 |
Q |
| |
|
||||||||||||| |||| || |||||||||||| ||||||| |||||||||| ||||||||||||||||| | ||||||||| | |||||||||||| |
|
|
| T |
5176988 |
tgaatgctatgtcctacccaagggtgtaattgaagtcaaatccattactgagttagtgttgatggggggaatcaaagttgatacatcattcatgaatcat |
5177087 |
T |
|
| Q |
126 |
tcaattaaatttttctcgttaagagtattgtcattgtgggctgtcctttcgagagatgaacatgcaattgagcatctcatttcttgttgtcctttgattg |
225 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||| | ||||||||| ||||| ||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5177088 |
tcaattaaatttttctcattaagagttttgtcattgaagcatgtcctttctagagacgaaaatgcaattgaacatctcatttcttgttgtcctttgattg |
5177187 |
T |
|
| Q |
226 |
aacatataactttga |
240 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5177188 |
aacatataactttga |
5177202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 28 - 242
Target Start/End: Complemental strand, 8553236 - 8553022
Alignment:
| Q |
28 |
aatgctatgtcttaccgaatggtgtaattgaattcaaatcgcttactgagttggtgttgatggggggaattagagttgatactgcgttcatgaatcattc |
127 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||| ||||| ||||| || ||||||||| ||| || |||||||||||| || ||||||||||| || |
|
|
| T |
8553236 |
aatgctatgttttaccgacaggtgtaatcgaagcaaaatcacttaccaaggtggtgttgaagggcgggattagagttgatcaagcattcatgaatcagtc |
8553137 |
T |
|
| Q |
128 |
aattaaatttttctcgttaagagtattgtcattgtgggctgtcctttcgagagatgaacatgcaattgagcatctcatttcttgttgtcctttgattgaa |
227 |
Q |
| |
|
|||||| ||||| || || |||||||||||||||||| ||| |||| | |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8553136 |
aattaagtttttttcattgagagtattgtcattgtggattgttcttttggaagatgaacatgcaattgagcatctcatttcttgttgtcctttcattgaa |
8553037 |
T |
|
| Q |
228 |
catataactttgaag |
242 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8553036 |
catataactttgaag |
8553022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 308 - 478
Target Start/End: Original strand, 5177216 - 5177386
Alignment:
| Q |
308 |
catgaagtctttgaatatgcatggtctacttaagttgaagacagttgatgttcaaggaatacaggaggtttatattgatgccccgtgtcttgagaaattt |
407 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| | ||||||||| | ||| ||||||| |||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
5177216 |
catgaagtctttgagcattcatggtctacttaagctcaagacagttaaagttgaaggaatccaggaggtatatattgatgccccgtatcttgagaaattg |
5177315 |
T |
|
| Q |
408 |
tgttattgtcctggtgattttgacgcaccgtttaagattgattttgataggtgccaaaatttgaaatattt |
478 |
Q |
| |
|
||| |||||| | ||||||| |||||| | |||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
5177316 |
cgtttttgtcccgatgattttttcgcaccatataagattggtttcgatagatgccaaaatttgaaatattt |
5177386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 307 - 494
Target Start/End: Complemental strand, 8552984 - 8552797
Alignment:
| Q |
307 |
tcatgaagtctttgaatatgcatggtctacttaagttgaagacagttgatgttcaaggaatacaggaggtttatattgatgccccgtgtcttgagaaatt |
406 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| | ||||||||||||||||| |||||||| ||||| ||||| |||| ||| |||||||| | | |
|
|
| T |
8552984 |
tcatgaagtctttgagcatgcatggtctaccaaagctcaagacagttgatgttcatggaatacaagaggtatatatagatgtcccaagtcttgagtatct |
8552885 |
T |
|
| Q |
407 |
ttgttattgtcctggtgattttgacgcaccgtttaagattgattttgataggtgccaaaatttgaaatatttagacttgttgtctttg |
494 |
Q |
| |
|
| |||||||| || || ||| ||||||| | ||||||| |||||||||| ||| |||||||||| ||||||||||| |||||| |
|
|
| T |
8552884 |
atattattgtcatgatgttttgaacgcaccatataagattcattttgatagttgcagaaatttgaaagggttagacttgttctctttg |
8552797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 473
Target Start/End: Original strand, 8305724 - 8305825
Alignment:
| Q |
372 |
gaggtttatattgatgccccgtgtcttgagaaattttgttattgtcctggtgattttgacgcaccgtttaagattgattttgataggtgccaaaatttga |
471 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| | | |||||||| || || ||| |||||||| | ||||||| |||||||||| ||| |||||||| |
|
|
| T |
8305724 |
gaggtttatattgatgtcccaaatcttgagaatctatattattgtcatgatgttttggacgcaccatataagattcattttgatagttgcagaaatttga |
8305823 |
T |
|
| Q |
472 |
aa |
473 |
Q |
| |
|
|| |
|
|
| T |
8305824 |
aa |
8305825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 49610498 - 49610712
Alignment:
| Q |
27 |
gaatgctatgtcttaccgaatggtgtaattgaattcaaatcgcttactgagttggtgttgatggggggaattagagttgatactgcgttcatgaatcatt |
126 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| ||||| ||||| ||||||| |||||||||||||| ||| ||||| || |||||| |||| | |
|
|
| T |
49610498 |
gaatgctatgtattaccgatgggtgtaattgaagcaaaatcacttaccaagttggtattgatggggggaatcagaattgatcaagcattcatgcatcagt |
49610597 |
T |
|
| Q |
127 |
caattaaatttttctcgttaagagtattgtcattgtgggctgtcctttcgagagatgaacatgcaattgagcatctcatttcttgttgtcctttgattga |
226 |
Q |
| |
|
||||||| ||||| ||||| | ||||||||||||||||| ||||||| | || |||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49610598 |
caattaagtttttttcgttgatagtattgtcattgtgggaagtccttttgggaaatgagcatgcaattgaacatctcatttcttgttgtcctttgattga |
49610697 |
T |
|
| Q |
227 |
acatataactttgaa |
241 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
49610698 |
acatataactttgaa |
49610712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 307 - 473
Target Start/End: Original strand, 49610751 - 49610917
Alignment:
| Q |
307 |
tcatgaagtctttgaatatgcatggtctacttaagttgaagacagttgatgttcaaggaatacaggaggtttatattgatgccccgtgtcttgagaaatt |
406 |
Q |
| |
|
||||||||| ||||| |||| |||||||| ||| | |||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||||| | |
|
|
| T |
49610751 |
tcatgaagtgtttgagcatgcttggtctaccaaagctcaagacagttgatgttcaaggaatacaagaggtttatgtcgatgccccatgtcttgagaatct |
49610850 |
T |
|
| Q |
407 |
ttgttattgtcctggtgattttgacgcaccgtttaagattgattttgataggtgccaaaatttgaaa |
473 |
Q |
| |
|
| ||||||| || || ||| |||||||| ||||||||| |||||||||| ||| |||||||||| |
|
|
| T |
49610851 |
atactattgtcatgatgttttggacgcaccatttaagattcattttgatagctgcagaaatttgaaa |
49610917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 114 - 240
Target Start/End: Original strand, 16472229 - 16472354
Alignment:
| Q |
114 |
ttcatgaatcattcaattaaatttttctcgttaagagtattgtcattgtgggctgtcctttcgagagatgaacatgcaattgagcatctcatttcttgtt |
213 |
Q |
| |
|
||||||||||| |||||| |||||||||| || |||||||||||||| || ||||||||||||||| |||||||||||||||| |||||||| || |
|
|
| T |
16472229 |
ttcatgaatcagtcaattcaatttttctcattgagagtattgtcattatgttgtgtcctttcgagagac-aacatgcaattgagcaattcatttctcatt |
16472327 |
T |
|
| Q |
214 |
gtcctttgattgaacatataactttga |
240 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
16472328 |
gtcctttgattgaacatataactttga |
16472354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 1180636 - 1180697
Alignment:
| Q |
178 |
gagatgaacatgcaattgagcatctcatttcttgttgtcctttgattgaacatataactttg |
239 |
Q |
| |
|
||||||||||||||||| | || ||||| |||| |||||||||||||||| ||||||||||| |
|
|
| T |
1180636 |
gagatgaacatgcaattaaccaactcatctctttttgtcctttgattgaatatataactttg |
1180697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 1185937 - 1186062
Alignment:
| Q |
114 |
ttcatgaatcattcaattaaatttttctcgttaagagtattgtcattgtgggctgtcctttcgagagatgaacatgcaattgagcatctcatttcttgtt |
213 |
Q |
| |
|
|||| |||||||||||| || |||||||| || || | ||||||| | || ||| |||| | ||||||||||||||| | || ||||| |||| || |
|
|
| T |
1185937 |
ttcacgaatcattcaataaagtttttctcattgagggaattgtcactaaggcatgtacttttggtagatgaacatgcaatcaaccacctcatctcttttt |
1186036 |
T |
|
| Q |
214 |
gtcctttgattgaacatataactttg |
239 |
Q |
| |
|
||| |||||||||| ||||||||||| |
|
|
| T |
1186037 |
gtcatttgattgaatatataactttg |
1186062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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